Wall clock time and date at job start Sat Apr 11 2020 05:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47153 * 2 1 4 4 C 1.46504 * 119.99434 * 269.99731 * 3 2 1 5 5 C 1.53005 * 109.47080 * 269.99903 * 4 3 2 6 6 C 1.34772 * 120.00288 * 89.99709 * 3 2 1 7 7 O 1.21286 * 120.00217 * 359.97438 * 6 3 2 8 8 C 1.50697 * 119.99825 * 179.72072 * 6 3 2 9 9 C 1.53007 * 109.47183 * 180.27423 * 8 6 3 10 10 C 1.50696 * 109.47249 * 180.02562 * 9 8 6 11 11 O 1.21277 * 119.99944 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99777 * 180.02562 * 10 9 8 13 13 C 1.46495 * 119.99576 * 179.97438 * 12 10 9 14 14 H 1.09006 * 109.50083 * 34.94103 * 13 12 10 15 15 C 1.53040 * 109.49353 * 155.00114 * 13 12 10 16 16 C 1.53040 * 109.53853 * 181.32047 * 15 13 12 17 17 C 1.53193 * 109.31334 * 298.63524 * 16 15 13 18 18 H 1.08998 * 109.58272 * 294.84727 * 17 16 15 19 19 C 1.52994 * 109.59024 * 174.42319 * 17 16 15 20 20 N 1.46923 * 108.77513 * 54.63355 * 17 16 15 21 21 C 1.36941 * 120.63024 * 126.41850 * 20 17 16 22 22 H 1.07994 * 119.99820 * 330.15724 * 21 20 17 23 23 C 1.38810 * 119.99794 * 150.16682 * 21 20 17 24 24 N 1.31617 * 120.00452 * 344.47387 * 23 21 20 25 25 Si 1.86802 * 119.99779 * 164.48067 * 23 21 20 26 26 H 1.48496 * 109.46925 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47156 * 119.99526 * 25 23 21 28 28 H 1.48500 * 109.47194 * 239.99587 * 25 23 21 29 29 C 1.46927 * 118.73862 * 306.39164 * 20 17 16 30 30 H 1.09000 * 109.46854 * 60.00178 * 1 2 3 31 31 H 1.08997 * 109.47599 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46920 * 300.00707 * 1 2 3 33 33 H 1.08997 * 109.47182 * 239.99655 * 2 1 3 34 34 H 1.08999 * 109.47029 * 119.99299 * 2 1 3 35 35 H 1.08997 * 109.47060 * 29.99903 * 4 3 2 36 36 H 1.08997 * 109.46849 * 150.00195 * 4 3 2 37 37 H 1.09003 * 109.46988 * 300.00331 * 5 4 3 38 38 H 1.09000 * 109.46925 * 59.99880 * 5 4 3 39 39 H 1.08998 * 109.46851 * 180.02562 * 5 4 3 40 40 H 1.09000 * 109.47509 * 300.27704 * 8 6 3 41 41 H 1.09005 * 109.46849 * 60.27947 * 8 6 3 42 42 H 1.09000 * 109.47127 * 300.00515 * 9 8 6 43 43 H 1.09008 * 109.46430 * 60.00118 * 9 8 6 44 44 H 0.96994 * 119.99778 * 359.97438 * 12 10 9 45 45 H 1.09000 * 109.45896 * 301.33650 * 15 13 12 46 46 H 1.08994 * 109.45943 * 61.31204 * 15 13 12 47 47 H 1.09001 * 109.49985 * 58.58552 * 16 15 13 48 48 H 1.09008 * 109.50014 * 178.68288 * 16 15 13 49 49 H 1.09000 * 109.47321 * 59.99704 * 19 17 16 50 50 H 1.09001 * 109.47228 * 179.97438 * 19 17 16 51 51 H 1.08997 * 109.47081 * 300.00100 * 19 17 16 52 52 H 0.96998 * 120.00702 * 180.02562 * 24 23 21 53 53 H 1.08994 * 109.59201 * 293.82357 * 29 20 17 54 54 H 1.08998 * 109.58665 * 173.39517 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.7076 1.8313 -1.7105 6 6 2.2429 2.0166 1.1671 7 8 2.0403 1.4452 2.2175 8 6 2.7513 3.4353 1.1670 9 6 2.9265 3.9144 2.6095 10 6 3.4342 5.3333 2.6094 11 8 3.6365 5.9048 1.5591 12 7 3.6644 5.9667 3.7767 13 6 4.1585 7.3458 3.7765 14 1 3.7251 7.8875 2.9357 15 6 3.7602 8.0311 5.0856 16 6 4.2473 9.4819 5.0727 17 6 5.7751 9.5024 4.9617 18 1 6.2124 9.0614 5.8574 19 6 6.2589 10.9457 4.8084 20 7 6.1740 8.7213 3.7829 21 6 6.9864 9.2684 2.8258 22 1 6.9614 10.3319 2.6398 23 6 7.8419 8.4558 2.0946 24 7 8.1042 7.2345 2.5092 25 14 8.6210 9.0957 0.5220 26 1 8.1678 10.4883 0.2762 27 1 10.0997 9.0725 0.6571 28 1 8.2146 8.2349 -0.6177 29 6 5.6853 7.3421 3.6509 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 1.5818 1.6875 -2.0284 36 1 2.0956 3.1409 -1.1386 37 1 4.3884 2.2154 -0.9508 38 1 3.8746 0.7620 -1.8406 39 1 3.8894 2.3454 -2.6542 40 1 3.7105 3.4776 0.6511 41 1 2.0348 4.0779 0.6552 42 1 1.9672 3.8721 3.1255 43 1 3.6429 3.2717 3.1213 44 1 3.5030 5.5094 4.6166 45 1 2.6753 8.0133 5.1893 46 1 4.2138 7.5034 5.9244 47 1 3.8135 10.0038 4.2197 48 1 3.9429 9.9762 5.9954 49 1 5.9511 11.5264 5.6779 50 1 7.3461 10.9581 4.7300 51 1 5.8244 11.3809 3.9085 52 1 8.7023 6.6668 1.9984 53 1 6.1153 6.7248 4.4396 54 1 5.9707 6.9449 2.6767 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132503364.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:59 Heat of formation + Delta-G solvation = -90.085359 kcal Electronic energy + Delta-G solvation = -30791.198301 eV Core-core repulsion = 26762.048310 eV Total energy + Delta-G solvation = -4029.149991 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.34094 -40.68533 -39.21736 -37.26875 -35.98563 -34.63896 -34.26142 -32.84066 -32.04629 -31.68360 -30.43981 -27.95900 -27.17754 -26.09293 -24.50063 -24.04785 -23.55345 -22.14614 -21.35915 -20.77328 -19.85571 -18.62191 -18.32251 -17.57817 -17.43271 -17.21027 -16.87544 -16.53929 -16.00362 -15.67850 -15.41954 -15.08554 -15.04394 -14.86673 -14.76272 -14.58144 -14.33849 -14.09622 -14.07630 -13.55967 -13.50134 -13.42424 -13.15656 -13.06099 -12.82315 -12.74243 -12.70548 -12.58354 -12.54778 -12.32398 -12.26670 -12.09024 -11.96165 -11.92835 -11.90193 -11.65240 -11.40085 -11.12489 -10.86434 -10.77384 -10.53891 -10.02149 -9.74889 -8.60527 -7.84124 -5.30782 1.41303 1.44915 1.53605 1.54697 1.70520 1.89984 2.34032 2.52267 3.31754 3.43615 3.70125 3.79346 3.94955 4.00246 4.05508 4.10212 4.11101 4.19768 4.22456 4.29169 4.40849 4.43837 4.49753 4.55304 4.58762 4.64521 4.71835 4.74059 4.81954 4.82921 4.89291 4.91284 4.92486 4.97016 5.01381 5.02636 5.08093 5.19751 5.27330 5.32028 5.33057 5.36057 5.52164 5.55274 5.60676 5.62494 5.71809 5.82159 6.30923 6.42680 6.66353 7.10018 7.17057 7.37276 7.90984 8.40880 9.21124 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013054 B = 0.002752 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.350863 B =10172.793301 C =11827.375891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.106 3.894 3 N -0.611 5.611 4 C 0.099 3.901 5 C -0.172 4.172 6 C 0.517 3.483 7 O -0.575 6.575 8 C -0.120 4.120 9 C -0.111 4.111 10 C 0.507 3.493 11 O -0.584 6.584 12 N -0.711 5.711 13 C 0.131 3.869 14 H 0.053 0.947 15 C -0.108 4.108 16 C -0.118 4.118 17 C 0.152 3.848 18 H 0.020 0.980 19 C -0.129 4.129 20 N -0.603 5.603 21 C -0.249 4.249 22 H 0.074 0.926 23 C -0.054 4.054 24 N -0.934 5.934 25 Si 0.957 3.043 26 H -0.263 1.263 27 H -0.290 1.290 28 H -0.298 1.298 29 C 0.181 3.819 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.038 0.962 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.117 0.883 43 H 0.101 0.899 44 H 0.413 0.587 45 H 0.085 0.915 46 H 0.070 0.930 47 H 0.053 0.947 48 H 0.094 0.906 49 H 0.078 0.922 50 H 0.037 0.963 51 H 0.046 0.954 52 H 0.244 0.756 53 H -0.005 1.005 54 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.776 -10.667 -2.406 20.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.016 4.016 3 N -0.343 5.343 4 C -0.023 4.023 5 C -0.230 4.230 6 C 0.306 3.694 7 O -0.456 6.456 8 C -0.160 4.160 9 C -0.152 4.152 10 C 0.294 3.706 11 O -0.464 6.464 12 N -0.363 5.363 13 C 0.025 3.975 14 H 0.071 0.929 15 C -0.146 4.146 16 C -0.157 4.157 17 C 0.047 3.953 18 H 0.037 0.963 19 C -0.186 4.186 20 N -0.328 5.328 21 C -0.379 4.379 22 H 0.092 0.908 23 C -0.249 4.249 24 N -0.580 5.580 25 Si 0.786 3.214 26 H -0.187 1.187 27 H -0.217 1.217 28 H -0.226 1.226 29 C 0.054 3.946 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.119 0.881 34 H 0.083 0.917 35 H 0.125 0.875 36 H 0.101 0.899 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.125 0.875 42 H 0.135 0.865 43 H 0.120 0.880 44 H 0.249 0.751 45 H 0.103 0.897 46 H 0.089 0.911 47 H 0.072 0.928 48 H 0.113 0.887 49 H 0.097 0.903 50 H 0.056 0.944 51 H 0.065 0.935 52 H 0.053 0.947 53 H 0.013 0.987 54 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -16.636 -10.641 -2.675 19.929 hybrid contribution 1.090 -0.190 -0.608 1.263 sum -15.546 -10.832 -3.283 19.230 Atomic orbital electron populations 1.22068 0.95035 1.03038 1.01701 1.21556 0.95043 0.81591 1.03438 1.48169 1.65100 1.14833 1.06244 1.21809 0.97524 0.98197 0.84723 1.22202 0.96176 1.02665 1.01964 1.20760 0.76563 0.88617 0.83460 1.90661 1.53927 1.68783 1.32186 1.21369 1.03919 0.92742 0.97970 1.21302 1.04601 0.90941 0.98329 1.21164 0.76724 0.89206 0.83492 1.90707 1.53757 1.69143 1.32772 1.45939 1.66403 1.14985 1.08944 1.21490 0.95381 0.81710 0.98923 0.92901 1.21649 1.01476 0.96283 0.95218 1.21948 0.95653 0.95798 1.02299 1.20808 0.93760 0.92221 0.88486 0.96254 1.21725 1.00376 0.95237 1.01288 1.44337 1.55337 1.11440 1.21651 1.19496 1.13248 0.93555 1.11628 0.90836 1.25820 0.98634 0.97399 1.03082 1.70175 1.38875 1.09760 1.39208 0.85351 0.77628 0.78203 0.80243 1.18717 1.21690 1.22557 1.20753 0.89571 0.85639 0.98669 0.91489 0.90053 0.94469 0.88103 0.91725 0.87513 0.89884 0.94265 0.91697 0.90071 0.88924 0.87476 0.86523 0.88036 0.75102 0.89657 0.91084 0.92842 0.88730 0.90314 0.94377 0.93496 0.94686 0.98709 0.93946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 10.24 71.98 0.74 -1.40 16 2 C 0.11 1.63 6.13 86.38 0.53 2.16 16 3 N -0.61 -11.38 2.47 -821.80 -2.03 -13.41 16 4 C 0.10 1.38 5.93 86.38 0.51 1.90 16 5 C -0.17 -2.59 10.24 71.98 0.74 -1.85 16 6 C 0.52 12.74 7.67 87.66 0.67 13.41 16 7 O -0.58 -17.53 15.56 -3.05 -0.05 -17.58 16 8 C -0.12 -2.99 3.54 29.85 0.11 -2.88 16 9 C -0.11 -2.91 4.99 29.85 0.15 -2.76 16 10 C 0.51 17.45 7.80 87.65 0.68 18.13 16 11 O -0.58 -25.70 15.64 -3.02 -0.05 -25.75 16 12 N -0.71 -22.90 5.08 -442.17 -2.25 -25.14 16 13 C 0.13 5.10 2.60 45.07 0.12 5.22 16 14 H 0.05 2.38 7.58 -2.38 -0.02 2.36 16 15 C -0.11 -3.22 5.35 30.62 0.16 -3.06 16 16 C -0.12 -3.68 5.37 30.67 0.16 -3.51 16 17 C 0.15 6.11 3.50 44.97 0.16 6.27 16 18 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 19 C -0.13 -4.67 7.95 71.98 0.57 -4.09 16 20 N -0.60 -30.73 2.99 -675.26 -2.02 -32.75 16 21 C -0.25 -13.97 8.58 84.03 0.72 -13.25 16 22 H 0.07 3.99 6.23 -2.91 -0.02 3.97 16 23 C -0.05 -3.18 4.94 84.86 0.42 -2.76 16 24 N -0.93 -58.04 11.23 21.65 0.24 -57.80 16 25 Si 0.96 47.38 29.58 68.60 2.03 49.41 16 26 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 27 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 28 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 29 C 0.18 9.10 4.86 86.36 0.42 9.52 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.10 1.03 8.07 -2.39 -0.02 1.01 16 34 H 0.06 1.25 7.42 -2.39 -0.02 1.24 16 35 H 0.11 0.92 8.07 -2.39 -0.02 0.91 16 36 H 0.08 1.22 6.45 -2.39 -0.02 1.20 16 37 H 0.04 0.78 7.20 -2.39 -0.02 0.76 16 38 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.09 2.52 7.11 -2.39 -0.02 2.50 16 41 H 0.11 2.49 7.36 -2.38 -0.02 2.47 16 42 H 0.12 2.57 8.10 -2.39 -0.02 2.55 16 43 H 0.10 2.63 8.10 -2.38 -0.02 2.61 16 44 H 0.41 10.07 8.60 -92.71 -0.80 9.28 16 45 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 49 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 50 H 0.04 1.52 7.67 -2.39 -0.02 1.51 16 51 H 0.05 1.74 7.40 -2.39 -0.02 1.72 16 52 H 0.24 14.84 8.31 -92.71 -0.77 14.07 16 53 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 54 H 0.04 2.56 6.15 -2.39 -0.01 2.54 16 Total: -1.00 -78.76 421.08 2.81 -75.95 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.07 Total: 26.05 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: 6.86 Total: 21.03 kcal Atomic # 7 Polarization: -123.05 SS G_CDS: -6.05 Total: -129.10 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -0.09 Total: -43.33 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -78.76 2.81 -75.95 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132503364.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.135 kcal (2) G-P(sol) polarization free energy of solvation -78.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds