Wall clock time and date at job start Sat Apr 11 2020 05:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.46813 * 2 1 4 4 C 1.46502 * 120.00218 * 270.27096 * 3 2 1 5 5 C 1.52997 * 109.47329 * 269.72810 * 4 3 2 6 6 C 1.34778 * 120.00045 * 90.00533 * 3 2 1 7 7 O 1.21287 * 119.99783 * 359.97438 * 6 3 2 8 8 C 1.50700 * 120.00154 * 179.97438 * 6 3 2 9 9 C 1.52997 * 109.47272 * 179.97438 * 8 6 3 10 10 C 1.50700 * 109.47272 * 180.02562 * 9 8 6 11 11 O 1.21277 * 119.99905 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99695 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.50002 * 325.06581 * 13 12 10 15 15 C 1.53037 * 109.49762 * 205.00245 * 13 12 10 16 16 C 1.53046 * 109.53733 * 178.68730 * 15 13 12 17 17 C 1.53197 * 109.31292 * 61.36412 * 16 15 13 18 18 H 1.08998 * 109.58471 * 65.29490 * 17 16 15 19 19 C 1.53001 * 109.58532 * 185.57746 * 17 16 15 20 20 N 1.46926 * 108.77187 * 305.36608 * 17 16 15 21 21 C 1.36939 * 120.62375 * 233.62810 * 20 17 16 22 22 H 1.07999 * 120.00253 * 29.01976 * 21 20 17 23 23 C 1.38812 * 119.99530 * 209.01278 * 21 20 17 24 24 N 1.31616 * 120.00421 * 15.01783 * 23 21 20 25 25 Si 1.86803 * 119.99944 * 195.01755 * 23 21 20 26 26 H 1.48499 * 109.46955 * 89.99942 * 25 23 21 27 27 H 1.48502 * 109.47426 * 210.00174 * 25 23 21 28 28 H 1.48502 * 109.46931 * 330.00150 * 25 23 21 29 29 C 1.46921 * 118.74094 * 53.61271 * 20 17 16 30 30 H 1.09003 * 109.47027 * 60.00088 * 1 2 3 31 31 H 1.09004 * 109.46893 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47395 * 299.99597 * 1 2 3 33 33 H 1.09004 * 109.47090 * 240.00337 * 2 1 3 34 34 H 1.08996 * 109.47366 * 119.99766 * 2 1 3 35 35 H 1.08998 * 109.46556 * 29.72868 * 4 3 2 36 36 H 1.09003 * 109.47087 * 149.72640 * 4 3 2 37 37 H 1.09004 * 109.47086 * 179.97438 * 5 4 3 38 38 H 1.08998 * 109.47349 * 299.99572 * 5 4 3 39 39 H 1.09003 * 109.47175 * 59.99883 * 5 4 3 40 40 H 1.08994 * 109.47366 * 299.99818 * 8 6 3 41 41 H 1.09005 * 109.47034 * 59.99942 * 8 6 3 42 42 H 1.09001 * 109.47288 * 300.00226 * 9 8 6 43 43 H 1.09010 * 109.46613 * 59.99915 * 9 8 6 44 44 H 0.96998 * 120.00009 * 0.02562 * 12 10 9 45 45 H 1.08997 * 109.46069 * 298.70435 * 15 13 12 46 46 H 1.08996 * 109.46263 * 58.66725 * 15 13 12 47 47 H 1.08997 * 109.49574 * 181.31729 * 16 15 13 48 48 H 1.08994 * 109.49495 * 301.41050 * 16 15 13 49 49 H 1.08998 * 109.46678 * 60.00029 * 19 17 16 50 50 H 1.08998 * 109.46729 * 179.97438 * 19 17 16 51 51 H 1.08997 * 109.47007 * 300.00188 * 19 17 16 52 52 H 0.96999 * 120.00402 * 179.97438 * 24 23 21 53 53 H 1.09006 * 109.58495 * 186.60262 * 29 20 17 54 54 H 1.08997 * 109.59084 * 66.17523 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2568 2.0739 -1.2687 5 6 3.7017 1.8399 -1.7138 6 6 2.2430 2.0166 1.1672 7 8 2.0405 1.4449 2.2176 8 6 2.7458 3.4372 1.1672 9 6 2.9151 3.9183 2.6097 10 6 3.4173 5.3391 2.6097 11 8 3.6194 5.9109 1.5594 12 7 3.6419 5.9744 3.7770 13 6 4.1307 7.3555 3.7770 14 1 4.8069 7.5022 2.9348 15 6 4.8756 7.6337 5.0846 16 6 5.4148 9.0660 5.0717 17 6 4.2434 10.0474 4.9643 18 1 3.6293 9.9829 5.8625 19 6 4.7801 11.4719 4.8111 20 7 3.4378 9.6952 3.7871 21 6 3.1524 10.6332 2.8312 22 1 3.8376 11.4488 2.6533 23 6 1.9824 10.5356 2.0906 24 7 1.0156 9.7366 2.4897 25 14 1.7800 11.5382 0.5275 26 1 2.2845 10.7570 -0.6304 27 1 0.3431 11.8531 0.3239 28 1 2.5517 12.8014 0.6463 29 6 2.9447 8.3175 3.6550 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.5758 1.6876 -2.0271 36 1 2.0856 3.1424 -1.1371 37 1 3.8790 2.3549 -2.6580 38 1 4.3826 2.2263 -0.9554 39 1 3.8729 0.7715 -1.8454 40 1 3.7060 3.4828 0.6536 41 1 2.0280 4.0767 0.6533 42 1 1.9547 3.8728 3.1231 43 1 3.6327 3.2788 3.1240 44 1 3.4807 5.5170 4.6170 45 1 4.1926 7.5104 5.9250 46 1 5.7054 6.9343 5.1857 47 1 5.9652 9.2558 5.9931 48 1 6.0787 9.1971 4.2173 49 1 5.3898 11.5354 3.9098 50 1 3.9452 12.1684 4.7344 51 1 5.3878 11.7266 5.6794 52 1 0.1979 9.6687 1.9724 53 1 2.4702 8.1910 2.6818 54 1 2.2233 8.1102 4.4453 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132503368.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:12 Heat of formation + Delta-G solvation = -89.647368 kcal Electronic energy + Delta-G solvation = -30781.738259 eV Core-core repulsion = 26752.607261 eV Total energy + Delta-G solvation = -4029.130998 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.34013 -40.68396 -39.21751 -37.26742 -35.98475 -34.64360 -34.26246 -32.84082 -32.04704 -31.67190 -30.43502 -27.95962 -27.18024 -26.09422 -24.49292 -24.04146 -23.55530 -22.14607 -21.35674 -20.77175 -19.85471 -18.62326 -18.32342 -17.57028 -17.40725 -17.26580 -16.82826 -16.58282 -15.95479 -15.71839 -15.39999 -15.10717 -14.98718 -14.86938 -14.80050 -14.58604 -14.27648 -14.19155 -14.00874 -13.58307 -13.49239 -13.42103 -13.13993 -13.05784 -12.83073 -12.72596 -12.70634 -12.57353 -12.56233 -12.32384 -12.26233 -12.08481 -11.96158 -11.92794 -11.89962 -11.64779 -11.39915 -11.13179 -10.86606 -10.77183 -10.52950 -10.02100 -9.74705 -8.61265 -7.83360 -5.29952 1.42012 1.46296 1.52358 1.54702 1.70806 1.89954 2.34162 2.52632 3.32196 3.43703 3.70363 3.79554 3.95175 4.00766 4.04021 4.10349 4.12063 4.20038 4.22050 4.29142 4.40772 4.43775 4.49602 4.56458 4.58600 4.64667 4.71874 4.74179 4.81850 4.82975 4.89308 4.91172 4.93254 4.98198 5.01208 5.02217 5.08010 5.19716 5.26482 5.31996 5.34160 5.36484 5.52782 5.55316 5.60705 5.62932 5.71444 5.83356 6.30867 6.42697 6.66576 7.09989 7.17324 7.37539 7.91446 8.40747 9.21600 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012711 B = 0.002712 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.299647 B =10321.629551 C =11607.777346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.107 3.893 3 N -0.611 5.611 4 C 0.096 3.904 5 C -0.168 4.168 6 C 0.517 3.483 7 O -0.575 6.575 8 C -0.120 4.120 9 C -0.111 4.111 10 C 0.506 3.494 11 O -0.584 6.584 12 N -0.711 5.711 13 C 0.131 3.869 14 H 0.052 0.948 15 C -0.108 4.108 16 C -0.118 4.118 17 C 0.152 3.848 18 H 0.020 0.980 19 C -0.129 4.129 20 N -0.604 5.604 21 C -0.250 4.250 22 H 0.075 0.925 23 C -0.054 4.054 24 N -0.934 5.934 25 Si 0.958 3.042 26 H -0.294 1.294 27 H -0.295 1.295 28 H -0.263 1.263 29 C 0.180 3.820 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.033 0.967 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.046 0.954 39 H 0.065 0.935 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.116 0.884 44 H 0.413 0.587 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.094 0.906 48 H 0.053 0.947 49 H 0.046 0.954 50 H 0.037 0.963 51 H 0.078 0.922 52 H 0.244 0.756 53 H 0.045 0.955 54 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.095 -18.729 -2.337 19.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.014 4.014 3 N -0.343 5.343 4 C -0.026 4.026 5 C -0.226 4.226 6 C 0.306 3.694 7 O -0.455 6.455 8 C -0.160 4.160 9 C -0.152 4.152 10 C 0.294 3.706 11 O -0.464 6.464 12 N -0.363 5.363 13 C 0.025 3.975 14 H 0.070 0.930 15 C -0.146 4.146 16 C -0.157 4.157 17 C 0.047 3.953 18 H 0.038 0.962 19 C -0.187 4.187 20 N -0.328 5.328 21 C -0.380 4.380 22 H 0.092 0.908 23 C -0.249 4.249 24 N -0.581 5.581 25 Si 0.787 3.213 26 H -0.221 1.221 27 H -0.221 1.221 28 H -0.187 1.187 29 C 0.053 3.947 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.052 0.948 33 H 0.122 0.878 34 H 0.086 0.914 35 H 0.121 0.879 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.124 0.876 41 H 0.112 0.888 42 H 0.120 0.880 43 H 0.134 0.866 44 H 0.249 0.751 45 H 0.089 0.911 46 H 0.103 0.897 47 H 0.113 0.887 48 H 0.071 0.929 49 H 0.065 0.935 50 H 0.056 0.944 51 H 0.097 0.903 52 H 0.053 0.947 53 H 0.064 0.936 54 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges 5.994 -18.615 -2.603 19.729 hybrid contribution -0.893 0.520 -0.619 1.205 sum 5.101 -18.095 -3.222 19.074 Atomic orbital electron populations 1.22093 0.95547 1.03022 1.01481 1.21550 0.94655 0.81595 1.03648 1.48169 1.65152 1.14799 1.06229 1.21821 0.98156 0.97924 0.84681 1.22171 0.95587 1.02789 1.02050 1.20759 0.76624 0.88555 0.83459 1.90661 1.53884 1.68817 1.32183 1.21364 1.04227 0.92419 0.97965 1.21301 1.04452 0.91090 0.98321 1.21165 0.76686 0.89249 0.83492 1.90708 1.53423 1.69473 1.32787 1.45938 1.67217 1.14171 1.08936 1.21494 0.96440 0.80712 0.98883 0.92976 1.21650 0.99875 0.97859 0.95252 1.21948 0.97567 0.93896 1.02292 1.20805 0.91404 0.94545 0.88517 0.96211 1.21733 1.00012 0.95618 1.01299 1.44335 1.60864 1.05814 1.21767 1.19498 1.00581 1.06381 1.11563 0.90751 1.25804 0.95179 1.00881 1.03082 1.70165 1.05654 1.42971 1.39297 0.85399 0.76501 0.78987 0.80458 1.22109 1.22143 1.18722 1.20779 0.91973 0.83122 0.98861 0.91788 0.89908 0.94790 0.87825 0.91390 0.87945 0.90411 0.90086 0.93529 0.91551 0.87646 0.88810 0.87996 0.86554 0.75105 0.91070 0.89690 0.88725 0.92865 0.93500 0.94371 0.90297 0.94680 0.93644 0.98752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 10.24 71.98 0.74 -1.69 16 2 C 0.11 1.65 6.12 86.38 0.53 2.18 16 3 N -0.61 -11.43 2.47 -821.81 -2.03 -13.46 16 4 C 0.10 1.36 5.93 86.38 0.51 1.87 16 5 C -0.17 -2.12 10.24 71.98 0.74 -1.39 16 6 C 0.52 12.77 7.67 87.66 0.67 13.45 16 7 O -0.58 -17.55 15.56 -3.05 -0.05 -17.59 16 8 C -0.12 -2.99 3.55 29.85 0.11 -2.89 16 9 C -0.11 -2.91 4.99 29.85 0.15 -2.77 16 10 C 0.51 17.51 7.80 87.66 0.68 18.20 16 11 O -0.58 -25.82 15.64 -3.02 -0.05 -25.87 16 12 N -0.71 -22.98 5.08 -442.17 -2.25 -25.23 16 13 C 0.13 5.11 2.60 45.07 0.12 5.23 16 14 H 0.05 2.35 7.58 -2.39 -0.02 2.34 16 15 C -0.11 -3.24 5.35 30.62 0.16 -3.07 16 16 C -0.12 -3.68 5.37 30.68 0.16 -3.52 16 17 C 0.15 6.11 3.50 44.98 0.16 6.27 16 18 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 19 C -0.13 -4.67 7.95 71.98 0.57 -4.10 16 20 N -0.60 -30.76 2.99 -675.22 -2.02 -32.78 16 21 C -0.25 -14.03 8.61 84.03 0.72 -13.31 16 22 H 0.07 4.02 6.20 -2.91 -0.02 4.01 16 23 C -0.05 -3.19 4.96 84.86 0.42 -2.77 16 24 N -0.93 -58.06 11.14 21.65 0.24 -57.82 16 25 Si 0.96 47.36 29.58 68.60 2.03 49.39 16 26 H -0.29 -14.70 7.11 99.48 0.71 -14.00 16 27 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 28 H -0.26 -12.13 7.11 99.48 0.71 -11.43 16 29 C 0.18 9.06 4.86 86.36 0.42 9.48 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.10 1.00 8.07 -2.39 -0.02 0.98 16 34 H 0.07 1.27 7.42 -2.39 -0.02 1.26 16 35 H 0.10 0.99 8.07 -2.39 -0.02 0.97 16 36 H 0.08 1.26 6.44 -2.39 -0.02 1.24 16 37 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.05 0.73 7.20 -2.39 -0.02 0.71 16 39 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.11 2.51 7.13 -2.39 -0.02 2.50 16 41 H 0.09 2.52 7.35 -2.38 -0.02 2.50 16 42 H 0.10 2.64 8.10 -2.39 -0.02 2.62 16 43 H 0.12 2.58 8.10 -2.38 -0.02 2.56 16 44 H 0.41 10.11 8.60 -92.71 -0.80 9.31 16 45 H 0.07 1.99 8.14 -2.39 -0.02 1.98 16 46 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.05 1.74 7.40 -2.39 -0.02 1.72 16 50 H 0.04 1.52 7.66 -2.39 -0.02 1.51 16 51 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 52 H 0.24 14.87 8.31 -92.71 -0.77 14.10 16 53 H 0.05 2.75 6.06 -2.38 -0.01 2.73 16 54 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 Total: -1.00 -78.64 420.93 2.81 -75.82 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: 0.07 Total: 26.36 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: 6.87 Total: 21.17 kcal Atomic # 7 Polarization: -123.23 SS G_CDS: -6.06 Total: -129.28 kcal Atomic # 8 Polarization: -43.37 SS G_CDS: -0.09 Total: -43.46 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -78.64 2.81 -75.82 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132503368.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.823 kcal (2) G-P(sol) polarization free energy of solvation -78.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds