Wall clock time and date at job start Sat Apr 11 2020 05:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.47509 * 2 1 4 4 C 1.46500 * 119.99841 * 270.00074 * 3 2 1 5 5 C 1.50694 * 109.46936 * 269.99630 * 4 3 2 6 6 H 1.08001 * 120.00099 * 359.97438 * 5 4 3 7 7 C 1.37886 * 119.99942 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99704 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99844 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47033 * 60.00225 * 9 7 5 11 11 H 1.48505 * 109.46734 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46948 * 299.99769 * 9 7 5 13 13 C 1.34775 * 120.00442 * 89.99311 * 3 2 1 14 14 O 1.21277 * 120.00507 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99706 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47101 * 179.97438 * 15 13 3 17 17 C 1.46907 * 111.00072 * 179.97438 * 16 15 13 18 18 C 1.52994 * 109.47121 * 179.97438 * 17 16 15 19 19 N 1.46501 * 109.47038 * 179.97438 * 18 17 16 20 20 C 1.34776 * 120.00209 * 180.02562 * 19 18 17 21 21 O 1.21285 * 119.99935 * 359.72442 * 20 19 18 22 22 C 1.50696 * 120.00332 * 180.02562 * 20 19 18 23 23 H 1.08996 * 115.54881 * 11.28370 * 22 20 19 24 24 C 1.53001 * 117.49910 * 156.94644 * 22 20 19 25 25 C 1.52996 * 117.50131 * 225.57093 * 22 20 19 26 26 H 1.09001 * 117.50228 * 145.02293 * 25 22 20 27 27 C 1.53002 * 117.49660 * 359.97438 * 25 22 20 28 28 C 1.52995 * 109.47228 * 60.51456 * 27 25 22 29 29 C 1.53003 * 109.46940 * 180.51380 * 27 25 22 30 30 H 1.09004 * 109.46914 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47061 * 300.00246 * 1 2 3 32 32 H 1.09000 * 109.46860 * 59.99942 * 1 2 3 33 33 H 1.09003 * 109.47391 * 239.99340 * 2 1 3 34 34 H 1.09000 * 109.46860 * 120.00058 * 2 1 3 35 35 H 1.09000 * 109.47277 * 29.99813 * 4 3 2 36 36 H 1.09005 * 109.47213 * 149.99355 * 4 3 2 37 37 H 0.97003 * 119.99318 * 180.02562 * 8 7 5 38 38 H 1.09002 * 109.47657 * 59.99538 * 15 13 3 39 39 H 1.09000 * 109.47063 * 299.99502 * 15 13 3 40 40 H 1.00898 * 110.99955 * 303.94773 * 16 15 13 41 41 H 1.09001 * 109.47106 * 59.99523 * 17 16 15 42 42 H 1.08998 * 109.47011 * 300.00205 * 17 16 15 43 43 H 1.09001 * 109.46823 * 60.00135 * 18 17 16 44 44 H 1.08998 * 109.47563 * 300.00133 * 18 17 16 45 45 H 0.96996 * 120.00047 * 0.02562 * 19 18 17 46 46 H 1.09003 * 117.50222 * 214.98092 * 24 22 20 47 47 H 1.09007 * 117.49860 * 0.02562 * 24 22 20 48 48 H 1.09003 * 109.47098 * 300.50881 * 27 25 22 49 49 H 1.09006 * 109.47174 * 49.95708 * 28 27 25 50 50 H 1.08996 * 109.47044 * 169.95441 * 28 27 25 51 51 H 1.08995 * 109.46846 * 289.95830 * 28 27 25 52 52 H 1.09005 * 109.46984 * 59.99704 * 29 27 25 53 53 H 1.08995 * 109.47055 * 179.97438 * 29 27 25 54 54 H 1.08999 * 109.46970 * 300.00417 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0957 7 6 4.1496 2.3903 -2.8775 8 7 3.3495 3.1264 -3.6176 9 14 5.9140 2.0973 -3.4163 10 1 6.1419 0.6407 -3.5941 11 1 6.1615 2.7972 -4.7024 12 1 6.8411 2.6206 -2.3809 13 6 2.2430 2.0166 1.1671 14 8 2.6469 3.1601 1.1671 15 6 1.9922 1.3061 2.4723 16 7 2.3108 2.2060 3.5888 17 6 2.0772 1.5458 4.8802 18 6 2.4199 2.5118 6.0161 19 7 2.1863 1.8536 7.3040 20 6 2.4214 2.5180 8.4528 21 8 2.8312 3.6591 8.4204 22 6 2.1817 1.8409 9.7775 23 1 2.0054 0.7663 9.7311 24 6 2.9366 2.3810 10.9938 25 6 1.4344 2.6341 10.8514 26 1 0.7660 2.0813 11.5117 27 6 0.9881 4.0543 10.4982 28 6 0.0309 4.0065 9.3057 29 6 0.2753 4.6784 11.6996 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.5818 1.6876 -2.0284 36 1 2.0956 3.1410 -1.1385 37 1 3.6757 3.5168 -4.4435 38 1 2.6226 0.4187 2.5300 39 1 0.9443 1.0117 2.5301 40 1 3.2592 2.5439 3.5215 41 1 2.7076 0.6597 4.9546 42 1 1.0297 1.2538 4.9547 43 1 1.7897 3.3981 5.9418 44 1 3.4674 2.8035 5.9415 45 1 1.8624 0.9397 7.3299 46 1 3.2565 1.6617 11.7478 47 1 3.6063 3.2264 10.8359 48 1 1.8600 4.6556 10.2405 49 1 -0.7480 3.2676 9.4943 50 1 -0.4245 4.9868 9.1658 51 1 0.5833 3.7309 8.4074 52 1 0.9573 4.7125 12.5493 53 1 -0.0422 5.6904 11.4483 54 1 -0.5965 4.0771 11.9574 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136062294.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:35 Heat of formation + Delta-G solvation = -82.876282 kcal Electronic energy + Delta-G solvation = -29213.018128 eV Core-core repulsion = 25184.180746 eV Total energy + Delta-G solvation = -4028.837382 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.35069 -40.72026 -38.46652 -37.38189 -36.81928 -35.32080 -34.84616 -34.29073 -31.66283 -30.88433 -29.17846 -28.06630 -27.00512 -25.12804 -24.49737 -23.85877 -23.64285 -22.99154 -21.48312 -20.60920 -19.93562 -18.62197 -18.10564 -17.73996 -17.53193 -17.21137 -16.94422 -16.63245 -16.31338 -15.97068 -15.48621 -15.44251 -14.90754 -14.87080 -14.63211 -14.57808 -14.47053 -14.16557 -14.08766 -13.65980 -13.50689 -13.43672 -13.21754 -13.07154 -13.06889 -13.04149 -12.66457 -12.63533 -12.48302 -12.40937 -12.15473 -12.13460 -12.07910 -11.85110 -11.73150 -11.73018 -11.15337 -10.93480 -10.76921 -10.64553 -10.56981 -10.10000 -9.45626 -9.39835 -8.22255 -6.37434 1.35441 1.40068 1.47215 1.48882 1.87494 1.98365 2.31823 2.45731 2.96062 3.06912 3.30429 3.62580 3.72080 3.81241 3.87116 3.90913 4.06093 4.09409 4.13532 4.22873 4.34654 4.39002 4.39862 4.45868 4.46847 4.51756 4.67794 4.68840 4.78579 4.84158 4.89392 4.92231 4.93267 4.97097 5.01500 5.02088 5.05838 5.07034 5.20861 5.22892 5.30425 5.34519 5.41819 5.45109 5.57838 5.58270 5.82282 5.92615 6.06970 6.21547 6.58355 6.70837 6.84582 7.28846 7.30433 7.53474 8.84424 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019048 B = 0.001693 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.585025 B =16535.770187 C =17017.541216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.263 3.737 5 C -0.543 4.543 6 H 0.055 0.945 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.259 1.259 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.491 3.509 14 O -0.590 6.590 15 C 0.062 3.938 16 N -0.694 5.694 17 C 0.062 3.938 18 C 0.128 3.872 19 N -0.713 5.713 20 C 0.538 3.462 21 O -0.581 6.581 22 C -0.195 4.195 23 H 0.153 0.847 24 C -0.145 4.145 25 C -0.106 4.106 26 H 0.140 0.860 27 C -0.075 4.075 28 C -0.145 4.145 29 C -0.139 4.139 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.021 0.979 36 H -0.007 1.007 37 H 0.267 0.733 38 H 0.085 0.915 39 H 0.125 0.875 40 H 0.345 0.655 41 H 0.060 0.940 42 H 0.099 0.901 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.418 0.582 46 H 0.130 0.870 47 H 0.080 0.920 48 H 0.054 0.946 49 H 0.067 0.933 50 H 0.046 0.954 51 H 0.038 0.962 52 H 0.060 0.940 53 H 0.049 0.951 54 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.120 -12.837 30.910 34.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.141 3.859 5 C -0.582 4.582 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.183 1.183 11 H -0.205 1.205 12 H -0.204 1.204 13 C 0.279 3.721 14 O -0.470 6.470 15 C -0.070 4.070 16 N -0.327 5.327 17 C -0.067 4.067 18 C 0.003 3.997 19 N -0.366 5.366 20 C 0.327 3.673 21 O -0.462 6.462 22 C -0.216 4.216 23 H 0.171 0.829 24 C -0.183 4.183 25 C -0.125 4.125 26 H 0.157 0.843 27 C -0.093 4.093 28 C -0.203 4.203 29 C -0.196 4.196 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.122 0.878 35 H 0.039 0.961 36 H 0.011 0.989 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.143 0.857 40 H 0.163 0.837 41 H 0.078 0.922 42 H 0.117 0.883 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.255 0.745 46 H 0.148 0.852 47 H 0.099 0.901 48 H 0.072 0.928 49 H 0.086 0.914 50 H 0.065 0.935 51 H 0.057 0.943 52 H 0.079 0.921 53 H 0.068 0.932 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.266 -11.056 30.657 33.622 hybrid contribution 1.609 -0.256 -1.234 2.044 sum -6.657 -11.312 29.423 32.218 Atomic orbital electron populations 1.22161 0.94639 1.03504 1.01647 1.21765 0.95266 0.81221 1.04020 1.48279 1.64067 1.15158 1.06102 1.18662 0.95229 0.91412 0.80600 1.21697 0.97904 1.32036 1.06523 0.92722 1.25893 1.02441 0.94501 0.96507 1.70056 1.37835 1.34151 1.14779 0.85464 0.78951 0.79059 0.77295 1.18292 1.20452 1.20411 1.21352 0.77391 0.86675 0.86667 1.90653 1.47743 1.20647 1.87942 1.21807 1.04648 0.93926 0.86595 1.59940 1.32629 1.38831 1.01254 1.22052 1.03318 0.94929 0.86388 1.21012 1.00457 0.96000 0.82232 1.45669 1.68079 1.18268 1.04606 1.20117 0.75793 0.85571 0.85807 1.90709 1.47442 1.19936 1.88064 1.22407 1.10146 1.01397 0.87609 0.82912 1.23159 0.94632 1.03127 0.97342 1.22532 0.95317 0.95901 0.98724 0.84250 1.20739 0.98283 0.94556 0.95737 1.21862 0.99152 1.01620 0.97622 1.21773 1.00567 1.00343 0.96926 0.88491 0.91985 0.94639 0.91136 0.87796 0.96136 0.98931 0.92464 0.89709 0.85694 0.83701 0.92183 0.88321 0.92830 0.93193 0.74520 0.85227 0.90111 0.92772 0.91380 0.93464 0.94252 0.92060 0.93212 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 10.24 71.98 0.74 -3.01 16 2 C 0.10 2.85 5.93 86.38 0.51 3.36 16 3 N -0.60 -25.19 2.46 -826.16 -2.03 -27.22 16 4 C 0.26 14.36 5.16 85.63 0.44 14.81 16 5 C -0.54 -31.56 9.39 25.60 0.24 -31.32 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.32 5.46 84.66 0.46 0.78 16 8 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 9 Si 0.97 45.30 29.54 68.60 2.03 47.33 16 10 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 13 C 0.49 20.13 7.71 87.66 0.68 20.80 16 14 O -0.59 -31.19 15.78 -3.02 -0.05 -31.24 16 15 C 0.06 1.59 4.72 85.56 0.40 1.99 16 16 N -0.69 -18.12 6.13 -517.92 -3.17 -21.30 16 17 C 0.06 1.01 5.80 86.30 0.50 1.51 16 18 C 0.13 2.55 5.93 86.38 0.51 3.06 16 19 N -0.71 -10.58 5.56 -463.07 -2.57 -13.15 16 20 C 0.54 10.39 5.10 87.66 0.45 10.84 16 21 O -0.58 -16.77 13.67 -3.05 -0.04 -16.81 16 22 C -0.19 -2.26 6.10 -11.54 -0.07 -2.34 16 23 H 0.15 0.70 8.14 -2.39 -0.02 0.69 16 24 C -0.15 -1.70 9.69 30.60 0.30 -1.41 16 25 C -0.11 -1.19 5.12 -10.79 -0.06 -1.24 16 26 H 0.14 0.84 8.12 -2.39 -0.02 0.82 16 27 C -0.07 -1.21 2.31 -10.79 -0.02 -1.24 16 28 C -0.15 -2.58 8.74 71.98 0.63 -1.95 16 29 C -0.14 -1.68 9.16 71.98 0.66 -1.02 16 30 H 0.10 1.55 8.14 -2.38 -0.02 1.54 16 31 H 0.06 1.31 7.22 -2.39 -0.02 1.29 16 32 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 34 H 0.10 2.12 6.44 -2.39 -0.02 2.11 16 35 H 0.02 1.15 8.07 -2.39 -0.02 1.13 16 36 H -0.01 -0.48 7.42 -2.38 -0.02 -0.49 16 37 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 38 H 0.09 1.70 7.40 -2.39 -0.02 1.68 16 39 H 0.13 2.50 7.19 -2.39 -0.02 2.48 16 40 H 0.34 10.24 8.43 -89.70 -0.76 9.48 16 41 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 42 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.42 3.00 8.47 -92.71 -0.79 2.21 16 46 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.08 1.40 7.76 -2.38 -0.02 1.38 16 48 H 0.05 1.25 6.66 -2.39 -0.02 1.23 16 49 H 0.07 0.93 8.11 -2.38 -0.02 0.92 16 50 H 0.05 0.88 8.11 -2.39 -0.02 0.86 16 51 H 0.04 0.86 5.10 -2.39 -0.01 0.85 16 52 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 53 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 54 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -84.42 432.57 0.16 -84.26 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -0.66 Total: 21.26 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: 6.37 Total: 13.63 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -7.49 Total: -118.43 kcal Atomic # 8 Polarization: -47.96 SS G_CDS: -0.09 Total: -48.05 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -84.42 0.16 -84.26 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136062294.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.386 kcal (2) G-P(sol) polarization free energy of solvation -84.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds