Wall clock time and date at job start Sat Apr 11 2020 05:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46508 * 109.46978 * 2 1 4 4 C 1.46493 * 120.00070 * 269.99833 * 3 2 1 5 5 C 1.50700 * 109.46976 * 270.00258 * 4 3 2 6 6 H 1.07998 * 120.00295 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99625 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99611 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00225 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47010 * 90.00492 * 9 7 5 11 11 H 1.48504 * 109.47163 * 209.99934 * 9 7 5 12 12 H 1.48491 * 109.47275 * 330.00208 * 9 7 5 13 13 C 1.34779 * 119.99720 * 89.99975 * 3 2 1 14 14 O 1.21273 * 119.99930 * 179.97438 * 13 3 2 15 15 C 1.50703 * 120.00226 * 359.97438 * 13 3 2 16 16 N 1.46894 * 109.47094 * 180.02562 * 15 13 3 17 17 C 1.46905 * 111.00136 * 180.02562 * 16 15 13 18 18 C 1.52993 * 109.47075 * 180.02562 * 17 16 15 19 19 N 1.46511 * 109.46790 * 179.97438 * 18 17 16 20 20 C 1.34772 * 119.99789 * 180.02562 * 19 18 17 21 21 O 1.21285 * 120.00250 * 359.97438 * 20 19 18 22 22 C 1.50700 * 119.99895 * 180.02562 * 20 19 18 23 23 H 1.09002 * 115.54929 * 325.57943 * 22 20 19 24 24 C 1.53005 * 117.49884 * 111.24924 * 22 20 19 25 25 C 1.52999 * 117.51845 * 179.88026 * 22 20 19 26 26 H 1.09003 * 117.50034 * 0.02562 * 25 22 20 27 27 C 1.52994 * 117.50151 * 145.02652 * 25 22 20 28 28 C 1.52999 * 109.47322 * 179.97438 * 27 25 22 29 29 C 1.53007 * 109.47281 * 300.00078 * 27 25 22 30 30 H 1.09003 * 109.47310 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47388 * 300.00326 * 1 2 3 32 32 H 1.09001 * 109.47091 * 59.99961 * 1 2 3 33 33 H 1.08993 * 109.47061 * 240.00173 * 2 1 3 34 34 H 1.09004 * 109.46824 * 119.99579 * 2 1 3 35 35 H 1.09001 * 109.47010 * 30.00096 * 4 3 2 36 36 H 1.09002 * 109.47001 * 150.00135 * 4 3 2 37 37 H 0.97007 * 119.99674 * 179.97438 * 8 7 5 38 38 H 1.09008 * 109.46865 * 60.00135 * 15 13 3 39 39 H 1.09000 * 109.47047 * 300.00311 * 15 13 3 40 40 H 1.00899 * 111.00492 * 303.95504 * 16 15 13 41 41 H 1.09001 * 109.46729 * 59.99916 * 17 16 15 42 42 H 1.09006 * 109.46862 * 300.00385 * 17 16 15 43 43 H 1.09001 * 109.47414 * 60.00331 * 18 17 16 44 44 H 1.08997 * 109.47445 * 299.99770 * 18 17 16 45 45 H 0.96996 * 119.99709 * 0.02562 * 19 18 17 46 46 H 1.09004 * 117.49360 * 215.00203 * 24 22 20 47 47 H 1.08995 * 117.49694 * 359.97438 * 24 22 20 48 48 H 1.09008 * 109.47363 * 59.99783 * 27 25 22 49 49 H 1.09005 * 109.46944 * 60.00541 * 28 27 25 50 50 H 1.09003 * 109.47249 * 179.97438 * 28 27 25 51 51 H 1.08993 * 109.47453 * 299.99950 * 28 27 25 52 52 H 1.08995 * 109.46840 * 299.99917 * 29 27 25 53 53 H 1.09001 * 109.46646 * 59.99344 * 29 27 25 54 54 H 1.08998 * 109.46999 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7036 6 1 4.3428 1.2309 -1.0957 7 6 4.1493 2.3905 -2.8773 8 7 5.3916 2.1843 -3.2567 9 14 3.0131 3.4361 -3.9286 10 1 3.1158 4.8562 -3.5067 11 1 3.4068 3.3138 -5.3553 12 1 1.6136 2.9694 -3.7595 13 6 2.2429 2.0166 1.1673 14 8 2.6475 3.1598 1.1673 15 6 1.9912 1.3064 2.4724 16 7 2.3089 2.2065 3.5889 17 6 2.0755 1.5462 4.8803 18 6 2.4160 2.5129 6.0162 19 7 2.1826 1.8546 7.3041 20 6 2.4160 2.5196 8.4529 21 8 2.8197 3.6628 8.4205 22 6 2.1766 1.8422 9.7776 23 1 1.3409 1.1429 9.8037 24 6 3.4009 1.5124 10.6339 25 6 2.4627 2.6487 11.0459 26 1 2.8239 3.6697 10.9223 27 6 1.5541 2.4120 12.2537 28 6 2.0017 3.3060 13.4118 29 6 0.1092 2.7477 11.8786 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.5817 1.6877 -2.0283 36 1 2.0955 3.1411 -1.1383 37 1 5.7177 2.5748 -4.0827 38 1 2.6211 0.4186 2.5303 39 1 0.9431 1.0126 2.5299 40 1 3.2572 2.5447 3.5223 41 1 2.7066 0.6607 4.9548 42 1 1.0281 1.2533 4.9545 43 1 1.7845 3.3983 5.9415 44 1 3.4631 2.8062 5.9421 45 1 1.8601 0.9402 7.3299 46 1 3.3705 0.5960 11.2234 47 1 4.3795 1.7849 10.2389 48 1 1.6173 1.3667 12.5567 49 1 1.9387 4.3513 13.1092 50 1 1.3540 3.1376 14.2722 51 1 3.0309 3.0665 13.6790 52 1 0.0459 3.7928 11.5757 53 1 -0.2094 2.1104 11.0537 54 1 -0.5382 2.5785 12.7391 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136062295.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:39 Heat of formation + Delta-G solvation = -85.545695 kcal Electronic energy + Delta-G solvation = -28671.576717 eV Core-core repulsion = 24642.623581 eV Total energy + Delta-G solvation = -4028.953136 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.15590 -40.77296 -38.68313 -37.53653 -36.88742 -35.37610 -34.81595 -34.21084 -31.95969 -30.90318 -29.53156 -28.01808 -27.07032 -25.11003 -24.35667 -23.80414 -23.57293 -23.03591 -21.30449 -20.61140 -19.93277 -19.11295 -18.43991 -17.85399 -17.51130 -17.23726 -16.98129 -16.48484 -16.28999 -15.90607 -15.63602 -15.28369 -15.06740 -14.98196 -14.70944 -14.55842 -14.42728 -14.33802 -13.98407 -13.71916 -13.63178 -13.50643 -13.42429 -13.31373 -13.14860 -13.01402 -12.67761 -12.54189 -12.46821 -12.34238 -12.17451 -12.04791 -12.03903 -11.87352 -11.74906 -11.56235 -11.24547 -11.06609 -10.85678 -10.84223 -10.63705 -10.17719 -9.47899 -9.38638 -8.35509 -6.40138 1.31013 1.35609 1.43503 1.44914 1.82878 1.92545 2.29567 2.32556 2.84896 2.99268 3.26645 3.63877 3.68717 3.75365 3.81857 3.87972 4.06351 4.10650 4.11886 4.20436 4.33668 4.37994 4.39990 4.44784 4.45477 4.50067 4.66530 4.68053 4.80639 4.83329 4.84536 4.87195 4.89395 4.93189 4.97249 5.02761 5.03626 5.04652 5.07566 5.22410 5.28653 5.34245 5.41351 5.44116 5.47095 5.54585 5.65649 5.85425 6.18056 6.23806 6.51929 6.61089 6.75239 7.21271 7.22346 7.46408 8.81355 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023696 B = 0.001529 C = 0.001489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.354676 B =18308.679280 C =18796.924143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.602 5.602 4 C 0.226 3.774 5 C -0.536 4.536 6 H 0.030 0.970 7 C 0.012 3.988 8 N -0.945 5.945 9 Si 0.946 3.054 10 H -0.279 1.279 11 H -0.274 1.274 12 H -0.238 1.238 13 C 0.493 3.507 14 O -0.586 6.586 15 C 0.061 3.939 16 N -0.692 5.692 17 C 0.062 3.938 18 C 0.125 3.875 19 N -0.709 5.709 20 C 0.534 3.466 21 O -0.592 6.592 22 C -0.186 4.186 23 H 0.155 0.845 24 C -0.136 4.136 25 C -0.122 4.122 26 H 0.086 0.914 27 C -0.060 4.060 28 C -0.147 4.147 29 C -0.148 4.148 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.047 0.953 36 H 0.014 0.986 37 H 0.268 0.732 38 H 0.081 0.919 39 H 0.130 0.870 40 H 0.344 0.656 41 H 0.059 0.941 42 H 0.102 0.898 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.420 0.580 46 H 0.134 0.866 47 H 0.085 0.915 48 H 0.091 0.909 49 H 0.044 0.956 50 H 0.067 0.933 51 H 0.058 0.942 52 H 0.040 0.960 53 H 0.060 0.940 54 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.350 -11.205 30.855 35.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.333 5.333 4 C 0.104 3.896 5 C -0.574 4.574 6 H 0.048 0.952 7 C -0.186 4.186 8 N -0.585 5.585 9 Si 0.769 3.231 10 H -0.205 1.205 11 H -0.199 1.199 12 H -0.161 1.161 13 C 0.281 3.719 14 O -0.466 6.466 15 C -0.071 4.071 16 N -0.325 5.325 17 C -0.067 4.067 18 C 0.000 4.000 19 N -0.361 5.361 20 C 0.322 3.678 21 O -0.472 6.472 22 C -0.207 4.207 23 H 0.172 0.828 24 C -0.173 4.173 25 C -0.141 4.141 26 H 0.105 0.895 27 C -0.079 4.079 28 C -0.204 4.204 29 C -0.205 4.205 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.065 0.935 36 H 0.032 0.968 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.148 0.852 40 H 0.162 0.838 41 H 0.077 0.923 42 H 0.120 0.880 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.257 0.743 46 H 0.152 0.848 47 H 0.103 0.897 48 H 0.109 0.891 49 H 0.063 0.937 50 H 0.086 0.914 51 H 0.077 0.923 52 H 0.059 0.941 53 H 0.079 0.921 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.368 -9.496 30.637 35.146 hybrid contribution 1.117 0.126 -1.232 1.668 sum -13.251 -9.370 29.405 33.586 Atomic orbital electron populations 1.22164 0.93963 1.03659 1.02091 1.21795 0.95623 0.80972 1.04044 1.48063 1.64339 1.15250 1.05675 1.19250 0.94692 0.92913 0.82780 1.21585 0.97130 1.32037 1.06678 0.95202 1.25831 0.96670 0.97148 0.98983 1.70049 1.17364 1.46608 1.24506 0.85738 0.80534 0.78949 0.77869 1.20465 1.19873 1.16145 1.21337 0.77149 0.86694 0.86675 1.90652 1.47423 1.20643 1.87907 1.21822 1.04821 0.93853 0.86614 1.59983 1.32600 1.38660 1.01258 1.22058 1.03476 0.94834 0.86334 1.21066 1.00563 0.96163 0.82218 1.45649 1.67761 1.18162 1.04539 1.20342 0.75882 0.85498 0.86088 1.90709 1.47915 1.20287 1.88307 1.22308 1.04331 1.05785 0.88284 0.82795 1.23186 0.92887 1.00714 1.00503 1.22457 1.01324 0.96777 0.93494 0.89525 1.20744 0.93687 1.01075 0.92368 1.21820 1.01693 0.99122 0.97754 1.21844 0.95612 1.01164 1.01883 0.88630 0.91801 0.93814 0.91118 0.88263 0.93477 0.96775 0.92296 0.90096 0.85230 0.83793 0.92293 0.87992 0.92537 0.93246 0.74262 0.84802 0.89669 0.89066 0.93705 0.91403 0.92292 0.94122 0.92141 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 10.24 71.98 0.74 -2.50 16 2 C 0.10 2.65 5.93 86.38 0.51 3.16 16 3 N -0.60 -23.69 2.46 -826.16 -2.03 -25.72 16 4 C 0.23 11.08 4.23 85.63 0.36 11.44 16 5 C -0.54 -31.70 9.94 25.60 0.25 -31.44 16 6 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 7 C 0.01 0.70 5.47 84.65 0.46 1.16 16 8 N -0.95 -60.18 13.96 21.45 0.30 -59.88 16 9 Si 0.95 45.10 27.47 68.60 1.88 46.98 16 10 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16 13 C 0.49 19.43 7.71 87.66 0.68 20.11 16 14 O -0.59 -29.75 15.78 -3.01 -0.05 -29.80 16 15 C 0.06 1.51 4.72 85.56 0.40 1.91 16 16 N -0.69 -17.74 6.13 -517.92 -3.17 -20.91 16 17 C 0.06 0.99 5.80 86.30 0.50 1.49 16 18 C 0.12 2.50 5.93 86.37 0.51 3.01 16 19 N -0.71 -10.70 5.56 -463.05 -2.57 -13.27 16 20 C 0.53 10.86 7.61 87.66 0.67 11.52 16 21 O -0.59 -18.47 16.26 -3.04 -0.05 -18.52 16 22 C -0.19 -2.27 5.39 -11.54 -0.06 -2.33 16 23 H 0.15 0.90 7.61 -2.39 -0.02 0.89 16 24 C -0.14 -1.41 9.88 30.60 0.30 -1.11 16 25 C -0.12 -1.65 4.66 -10.79 -0.05 -1.70 16 26 H 0.09 1.74 7.64 -2.39 -0.02 1.72 16 27 C -0.06 -0.55 3.07 -10.79 -0.03 -0.58 16 28 C -0.15 -1.37 9.18 71.98 0.66 -0.71 16 29 C -0.15 -1.40 9.04 71.98 0.65 -0.75 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.16 7.22 -2.39 -0.02 1.14 16 32 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 2.12 8.07 -2.39 -0.02 2.10 16 34 H 0.10 2.02 6.44 -2.38 -0.02 2.00 16 35 H 0.05 2.13 7.13 -2.39 -0.02 2.11 16 36 H 0.01 0.76 6.85 -2.39 -0.02 0.74 16 37 H 0.27 15.88 8.31 -92.70 -0.77 15.10 16 38 H 0.08 1.65 7.40 -2.38 -0.02 1.64 16 39 H 0.13 2.39 7.18 -2.39 -0.02 2.37 16 40 H 0.34 10.23 8.43 -89.70 -0.76 9.48 16 41 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 43 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.42 2.98 8.47 -92.71 -0.79 2.19 16 46 H 0.13 0.62 8.05 -2.38 -0.02 0.60 16 47 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.09 0.51 7.90 -2.38 -0.02 0.49 16 49 H 0.04 0.53 8.14 -2.38 -0.02 0.51 16 50 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 51 H 0.06 0.52 8.14 -2.39 -0.02 0.51 16 52 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 53 H 0.06 0.50 7.29 -2.39 -0.02 0.48 16 54 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -87.31 436.91 0.15 -87.16 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -0.72 Total: 21.27 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 6.56 Total: 12.68 kcal Atomic # 7 Polarization: -112.30 SS G_CDS: -7.48 Total: -119.78 kcal Atomic # 8 Polarization: -48.22 SS G_CDS: -0.10 Total: -48.32 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.98 kcal Total: -87.31 0.15 -87.16 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136062295.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.613 kcal (2) G-P(sol) polarization free energy of solvation -87.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds