Wall clock time and date at job start Sat Apr 11 2020 05:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46900 * 109.47173 * 2 1 4 4 C 1.46906 * 110.99888 * 290.68879 * 3 2 1 5 5 C 1.50700 * 109.47093 * 85.85391 * 4 3 2 6 6 O 1.21285 * 120.00173 * 7.56858 * 5 4 3 7 7 N 1.34783 * 119.99495 * 187.56026 * 5 4 3 8 8 C 1.37089 * 119.99311 * 179.97438 * 7 5 4 9 9 H 1.08003 * 120.00752 * 0.02562 * 8 7 5 10 10 C 1.38954 * 119.99715 * 179.97438 * 8 7 5 11 11 N 1.31412 * 119.99890 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99983 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47020 * 60.00761 * 12 10 8 14 14 H 1.48502 * 109.47033 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47579 * 300.00340 * 12 10 8 16 16 C 1.46896 * 110.99727 * 166.73318 * 3 2 1 17 17 H 1.09004 * 109.47060 * 171.18913 * 16 3 2 18 18 C 1.52998 * 109.47142 * 51.19585 * 16 3 2 19 19 C 1.52998 * 109.47212 * 291.18948 * 16 3 2 20 20 N 1.46498 * 109.47208 * 304.99574 * 19 16 3 21 21 C 1.34775 * 119.99779 * 179.97438 * 20 19 16 22 22 O 1.21274 * 120.00554 * 0.02562 * 21 20 19 23 23 C 1.50700 * 119.99760 * 180.02562 * 21 20 19 24 24 C 1.52998 * 109.47189 * 180.02562 * 23 21 20 25 25 C 1.53000 * 109.47367 * 179.97438 * 24 23 21 26 26 C 1.53781 * 113.61572 * 274.13449 * 25 24 23 27 27 C 1.53949 * 87.01966 * 220.04617 * 26 25 24 28 28 C 1.53776 * 87.11206 * 25.36415 * 27 26 25 29 29 H 1.09000 * 109.46902 * 68.48350 * 1 2 3 30 30 H 1.09003 * 109.47340 * 188.48289 * 1 2 3 31 31 H 1.08997 * 109.46858 * 308.48788 * 1 2 3 32 32 H 1.08999 * 109.46601 * 120.00123 * 2 1 3 33 33 H 1.09001 * 109.46877 * 240.00136 * 2 1 3 34 34 H 1.08997 * 109.46482 * 205.85951 * 4 3 2 35 35 H 1.09003 * 109.46760 * 325.85191 * 4 3 2 36 36 H 0.96994 * 120.00148 * 0.02562 * 7 5 4 37 37 H 0.97003 * 120.00178 * 179.97438 * 11 10 8 38 38 H 1.08996 * 109.47824 * 59.99844 * 18 16 3 39 39 H 1.09005 * 109.47136 * 179.97438 * 18 16 3 40 40 H 1.09002 * 109.46788 * 299.99116 * 18 16 3 41 41 H 1.09003 * 109.46820 * 64.99727 * 19 16 3 42 42 H 1.08998 * 109.47147 * 184.99273 * 19 16 3 43 43 H 0.97001 * 120.00197 * 0.02562 * 20 19 16 44 44 H 1.09003 * 109.47311 * 299.99878 * 23 21 20 45 45 H 1.08998 * 109.47375 * 59.99865 * 23 21 20 46 46 H 1.09006 * 109.47247 * 299.99811 * 24 23 21 47 47 H 1.08998 * 109.47147 * 59.99634 * 24 23 21 48 48 H 1.08998 * 112.85065 * 45.33219 * 25 24 23 49 49 H 1.08996 * 113.61505 * 334.57071 * 26 25 24 50 50 H 1.09005 * 113.61227 * 105.46934 * 26 25 24 51 51 H 1.09004 * 113.54152 * 270.80814 * 27 26 25 52 52 H 1.09007 * 113.74096 * 139.94762 * 27 26 25 53 53 H 1.08997 * 113.61367 * 220.08655 * 28 27 26 54 54 H 1.09006 * 113.69207 * 89.19917 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7384 2.0428 -1.2830 5 6 0.3481 2.6236 -1.2556 6 8 -0.2889 2.6234 -0.2235 7 7 -0.1873 3.1434 -2.3780 8 6 -1.4523 3.6712 -2.3530 9 1 -2.0197 3.6710 -1.4340 10 6 -2.0042 4.2076 -3.5100 11 7 -1.3137 4.2084 -4.6281 12 14 -3.7280 4.9262 -3.4763 13 1 -3.7785 6.0460 -2.5023 14 1 -4.0812 5.4292 -4.8282 15 1 -4.6951 3.8744 -3.0718 16 6 3.4537 1.4363 0.3147 17 1 3.8245 2.4489 0.1558 18 6 4.2106 0.4674 -0.5958 19 6 3.6697 1.0375 1.7759 20 7 2.8510 1.8903 2.6411 21 6 2.8795 1.7193 3.9776 22 8 3.5832 0.8597 4.4642 23 6 2.0369 2.5962 4.8676 24 6 2.2530 2.1974 6.3288 25 6 1.3980 3.0882 7.2324 26 6 2.0767 4.4157 7.6090 27 6 1.4929 4.2210 9.0202 28 6 1.4781 2.7126 8.7215 29 1 -0.3633 0.3769 -0.9561 30 1 -0.3634 -1.0164 0.1516 31 1 -0.3633 0.6396 0.8044 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 2.4624 2.8406 -1.4486 35 1 1.8115 1.3129 -2.0893 36 1 0.3220 3.1433 -3.2034 37 1 -1.6990 4.5825 -5.4359 38 1 4.0568 0.7515 -1.6368 39 1 5.2748 0.5058 -0.3626 40 1 3.8399 -0.5453 -0.4369 41 1 3.3811 -0.0045 1.9146 42 1 4.7214 1.1606 2.0345 43 1 2.2879 2.5776 2.2520 44 1 2.3253 3.6382 4.7293 45 1 0.9853 2.4729 4.6087 46 1 1.9648 1.1554 6.4675 47 1 3.3046 2.3210 6.5874 48 1 0.3782 3.2075 6.8665 49 1 3.1654 4.3739 7.5772 50 1 1.6697 5.2790 7.0824 51 1 0.4992 4.6516 9.1435 52 1 2.1777 4.5009 9.8209 53 1 0.5887 2.2029 9.0917 54 1 2.4023 2.2030 8.9942 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152611708.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:05 Heat of formation + Delta-G solvation = -84.475340 kcal Electronic energy + Delta-G solvation = -30263.784549 eV Core-core repulsion = 26234.877827 eV Total energy + Delta-G solvation = -4028.906722 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.00886 -40.39722 -39.58217 -38.76439 -35.90100 -35.32653 -33.73109 -33.17449 -32.72823 -31.11951 -28.24273 -27.99271 -26.53833 -26.25624 -25.79332 -23.78208 -22.86646 -21.30523 -20.96740 -20.38905 -20.22603 -19.73942 -18.03749 -17.61393 -17.22053 -17.09803 -16.64553 -16.50116 -16.30541 -16.14395 -15.78734 -15.50424 -15.30305 -14.77364 -14.65906 -14.32331 -14.16275 -13.78641 -13.65463 -13.60036 -13.47403 -13.45428 -13.27169 -13.16968 -12.97110 -12.83556 -12.82433 -12.47544 -12.36329 -12.25854 -12.12324 -12.03470 -11.88528 -11.83387 -11.62249 -11.39635 -11.29749 -11.14049 -10.96809 -10.69683 -10.13559 -9.93011 -9.87541 -9.15334 -8.39071 -5.85686 1.42183 1.43476 1.53377 1.73844 2.20136 2.30376 2.36747 2.75676 3.28746 3.55167 3.70370 3.75638 3.79492 3.81001 4.00881 4.02169 4.06025 4.13102 4.29318 4.29787 4.35756 4.41809 4.49283 4.53538 4.63195 4.65131 4.66016 4.69951 4.73647 4.78284 4.85828 4.88721 4.91981 4.94018 4.94301 5.04181 5.06046 5.11374 5.17352 5.20593 5.28507 5.32432 5.47148 5.47266 5.55033 5.60410 5.69020 5.95719 6.17181 6.23223 6.68332 6.71766 7.23801 7.34895 7.70159 8.27174 8.78376 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009581 B = 0.002540 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2921.690919 B =11018.863043 C =13236.141680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.063 3.937 3 N -0.520 5.520 4 C 0.057 3.943 5 C 0.449 3.551 6 O -0.597 6.597 7 N -0.585 5.585 8 C -0.320 4.320 9 H 0.079 0.921 10 C -0.017 4.017 11 N -0.925 5.925 12 Si 0.986 3.014 13 H -0.272 1.272 14 H -0.275 1.275 15 H -0.275 1.275 16 C 0.072 3.928 17 H 0.098 0.902 18 C -0.179 4.179 19 C 0.134 3.866 20 N -0.711 5.711 21 C 0.507 3.493 22 O -0.592 6.592 23 C -0.135 4.135 24 C -0.084 4.084 25 C -0.113 4.113 26 C -0.139 4.139 27 C -0.141 4.141 28 C -0.140 4.140 29 H 0.024 0.976 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.045 0.955 34 H 0.106 0.894 35 H 0.067 0.933 36 H 0.392 0.608 37 H 0.274 0.726 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.414 0.586 44 H 0.108 0.892 45 H 0.099 0.901 46 H 0.053 0.947 47 H 0.059 0.941 48 H 0.092 0.908 49 H 0.079 0.921 50 H 0.070 0.930 51 H 0.083 0.917 52 H 0.071 0.929 53 H 0.068 0.932 54 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.286 -3.258 15.519 19.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.064 4.064 3 N -0.244 5.244 4 C -0.074 4.074 5 C 0.236 3.764 6 O -0.481 6.481 7 N -0.223 5.223 8 C -0.450 4.450 9 H 0.097 0.903 10 C -0.216 4.216 11 N -0.567 5.567 12 Si 0.811 3.189 13 H -0.197 1.197 14 H -0.200 1.200 15 H -0.200 1.200 16 C -0.036 4.036 17 H 0.116 0.884 18 C -0.238 4.238 19 C 0.009 3.991 20 N -0.361 5.361 21 C 0.295 3.705 22 O -0.474 6.474 23 C -0.175 4.175 24 C -0.122 4.122 25 C -0.132 4.132 26 C -0.176 4.176 27 C -0.178 4.178 28 C -0.177 4.177 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.064 0.936 34 H 0.124 0.876 35 H 0.085 0.915 36 H 0.225 0.775 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.250 0.750 44 H 0.126 0.874 45 H 0.117 0.883 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.111 0.889 49 H 0.098 0.902 50 H 0.088 0.912 51 H 0.102 0.898 52 H 0.089 0.911 53 H 0.086 0.914 54 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.056 -3.540 16.722 20.357 hybrid contribution -0.632 0.151 -1.659 1.781 sum 10.425 -3.389 15.063 18.630 Atomic orbital electron populations 1.21723 0.96068 0.99992 1.01207 1.22075 0.94980 0.88428 1.00908 1.61603 1.14995 1.16952 1.30871 1.21770 0.94430 0.99591 0.91594 1.20732 0.89620 0.82404 0.83603 1.90484 1.64135 1.61237 1.32246 1.41958 1.15265 1.54313 1.10788 1.19551 0.92577 1.36066 0.96821 0.90300 1.25938 1.03217 0.98050 0.94402 1.69669 1.39403 1.46943 1.00711 0.85077 0.77847 0.78513 0.77454 1.19714 1.19985 1.20006 1.22091 0.86587 1.01274 0.93669 0.88391 1.22383 1.01793 0.99766 0.99840 1.21366 0.95071 0.94295 0.88334 1.45967 1.46351 1.38050 1.05774 1.21184 0.82081 0.84114 0.83096 1.90640 1.44114 1.36986 1.75624 1.21678 1.00660 1.00418 0.94729 1.21210 0.99816 0.99096 0.92043 1.22604 0.99655 0.96063 0.94829 1.23029 1.00326 0.97276 0.96984 1.22839 1.01641 0.96135 0.97175 1.22951 1.02214 0.96958 0.95614 0.95662 0.92477 0.93063 0.90304 0.93650 0.87572 0.91543 0.77466 0.91679 0.91699 0.90140 0.91948 0.92621 0.90651 0.74993 0.87392 0.88310 0.92831 0.92192 0.88936 0.90190 0.91172 0.89797 0.91055 0.91363 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 8.42 71.98 0.61 -3.87 16 2 C 0.06 1.71 4.36 86.31 0.38 2.09 16 3 N -0.52 -14.08 3.40 -875.50 -2.98 -17.05 16 4 C 0.06 1.76 4.70 85.56 0.40 2.16 16 5 C 0.45 19.56 6.11 87.66 0.54 20.10 16 6 O -0.60 -29.67 13.25 -3.05 -0.04 -29.71 16 7 N -0.58 -28.57 5.29 -306.98 -1.62 -30.19 16 8 C -0.32 -17.57 9.68 84.04 0.81 -16.76 16 9 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 10 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 11 N -0.93 -49.50 13.05 21.66 0.28 -49.21 16 12 Si 0.99 42.57 29.55 68.60 2.03 44.59 16 13 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 14 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 15 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 16 C 0.07 1.46 2.41 44.91 0.11 1.56 16 17 H 0.10 1.84 7.71 -2.38 -0.02 1.82 16 18 C -0.18 -2.91 8.46 71.98 0.61 -2.30 16 19 C 0.13 2.93 4.95 86.38 0.43 3.35 16 20 N -0.71 -17.11 5.39 -463.08 -2.50 -19.61 16 21 C 0.51 13.25 7.83 87.66 0.69 13.94 16 22 O -0.59 -19.39 15.98 -3.01 -0.05 -19.44 16 23 C -0.14 -2.75 5.70 29.85 0.17 -2.58 16 24 C -0.08 -1.68 4.33 30.59 0.13 -1.55 16 25 C -0.11 -1.86 3.64 -10.27 -0.04 -1.90 16 26 C -0.14 -2.05 7.65 31.18 0.24 -1.81 16 27 C -0.14 -1.90 8.09 31.18 0.25 -1.64 16 28 C -0.14 -2.12 7.65 31.12 0.24 -1.88 16 29 H 0.02 0.98 6.33 -2.39 -0.02 0.97 16 30 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.05 2.02 6.98 -2.39 -0.02 2.00 16 32 H 0.08 1.98 6.24 -2.39 -0.01 1.96 16 33 H 0.05 1.10 6.74 -2.39 -0.02 1.09 16 34 H 0.11 2.80 7.52 -2.39 -0.02 2.79 16 35 H 0.07 1.89 7.57 -2.39 -0.02 1.87 16 36 H 0.39 18.50 7.90 -92.71 -0.73 17.77 16 37 H 0.27 13.88 8.31 -92.71 -0.77 13.10 16 38 H 0.06 1.06 7.56 -2.39 -0.02 1.05 16 39 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.06 1.04 6.61 -2.39 -0.02 1.02 16 41 H 0.06 1.34 6.62 -2.39 -0.02 1.32 16 42 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.41 10.18 8.14 -92.71 -0.75 9.42 16 44 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.05 1.23 8.10 -2.38 -0.02 1.21 16 47 H 0.06 1.29 7.83 -2.39 -0.02 1.28 16 48 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.08 1.18 7.92 -2.39 -0.02 1.17 16 50 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 51 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 52 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 53 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 54 H 0.08 1.21 8.10 -2.38 -0.02 1.19 16 Total: -1.00 -66.33 421.42 0.56 -65.77 By element: Atomic # 1 Polarization: 46.96 SS G_CDS: -0.59 Total: 46.37 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 6.03 Total: 8.48 kcal Atomic # 7 Polarization: -109.26 SS G_CDS: -6.81 Total: -116.07 kcal Atomic # 8 Polarization: -49.06 SS G_CDS: -0.09 Total: -49.15 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Total: -66.33 0.56 -65.77 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152611708.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.703 kcal (2) G-P(sol) polarization free energy of solvation -66.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds