Wall clock time and date at job start Sat Apr 11 2020 05:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47241 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47303 * 119.99759 * 9 7 5 12 12 H 1.48495 * 109.47340 * 239.99921 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46921 * 179.97438 * 15 13 3 17 17 C 1.46893 * 111.00243 * 293.95400 * 16 15 13 18 18 C 1.46906 * 110.99853 * 169.99766 * 16 15 13 19 19 C 1.53003 * 109.47132 * 190.00109 * 18 16 15 20 20 H 1.08995 * 109.47113 * 295.00056 * 19 18 16 21 21 C 1.53001 * 109.46975 * 175.00342 * 19 18 16 22 22 N 1.46499 * 109.46870 * 54.99989 * 19 18 16 23 23 C 1.34776 * 119.99925 * 204.99532 * 22 19 18 24 24 O 1.21281 * 119.99686 * 0.02562 * 23 22 19 25 25 C 1.50695 * 120.00206 * 180.02562 * 23 22 19 26 26 H 1.09007 * 115.54559 * 34.33834 * 25 23 22 27 27 C 1.53001 * 117.50295 * 248.62846 * 25 23 22 28 28 C 1.52998 * 117.49993 * 180.02562 * 25 23 22 29 29 H 1.08997 * 117.49833 * 359.97438 * 28 25 23 30 30 C 1.52996 * 117.50045 * 214.97979 * 28 25 23 31 31 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 32 32 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 33 33 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 35 35 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 36 36 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 37 37 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 38 38 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 39 39 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 40 40 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 41 41 H 1.08999 * 109.47439 * 60.00146 * 17 16 15 42 42 H 1.08997 * 109.47257 * 180.02562 * 17 16 15 43 43 H 1.09006 * 109.46808 * 299.99830 * 17 16 15 44 44 H 1.09000 * 109.47257 * 310.00208 * 18 16 15 45 45 H 1.09006 * 109.46871 * 70.00245 * 18 16 15 46 46 H 1.08996 * 109.47326 * 59.99607 * 21 19 18 47 47 H 1.08991 * 109.47017 * 180.02562 * 21 19 18 48 48 H 1.09007 * 109.46587 * 299.99984 * 21 19 18 49 49 H 0.96996 * 120.00352 * 25.00321 * 22 19 18 50 50 H 1.09000 * 117.49629 * 359.97438 * 27 25 23 51 51 H 1.08996 * 117.49874 * 145.02263 * 27 25 23 52 52 H 1.08999 * 109.47302 * 60.00414 * 30 28 25 53 53 H 1.09001 * 109.47412 * 180.02562 * 30 28 25 54 54 H 1.09000 * 109.47400 * 300.00625 * 30 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 6.6009 1.2405 -2.4169 11 1 5.9202 1.4163 -4.7380 12 1 6.6210 3.3964 -3.5262 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3108 2.2058 3.5889 17 6 3.7475 2.5096 3.6267 18 6 1.8585 1.6397 4.8668 19 6 1.9778 2.6989 5.9645 20 1 3.0279 2.9489 6.1155 21 6 1.3916 2.1513 7.2673 22 7 1.2421 3.9011 5.5651 23 6 1.5857 5.1013 6.0729 24 8 2.5043 5.1860 6.8603 25 6 0.8285 6.3379 5.6626 26 1 -0.2358 6.1965 5.4741 27 6 1.5677 7.3669 4.8049 28 6 1.2671 7.6702 6.2736 29 1 2.1031 7.6522 6.9728 30 6 0.1784 8.7025 6.5733 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 1.5818 1.6876 -2.0283 37 1 2.0956 3.1410 -1.1384 38 1 3.6747 3.5148 -4.4447 39 1 0.9443 1.0114 2.5302 40 1 2.6227 0.4186 2.5299 41 1 4.0417 2.9917 2.6945 42 1 3.9559 3.1770 4.4629 43 1 4.3112 1.5849 3.7513 44 1 0.8188 1.3250 4.7771 45 1 2.4777 0.7799 5.1227 46 1 1.9390 1.2568 7.5644 47 1 1.4762 2.9060 8.0492 48 1 0.3414 1.9012 7.1163 49 1 0.5076 3.8333 4.9352 50 1 2.6019 7.1496 4.5378 51 1 0.9898 7.9026 4.0518 52 1 -0.5358 8.2822 7.2814 53 1 0.6327 9.5957 7.0020 54 1 -0.3374 8.9651 5.6498 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001406650310.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:56 Heat of formation + Delta-G solvation = -69.370339 kcal Electronic energy + Delta-G solvation = -30717.811089 eV Core-core repulsion = 26689.559369 eV Total energy + Delta-G solvation = -4028.251720 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.18844 -40.75271 -38.79857 -37.61002 -36.83594 -35.70516 -34.88128 -32.19682 -31.57765 -30.12647 -29.50230 -28.35221 -27.96134 -25.60365 -24.99680 -24.22206 -23.24546 -22.00811 -21.36370 -20.95314 -19.79172 -18.63999 -18.47122 -17.91197 -17.35012 -17.21244 -16.71135 -16.26923 -16.12469 -15.75587 -15.65818 -15.55419 -14.92341 -14.78117 -14.60804 -14.35642 -14.31781 -14.11093 -13.78336 -13.67025 -13.58182 -13.38122 -13.29170 -13.10510 -12.98397 -12.94416 -12.78946 -12.75093 -12.66350 -12.47651 -12.43272 -12.33180 -12.13356 -11.80324 -11.73629 -11.66612 -11.31310 -11.05552 -10.76002 -10.65064 -10.45340 -9.97983 -9.37014 -9.25853 -8.22221 -6.36737 1.34146 1.36917 1.47957 1.54542 1.93650 2.19031 2.27695 2.40933 2.89308 2.99992 3.07092 3.71961 3.74392 3.79418 3.83039 3.88063 4.11438 4.14663 4.20632 4.24087 4.34807 4.40153 4.40687 4.45410 4.49883 4.52873 4.65213 4.71048 4.74431 4.77204 4.80700 4.87002 4.94063 4.97673 5.00256 5.02933 5.06764 5.09320 5.14630 5.19143 5.24817 5.29014 5.41263 5.43690 5.60118 5.60406 5.86125 5.93801 6.08497 6.09906 6.65029 6.72388 6.89715 7.30185 7.33014 7.60989 8.84513 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010855 B = 0.002763 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.753286 B =10129.943119 C =11309.238930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.265 3.735 5 C -0.538 4.538 6 H 0.050 0.950 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.964 3.036 10 H -0.268 1.268 11 H -0.269 1.269 12 H -0.283 1.283 13 C 0.495 3.505 14 O -0.579 6.579 15 C 0.052 3.948 16 N -0.533 5.533 17 C 0.030 3.970 18 C 0.050 3.950 19 C 0.144 3.856 20 H 0.058 0.942 21 C -0.151 4.151 22 N -0.694 5.694 23 C 0.538 3.462 24 O -0.593 6.593 25 C -0.190 4.190 26 H 0.147 0.853 27 C -0.152 4.152 28 C -0.121 4.121 29 H 0.094 0.906 30 C -0.117 4.117 31 H 0.065 0.935 32 H 0.035 0.965 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.019 0.981 37 H -0.006 1.006 38 H 0.266 0.734 39 H 0.133 0.867 40 H 0.079 0.921 41 H 0.050 0.950 42 H 0.059 0.941 43 H 0.033 0.967 44 H 0.111 0.889 45 H 0.068 0.932 46 H 0.081 0.919 47 H 0.041 0.959 48 H 0.078 0.922 49 H 0.413 0.587 50 H 0.074 0.926 51 H 0.121 0.879 52 H 0.069 0.931 53 H 0.070 0.930 54 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.144 -4.427 20.835 24.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.339 5.339 4 C 0.143 3.857 5 C -0.577 4.577 6 H 0.069 0.931 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.789 3.211 10 H -0.192 1.192 11 H -0.194 1.194 12 H -0.209 1.209 13 C 0.284 3.716 14 O -0.458 6.458 15 C -0.078 4.078 16 N -0.257 5.257 17 C -0.119 4.119 18 C -0.077 4.077 19 C 0.039 3.961 20 H 0.076 0.924 21 C -0.210 4.210 22 N -0.344 5.344 23 C 0.326 3.674 24 O -0.475 6.475 25 C -0.211 4.211 26 H 0.165 0.835 27 C -0.189 4.189 28 C -0.140 4.140 29 H 0.112 0.888 30 C -0.174 4.174 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.037 0.963 37 H 0.013 0.987 38 H 0.075 0.925 39 H 0.151 0.849 40 H 0.097 0.903 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.051 0.949 44 H 0.129 0.871 45 H 0.086 0.914 46 H 0.100 0.900 47 H 0.060 0.940 48 H 0.097 0.903 49 H 0.249 0.751 50 H 0.093 0.907 51 H 0.139 0.861 52 H 0.088 0.912 53 H 0.089 0.911 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.563 -3.298 21.126 23.848 hybrid contribution 1.436 -0.453 -1.158 1.899 sum -9.127 -3.751 19.968 22.273 Atomic orbital electron populations 1.22147 0.94408 1.03432 1.01791 1.21731 0.95429 0.81400 1.03699 1.48286 1.64399 1.15043 1.06162 1.18626 0.94973 0.91451 0.80610 1.21725 0.97970 1.31661 1.06295 0.93136 1.25829 1.02168 0.94601 0.96560 1.70056 1.37582 1.34377 1.14789 0.85416 0.79310 0.77936 0.78428 1.19223 1.19368 1.20940 1.21229 0.77396 0.86721 0.86301 1.90626 1.46997 1.20508 1.87690 1.22037 1.04720 0.93691 0.87389 1.61505 1.16810 1.44590 1.02816 1.22334 0.87728 0.99765 1.02033 1.22572 1.03214 0.95174 0.86780 1.21005 0.96179 0.84551 0.94392 0.92410 1.22056 1.02465 1.01189 0.95295 1.45728 1.36526 1.05900 1.46235 1.20044 0.82793 0.84994 0.79585 1.90637 1.32378 1.87096 1.37375 1.22387 1.01289 0.88911 1.08539 0.83497 1.23080 1.00610 1.00516 0.94738 1.22375 1.01480 0.94411 0.95725 0.88805 1.21394 0.96464 0.97011 1.02561 0.91643 0.94591 0.88718 0.91450 0.88207 0.96256 0.98741 0.92482 0.84887 0.90332 0.93166 0.92227 0.94877 0.87091 0.91414 0.89977 0.93962 0.90323 0.75128 0.90715 0.86099 0.91189 0.91063 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 10.24 71.98 0.74 -2.80 16 2 C 0.10 2.82 5.93 86.38 0.51 3.34 16 3 N -0.61 -24.76 2.46 -826.16 -2.03 -26.78 16 4 C 0.27 14.23 5.16 85.64 0.44 14.67 16 5 C -0.54 -31.05 9.39 25.60 0.24 -30.81 16 6 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 7 C 0.01 0.42 5.46 84.65 0.46 0.88 16 8 N -0.93 -56.48 13.29 21.45 0.28 -56.20 16 9 Si 0.96 45.33 29.54 68.60 2.03 47.36 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 13 C 0.50 19.65 7.40 87.66 0.65 20.29 16 14 O -0.58 -29.41 13.89 -3.03 -0.04 -29.45 16 15 C 0.05 1.31 4.00 85.56 0.34 1.65 16 16 N -0.53 -13.55 4.22 -927.03 -3.92 -17.47 16 17 C 0.03 0.91 9.01 127.69 1.15 2.06 16 18 C 0.05 0.81 4.52 86.30 0.39 1.20 16 19 C 0.14 2.82 2.36 44.99 0.11 2.92 16 20 H 0.06 1.50 6.15 -2.39 -0.01 1.48 16 21 C -0.15 -2.25 9.48 71.98 0.68 -1.57 16 22 N -0.69 -14.91 4.80 -442.54 -2.12 -17.03 16 23 C 0.54 14.28 7.58 87.66 0.66 14.95 16 24 O -0.59 -20.31 15.92 -3.03 -0.05 -20.35 16 25 C -0.19 -4.05 5.91 -11.54 -0.07 -4.12 16 26 H 0.15 2.28 8.14 -2.38 -0.02 2.26 16 27 C -0.15 -3.43 9.88 30.58 0.30 -3.12 16 28 C -0.12 -2.49 5.92 -10.81 -0.06 -2.55 16 29 H 0.09 2.33 7.67 -2.39 -0.02 2.31 16 30 C -0.12 -1.64 10.19 71.98 0.73 -0.91 16 31 H 0.06 1.26 7.22 -2.39 -0.02 1.25 16 32 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.07 2.10 8.07 -2.38 -0.02 2.08 16 35 H 0.10 2.07 6.44 -2.39 -0.02 2.06 16 36 H 0.02 1.06 8.07 -2.39 -0.02 1.04 16 37 H -0.01 -0.35 7.42 -2.39 -0.02 -0.36 16 38 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.13 2.37 6.98 -2.39 -0.02 2.35 16 40 H 0.08 1.68 7.38 -2.39 -0.02 1.66 16 41 H 0.05 2.03 5.88 -2.39 -0.01 2.01 16 42 H 0.06 1.85 6.40 -2.39 -0.02 1.83 16 43 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 44 H 0.11 1.19 7.93 -2.39 -0.02 1.17 16 45 H 0.07 0.91 8.12 -2.38 -0.02 0.89 16 46 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 49 H 0.41 7.51 8.60 -92.71 -0.80 6.71 16 50 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 51 H 0.12 2.28 8.05 -2.39 -0.02 2.26 16 52 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 53 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 54 H 0.07 0.84 7.90 -2.39 -0.02 0.82 16 Total: -1.00 -81.94 433.67 1.51 -80.43 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.07 Total: 23.40 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 7.28 Total: 16.09 kcal Atomic # 7 Polarization: -109.70 SS G_CDS: -7.78 Total: -117.48 kcal Atomic # 8 Polarization: -49.71 SS G_CDS: -0.09 Total: -49.80 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -81.94 1.51 -80.43 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001406650310.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.061 kcal (2) G-P(sol) polarization free energy of solvation -81.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds