Wall clock time and date at job start Sat Apr 11 2020 05:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46501 * 109.46922 * 2 1 4 4 C 1.36937 * 119.99692 * 264.93439 * 3 2 1 5 5 H 1.08008 * 119.99452 * 142.25451 * 4 3 2 6 6 C 1.38805 * 120.00476 * 322.24786 * 4 3 2 7 7 N 1.31623 * 119.99859 * 340.44564 * 6 4 3 8 8 Si 1.86800 * 120.00060 * 160.44213 * 6 4 3 9 9 H 1.48495 * 109.47228 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46793 * 120.00559 * 8 6 4 11 11 H 1.48501 * 109.47371 * 240.00186 * 8 6 4 12 12 C 1.46497 * 119.99780 * 84.93491 * 3 2 1 13 13 C 1.53002 * 109.46994 * 89.99894 * 12 3 2 14 14 N 1.46496 * 109.47286 * 179.97438 * 13 12 3 15 15 C 1.34770 * 120.00259 * 180.02562 * 14 13 12 16 16 O 1.21276 * 120.00188 * 0.02562 * 15 14 13 17 17 C 1.50705 * 120.00218 * 179.97438 * 15 14 13 18 18 H 1.08999 * 109.87203 * 301.01994 * 17 15 14 19 19 C 1.54331 * 109.88157 * 62.19229 * 17 15 14 20 20 C 1.55161 * 102.93859 * 97.22256 * 19 17 15 21 21 C 1.54908 * 101.58069 * 35.50449 * 20 19 17 22 22 N 1.47019 * 109.88224 * 179.97438 * 17 15 14 23 23 C 1.34780 * 125.64763 * 59.49133 * 22 17 15 24 24 O 1.21274 * 120.00018 * 356.49276 * 23 22 17 25 25 C 1.50702 * 119.99932 * 176.48609 * 23 22 17 26 26 C 1.52994 * 109.47198 * 189.55233 * 25 23 22 27 27 C 1.52997 * 109.47488 * 309.55919 * 25 23 22 28 28 C 1.53007 * 109.46759 * 69.55619 * 25 23 22 29 29 H 1.09002 * 109.46618 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47199 * 299.99698 * 1 2 3 31 31 H 1.08996 * 109.47122 * 60.00306 * 1 2 3 32 32 H 1.08999 * 109.46906 * 240.00273 * 2 1 3 33 33 H 1.09000 * 109.47117 * 120.00456 * 2 1 3 34 34 H 0.96999 * 119.99915 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.46965 * 209.99524 * 12 3 2 36 36 H 1.08993 * 109.47162 * 330.00075 * 12 3 2 37 37 H 1.09000 * 109.47345 * 300.00007 * 13 12 3 38 38 H 1.09004 * 109.46919 * 59.99622 * 13 12 3 39 39 H 0.97003 * 119.99967 * 0.02562 * 14 13 12 40 40 H 1.08992 * 110.71873 * 215.58755 * 19 17 15 41 41 H 1.09002 * 110.71850 * 338.86219 * 19 17 15 42 42 H 1.08994 * 111.00741 * 277.42656 * 20 19 17 43 43 H 1.09001 * 110.99878 * 153.57661 * 20 19 17 44 44 H 1.09007 * 110.36463 * 204.14473 * 21 20 19 45 45 H 1.08997 * 110.46184 * 81.87696 * 21 20 19 46 46 H 1.09010 * 109.46780 * 60.00805 * 26 25 23 47 47 H 1.09006 * 109.47417 * 179.97438 * 26 25 23 48 48 H 1.08998 * 109.47690 * 300.00666 * 26 25 23 49 49 H 1.09001 * 109.47192 * 59.99858 * 27 25 23 50 50 H 1.09001 * 109.47146 * 179.97438 * 27 25 23 51 51 H 1.08996 * 109.47132 * 300.00219 * 27 25 23 52 52 H 1.09008 * 109.46621 * 70.33591 * 28 25 23 53 53 H 1.08998 * 109.47261 * 190.33057 * 28 25 23 54 54 H 1.08992 * 109.47186 * 310.33999 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3453 1.9918 -1.1813 5 1 2.1191 3.0375 -1.3293 6 6 2.9674 1.2670 -2.1884 7 7 3.5852 0.1403 -1.9030 8 14 2.9277 1.8903 -3.9489 9 1 2.1760 3.1698 -4.0042 10 1 4.3161 2.1113 -4.4271 11 1 2.2599 0.8856 -4.8149 12 6 2.1569 2.1091 1.2638 13 6 3.5598 1.8836 1.8311 14 7 3.6986 2.6119 3.0945 15 6 4.8587 2.5597 3.7786 16 8 5.7879 1.9102 3.3480 17 6 5.0016 3.3095 5.0781 18 1 4.8307 4.3732 4.9128 19 6 3.9917 2.7666 6.1111 20 6 4.8437 1.7677 6.9381 21 6 6.2199 2.4785 6.9622 22 7 6.3473 3.0988 5.6315 23 6 7.5061 3.4193 5.0225 24 8 7.4951 3.8689 3.8962 25 6 8.8155 3.2191 5.7411 26 6 9.9426 3.8729 4.9392 27 6 8.7389 3.8593 7.1286 28 6 9.0944 1.7216 5.8851 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 4.0196 -0.3664 -2.6068 35 1 2.0027 3.1739 1.0886 36 1 1.4148 1.7467 1.9750 37 1 3.7141 0.8189 2.0062 38 1 4.3020 2.2460 1.1197 39 1 2.9556 3.1318 3.4388 40 1 3.6178 3.5710 6.7444 41 1 3.1697 2.2523 5.6133 42 1 4.9112 0.8026 6.4360 43 1 4.4445 1.6549 7.9460 44 1 7.0185 1.7537 7.1209 45 1 6.2411 3.2415 7.7403 46 1 9.7439 4.9398 4.8367 47 1 10.8896 3.7285 5.4592 48 1 9.9972 3.4169 3.9507 49 1 7.9360 3.3934 7.6999 50 1 9.6859 3.7141 7.6485 51 1 8.5402 4.9261 7.0261 52 1 9.3305 1.3004 4.9078 53 1 9.9384 1.5723 6.5585 54 1 8.2132 1.2253 6.2913 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691019708.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:06 Heat of formation + Delta-G solvation = -73.766536 kcal Electronic energy + Delta-G solvation = -31369.047212 eV Core-core repulsion = 27340.604858 eV Total energy + Delta-G solvation = -4028.442354 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.98986 -40.31268 -38.39348 -37.94377 -36.69259 -35.80351 -33.57085 -32.59328 -31.84008 -30.70630 -28.94535 -28.31579 -27.98085 -26.06941 -25.65371 -24.19507 -22.95804 -22.56395 -21.91471 -21.08089 -19.96906 -18.72270 -18.39642 -17.74820 -17.22926 -16.80206 -16.52689 -16.42890 -16.23804 -15.80192 -15.54340 -15.43623 -14.86061 -14.76719 -14.71264 -14.52635 -14.34640 -14.09916 -13.96307 -13.82187 -13.54224 -13.24151 -13.21944 -12.96419 -12.89477 -12.84422 -12.69596 -12.61377 -12.47135 -12.37647 -12.31898 -12.22716 -12.03090 -11.96593 -11.89074 -11.72443 -11.47572 -11.47087 -10.92371 -10.67060 -10.58984 -10.07494 -9.67301 -8.64304 -7.89331 -5.52375 1.40857 1.43274 1.53843 1.57588 1.66220 1.91701 2.29099 2.49182 3.20776 3.35971 3.55464 3.61299 3.66046 3.82771 3.87304 3.91967 4.05568 4.19545 4.22002 4.28339 4.33653 4.46809 4.54231 4.56494 4.64424 4.64905 4.71856 4.77698 4.84544 4.86276 4.90249 4.91895 4.93322 4.93928 5.04393 5.05113 5.05933 5.14506 5.17431 5.18069 5.21401 5.30242 5.34497 5.38866 5.47075 5.52726 5.63092 5.83339 6.42033 6.48605 6.62820 7.12014 7.20250 7.35534 7.79708 8.30929 9.08611 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014801 B = 0.002748 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.317227 B =10188.387681 C =11390.155573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.140 3.860 3 N -0.596 5.596 4 C -0.270 4.270 5 H 0.061 0.939 6 C -0.040 4.040 7 N -0.920 5.920 8 Si 0.960 3.040 9 H -0.263 1.263 10 H -0.297 1.297 11 H -0.284 1.284 12 C 0.147 3.853 13 C 0.127 3.873 14 N -0.711 5.711 15 C 0.490 3.510 16 O -0.580 6.580 17 C 0.116 3.884 18 H 0.106 0.894 19 C -0.113 4.113 20 C -0.132 4.132 21 C 0.083 3.917 22 N -0.604 5.604 23 C 0.527 3.473 24 O -0.584 6.584 25 C -0.079 4.079 26 C -0.126 4.126 27 C -0.146 4.146 28 C -0.141 4.141 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.058 0.942 33 H 0.020 0.980 34 H 0.250 0.750 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.027 0.973 38 H 0.010 0.990 39 H 0.415 0.585 40 H 0.129 0.871 41 H 0.089 0.911 42 H 0.052 0.948 43 H 0.130 0.870 44 H 0.092 0.908 45 H 0.113 0.887 46 H 0.050 0.950 47 H 0.093 0.907 48 H 0.029 0.971 49 H 0.090 0.910 50 H 0.090 0.910 51 H 0.055 0.945 52 H 0.031 0.969 53 H 0.101 0.899 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.449 6.081 29.039 29.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.014 3.986 3 N -0.317 5.317 4 C -0.400 4.400 5 H 0.078 0.922 6 C -0.238 4.238 7 N -0.564 5.564 8 Si 0.788 3.212 9 H -0.187 1.187 10 H -0.225 1.225 11 H -0.210 1.210 12 C 0.020 3.980 13 C 0.000 4.000 14 N -0.365 5.365 15 C 0.276 3.724 16 O -0.458 6.458 17 C 0.008 3.992 18 H 0.124 0.876 19 C -0.151 4.151 20 C -0.169 4.169 21 C -0.038 4.038 22 N -0.338 5.338 23 C 0.317 3.683 24 O -0.462 6.462 25 C -0.082 4.082 26 C -0.184 4.184 27 C -0.202 4.202 28 C -0.198 4.198 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.039 0.961 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.045 0.955 38 H 0.028 0.972 39 H 0.252 0.748 40 H 0.147 0.853 41 H 0.108 0.892 42 H 0.071 0.929 43 H 0.148 0.852 44 H 0.110 0.890 45 H 0.131 0.869 46 H 0.069 0.931 47 H 0.112 0.888 48 H 0.048 0.952 49 H 0.109 0.891 50 H 0.109 0.891 51 H 0.074 0.926 52 H 0.050 0.950 53 H 0.120 0.880 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.248 5.765 27.983 28.755 hybrid contribution 0.260 0.102 -2.085 2.104 sum 3.508 5.867 25.898 26.785 Atomic orbital electron populations 1.22098 0.97262 1.00448 1.00792 1.20840 0.92393 0.85538 0.99819 1.44062 1.73958 1.12284 1.01390 1.19353 1.32477 0.95896 0.92304 0.92173 1.25992 0.96223 0.98356 1.03188 1.70159 1.35647 1.18076 1.32498 0.85331 0.76868 0.78422 0.80567 1.18671 1.22453 1.20982 1.21155 0.91708 0.96999 0.88173 1.21766 1.00682 0.94054 0.83513 1.45874 1.15557 1.51845 1.23223 1.21809 0.81922 0.81387 0.87325 1.90697 1.40547 1.44078 1.70482 1.21759 0.85963 1.00078 0.91413 0.87633 1.22788 0.95615 1.00883 0.95781 1.22897 0.93841 0.97361 1.02846 1.23118 0.99412 0.98036 0.83190 1.48360 1.03668 1.61994 1.19741 1.21127 0.85845 0.76023 0.85270 1.90702 1.87553 1.47211 1.20780 1.20813 0.90408 0.98898 0.98060 1.21674 0.97795 0.99985 0.98934 1.22167 1.05288 1.00490 0.92283 1.21982 1.03703 0.92069 1.02051 0.92326 0.92641 0.94483 0.92438 0.96139 0.94054 0.92463 0.90610 0.95473 0.97151 0.74763 0.85269 0.89241 0.92907 0.85223 0.88960 0.86913 0.93122 0.88848 0.95162 0.89127 0.89076 0.92605 0.95013 0.88018 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.60 10.24 71.99 0.74 -4.87 16 2 C 0.14 6.71 5.95 86.38 0.51 7.22 16 3 N -0.60 -30.08 2.43 -701.99 -1.70 -31.78 16 4 C -0.27 -15.20 9.47 84.03 0.80 -14.41 16 5 H 0.06 3.35 7.90 -2.91 -0.02 3.33 16 6 C -0.04 -2.33 4.95 84.86 0.42 -1.91 16 7 N -0.92 -56.84 11.44 21.65 0.25 -56.59 16 8 Si 0.96 46.61 29.60 68.60 2.03 48.64 16 9 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 10 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 11 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 12 C 0.15 5.99 5.80 86.38 0.50 6.49 16 13 C 0.13 5.67 6.00 86.38 0.52 6.19 16 14 N -0.71 -23.82 5.24 -463.07 -2.43 -26.25 16 15 C 0.49 17.90 6.69 87.66 0.59 18.48 16 16 O -0.58 -28.63 14.74 14.76 0.22 -28.42 16 17 C 0.12 2.77 3.32 44.60 0.15 2.92 16 18 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 19 C -0.11 -1.38 6.45 31.79 0.21 -1.17 16 20 C -0.13 -1.43 7.09 31.99 0.23 -1.20 16 21 C 0.08 1.03 4.81 86.86 0.42 1.45 16 22 N -0.60 -14.58 2.85 -792.30 -2.26 -16.83 16 23 C 0.53 16.50 5.80 87.66 0.51 17.01 16 24 O -0.58 -25.66 14.86 14.76 0.22 -25.44 16 25 C -0.08 -1.69 0.75 -52.93 -0.04 -1.73 16 26 C -0.13 -2.94 7.80 71.98 0.56 -2.38 16 27 C -0.15 -1.71 8.14 71.98 0.59 -1.13 16 28 C -0.14 -2.72 8.33 71.98 0.60 -2.12 16 29 H 0.06 1.94 8.14 -2.39 -0.02 1.93 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.06 3.22 5.53 -2.39 -0.01 3.21 16 33 H 0.02 0.95 8.11 -2.39 -0.02 0.93 16 34 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 35 H 0.06 2.23 8.04 -2.39 -0.02 2.21 16 36 H 0.08 2.54 8.07 -2.39 -0.02 2.52 16 37 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.42 9.77 8.35 -92.71 -0.77 9.00 16 40 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.09 1.14 7.48 -2.39 -0.02 1.13 16 42 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 43 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.09 1.06 4.60 -2.38 -0.01 1.05 16 45 H 0.11 0.62 6.92 -2.39 -0.02 0.61 16 46 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 47 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 48 H 0.03 0.89 7.99 -2.39 -0.02 0.88 16 49 H 0.09 0.70 4.13 -2.39 -0.01 0.69 16 50 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 52 H 0.03 0.81 8.11 -2.38 -0.02 0.79 16 53 H 0.10 1.22 8.11 -2.39 -0.02 1.20 16 54 H 0.07 1.26 5.14 -2.39 -0.01 1.25 16 Total: -1.00 -91.36 416.68 3.72 -87.64 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.10 Total: 20.18 kcal Atomic # 6 Polarization: 21.56 SS G_CDS: 7.29 Total: 28.85 kcal Atomic # 7 Polarization: -125.31 SS G_CDS: -6.14 Total: -131.45 kcal Atomic # 8 Polarization: -54.29 SS G_CDS: 0.44 Total: -53.86 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -91.36 3.72 -87.64 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691019708.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.872 kcal (2) G-P(sol) polarization free energy of solvation -91.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds