Wall clock time and date at job start Sat Apr 11 2020 05:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47496 * 2 1 4 4 C 1.46495 * 120.00014 * 274.50769 * 3 2 1 5 5 C 1.52999 * 109.47284 * 269.99729 * 4 3 2 6 6 N 1.46896 * 109.47425 * 180.02562 * 5 4 3 7 7 C 1.46901 * 111.00164 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46860 * 180.02562 * 7 6 5 9 9 O 1.21288 * 120.00463 * 0.02562 * 8 7 6 10 10 N 1.34785 * 119.99587 * 180.02562 * 8 7 6 11 11 C 1.37095 * 120.00007 * 180.02562 * 10 8 7 12 12 H 1.08007 * 119.99929 * 359.97438 * 11 10 8 13 13 C 1.38943 * 120.00093 * 179.97438 * 11 10 8 14 14 N 1.31410 * 120.00134 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 119.99921 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47105 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47024 * 119.99976 * 15 13 11 18 18 H 1.48501 * 109.47099 * 239.99919 * 15 13 11 19 19 C 1.34783 * 119.99649 * 94.50925 * 3 2 1 20 20 O 1.21278 * 119.99691 * 185.77046 * 19 3 2 21 21 C 1.50699 * 120.00263 * 5.76926 * 19 3 2 22 22 C 1.52999 * 109.47015 * 63.18563 * 21 19 3 23 23 C 1.53000 * 109.47065 * 303.18904 * 21 19 3 24 24 C 1.52996 * 109.47435 * 183.18617 * 21 19 3 25 25 C 1.53780 * 113.61518 * 184.75967 * 24 21 19 26 26 C 1.53782 * 87.07859 * 139.98317 * 25 24 21 27 27 C 1.53777 * 113.61130 * 282.25954 * 24 21 19 28 28 H 1.09001 * 109.46834 * 303.68128 * 1 2 3 29 29 H 1.09004 * 109.47126 * 63.67234 * 1 2 3 30 30 H 1.08990 * 109.47397 * 183.67955 * 1 2 3 31 31 H 1.09006 * 109.46688 * 239.99832 * 2 1 3 32 32 H 1.08995 * 109.47362 * 120.00631 * 2 1 3 33 33 H 1.09000 * 109.47441 * 30.00208 * 4 3 2 34 34 H 1.09003 * 109.46895 * 150.00078 * 4 3 2 35 35 H 1.09000 * 109.47273 * 300.00582 * 5 4 3 36 36 H 1.09003 * 109.46869 * 60.00334 * 5 4 3 37 37 H 1.00906 * 110.99702 * 56.04713 * 6 5 4 38 38 H 1.08991 * 109.47486 * 300.00650 * 7 6 5 39 39 H 1.09002 * 109.46957 * 60.00593 * 7 6 5 40 40 H 0.96992 * 119.99859 * 359.97438 * 10 8 7 41 41 H 0.96999 * 119.99652 * 179.97438 * 14 13 11 42 42 H 1.08998 * 109.47232 * 185.19524 * 22 21 19 43 43 H 1.09003 * 109.47316 * 305.18856 * 22 21 19 44 44 H 1.09003 * 109.47309 * 65.18613 * 22 21 19 45 45 H 1.09000 * 109.46963 * 314.28543 * 23 21 19 46 46 H 1.09001 * 109.47690 * 74.28745 * 23 21 19 47 47 H 1.09006 * 109.47293 * 194.28935 * 23 21 19 48 48 H 1.09005 * 112.90221 * 53.50700 * 24 21 19 49 49 H 1.08996 * 113.61312 * 25.43199 * 25 24 21 50 50 H 1.08997 * 113.68851 * 254.54088 * 25 24 21 51 51 H 1.08995 * 113.61765 * 89.11421 * 26 25 24 52 52 H 1.09006 * 113.61168 * 220.01836 * 26 25 24 53 53 H 1.09000 * 113.61583 * 105.47188 * 27 24 21 54 54 H 1.08999 * 113.61784 * 334.56203 * 27 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1686 2.1050 -1.2648 5 6 3.5767 1.8776 -1.8184 6 7 3.7275 2.6039 -3.0863 7 6 5.0707 2.4087 -3.6483 8 6 5.1877 3.1675 -4.9451 9 8 4.2452 3.8081 -5.3601 10 7 6.3399 3.1341 -5.6437 11 6 6.4466 3.8247 -6.8232 12 1 5.6073 4.3952 -7.1928 13 6 7.6345 3.7907 -7.5432 14 7 8.6559 3.0970 -7.0933 15 14 7.7796 4.7312 -9.1507 16 1 6.4989 5.4274 -9.4342 17 1 8.8724 5.7308 -9.0424 18 1 8.0831 3.7835 -10.2530 19 6 2.3296 1.9859 1.1637 20 8 2.6334 3.1599 1.1746 21 6 2.3001 1.2031 2.4511 22 6 3.3457 0.0876 2.3938 23 6 0.9113 0.5909 2.6440 24 6 2.6133 2.1361 3.6226 25 6 2.7226 1.4118 4.9747 26 6 3.9099 2.3383 5.2859 27 6 4.1089 2.4636 3.7662 28 1 -0.3633 0.5699 0.8552 29 1 -0.3633 0.4558 -0.9211 30 1 -0.3633 -1.0254 0.0659 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.4330 1.7403 -1.9817 34 1 2.0129 3.1703 -1.0944 35 1 4.3123 2.2422 -1.1015 36 1 3.7324 0.8123 -1.9888 37 1 3.5248 3.5852 -2.9673 38 1 5.8164 2.7769 -2.9438 39 1 5.2371 1.3472 -3.8317 40 1 7.0937 2.6220 -5.3116 41 1 9.4850 3.0730 -7.5961 42 1 3.2621 -0.5348 3.2847 43 1 3.1772 -0.5231 1.5068 44 1 4.3427 0.5260 2.3490 45 1 0.1504 1.3424 2.4333 46 1 0.7878 -0.2517 1.9636 47 1 0.8060 0.2457 3.6726 48 1 1.9693 3.0151 3.6487 49 1 2.9998 0.3614 4.8862 50 1 1.8633 1.5693 5.6265 51 1 3.6204 3.2725 5.7669 52 1 4.7335 1.8367 5.7943 53 1 4.3684 3.4713 3.4415 54 1 4.7652 1.7007 3.3474 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754058708.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:12 Heat of formation + Delta-G solvation = -55.346856 kcal Electronic energy + Delta-G solvation = -30429.240132 eV Core-core repulsion = 26401.596516 eV Total energy + Delta-G solvation = -4027.643616 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.07808 -40.21724 -39.59130 -37.61347 -36.88102 -35.91860 -34.74933 -33.30334 -32.05101 -30.25436 -28.51032 -27.75235 -26.67943 -26.19529 -25.78198 -24.42398 -23.80397 -22.43543 -21.18457 -20.22101 -19.90104 -19.37714 -17.93860 -17.70653 -17.64436 -17.04848 -16.61600 -16.53431 -16.26621 -15.98149 -15.70003 -15.47561 -15.25695 -15.01971 -14.94602 -14.50654 -14.35490 -13.89304 -13.79253 -13.67180 -13.52833 -13.47199 -13.32846 -13.17044 -12.97116 -12.88124 -12.71656 -12.50195 -12.44093 -12.42181 -12.22554 -12.12536 -12.07450 -11.87488 -11.54126 -11.44541 -11.25967 -11.22789 -10.88679 -10.48973 -10.41240 -10.04661 -9.71461 -9.47014 -8.49071 -5.98149 1.35257 1.40615 1.55198 1.63378 1.92041 2.00722 2.28288 2.94183 3.17592 3.34226 3.51814 3.66928 3.69228 3.87627 3.96914 3.99866 4.05567 4.07321 4.11693 4.25260 4.28436 4.34218 4.39447 4.44384 4.46194 4.53972 4.55551 4.68413 4.72563 4.77147 4.82693 4.84700 4.89727 4.93861 4.97131 4.97947 5.01528 5.07211 5.13597 5.17793 5.29617 5.32715 5.38946 5.42259 5.50581 5.55094 5.67152 5.80974 6.03194 6.23132 6.44086 6.56737 7.09597 7.20107 7.52091 8.07273 8.68606 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018656 B = 0.001948 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.512185 B =14367.937935 C =15209.910973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.075 3.925 3 N -0.604 5.604 4 C 0.122 3.878 5 C 0.058 3.942 6 N -0.676 5.676 7 C 0.067 3.933 8 C 0.437 3.563 9 O -0.623 6.623 10 N -0.572 5.572 11 C -0.334 4.334 12 H 0.079 0.921 13 C -0.014 4.014 14 N -0.920 5.920 15 Si 0.995 3.005 16 H -0.274 1.274 17 H -0.271 1.271 18 H -0.269 1.269 19 C 0.515 3.485 20 O -0.585 6.585 21 C -0.065 4.065 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.089 4.089 25 C -0.120 4.120 26 C -0.141 4.141 27 C -0.148 4.148 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.123 0.877 33 H 0.096 0.904 34 H 0.057 0.943 35 H 0.017 0.983 36 H 0.089 0.911 37 H 0.342 0.658 38 H 0.060 0.940 39 H 0.110 0.890 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.097 0.903 43 H 0.083 0.917 44 H 0.056 0.944 45 H 0.048 0.952 46 H 0.099 0.901 47 H 0.085 0.915 48 H 0.067 0.933 49 H 0.104 0.896 50 H 0.075 0.925 51 H 0.073 0.927 52 H 0.078 0.922 53 H 0.036 0.964 54 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.858 -14.302 26.624 32.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.046 4.046 3 N -0.336 5.336 4 C -0.002 4.002 5 C -0.072 4.072 6 N -0.308 5.308 7 C -0.066 4.066 8 C 0.225 3.775 9 O -0.509 6.509 10 N -0.209 5.209 11 C -0.464 4.464 12 H 0.097 0.903 13 C -0.214 4.214 14 N -0.561 5.561 15 Si 0.818 3.182 16 H -0.198 1.198 17 H -0.196 1.196 18 H -0.194 1.194 19 C 0.304 3.696 20 O -0.464 6.464 21 C -0.068 4.068 22 C -0.215 4.215 23 C -0.214 4.214 24 C -0.108 4.108 25 C -0.157 4.157 26 C -0.178 4.178 27 C -0.185 4.185 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.141 0.859 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.036 0.964 36 H 0.108 0.892 37 H 0.160 0.840 38 H 0.077 0.923 39 H 0.128 0.872 40 H 0.231 0.769 41 H 0.088 0.912 42 H 0.116 0.884 43 H 0.101 0.899 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.118 0.882 47 H 0.104 0.896 48 H 0.086 0.914 49 H 0.122 0.878 50 H 0.094 0.906 51 H 0.092 0.908 52 H 0.096 0.904 53 H 0.055 0.945 54 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.427 -13.809 25.893 32.271 hybrid contribution 1.238 1.519 -0.490 2.020 sum -12.189 -12.290 25.403 30.740 Atomic orbital electron populations 1.22532 0.94993 1.03929 1.02567 1.22529 0.95423 0.80892 1.05757 1.47987 1.64979 1.15537 1.05058 1.21171 0.96479 0.97320 0.85220 1.22238 0.96790 0.99724 0.88433 1.60059 1.26526 1.17121 1.27068 1.21525 0.90925 1.01375 0.92751 1.20802 0.83048 0.85558 0.88114 1.90489 1.39763 1.48127 1.72547 1.41927 1.13044 1.45118 1.20814 1.19713 0.99725 1.27718 0.99221 0.90320 1.26078 0.94274 0.98182 1.02832 1.69679 1.03968 1.41432 1.40986 0.84845 0.78230 0.77981 0.77105 1.19829 1.19582 1.19383 1.21397 0.74897 0.87044 0.86221 1.90677 1.49771 1.18554 1.87433 1.20695 0.99588 0.96178 0.90327 1.22343 0.97385 0.96972 1.04772 1.22564 0.92404 1.01422 1.04961 1.22317 0.96750 0.97610 0.94075 1.22992 0.98422 0.99723 0.94591 1.22792 0.99441 1.00282 0.95281 1.23118 0.97016 1.00915 0.97459 0.91475 0.93520 0.88918 0.89389 0.85940 0.88615 0.92420 0.96424 0.89234 0.84030 0.92253 0.87210 0.76932 0.91226 0.88424 0.89876 0.92541 0.93345 0.88238 0.89604 0.91442 0.87803 0.90614 0.90815 0.90361 0.94474 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 8.97 71.98 0.65 -1.07 16 2 C 0.07 0.81 5.07 86.38 0.44 1.25 16 3 N -0.60 -11.61 2.47 -821.82 -2.03 -13.64 16 4 C 0.12 2.95 5.73 86.38 0.50 3.45 16 5 C 0.06 1.54 6.01 86.30 0.52 2.05 16 6 N -0.68 -23.04 6.13 -517.95 -3.17 -26.22 16 7 C 0.07 2.43 6.17 85.56 0.53 2.96 16 8 C 0.44 21.68 7.82 87.66 0.69 22.37 16 9 O -0.62 -35.84 15.78 -3.05 -0.05 -35.88 16 10 N -0.57 -30.24 5.29 -306.98 -1.62 -31.86 16 11 C -0.33 -19.44 9.68 84.04 0.81 -18.63 16 12 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 13 C -0.01 -0.76 5.50 84.92 0.47 -0.29 16 14 N -0.92 -50.32 13.05 21.66 0.28 -50.03 16 15 Si 0.99 43.64 29.55 68.60 2.03 45.67 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 17 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 18 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 19 C 0.51 11.81 6.37 87.66 0.56 12.36 16 20 O -0.58 -19.35 15.28 -3.02 -0.05 -19.39 16 21 C -0.06 -0.94 0.40 -52.93 -0.02 -0.96 16 22 C -0.16 -1.57 7.38 71.98 0.53 -1.04 16 23 C -0.16 -1.44 6.72 71.98 0.48 -0.95 16 24 C -0.09 -1.49 2.43 -10.27 -0.02 -1.51 16 25 C -0.12 -1.25 6.49 31.12 0.20 -1.04 16 26 C -0.14 -1.88 8.08 31.12 0.25 -1.63 16 27 C -0.15 -2.75 7.02 31.12 0.22 -2.54 16 28 H 0.07 0.69 5.16 -2.39 -0.01 0.67 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.09 0.86 8.11 -2.38 -0.02 0.84 16 32 H 0.12 0.81 2.61 -2.39 -0.01 0.81 16 33 H 0.10 2.13 8.07 -2.39 -0.02 2.11 16 34 H 0.06 1.71 7.35 -2.39 -0.02 1.69 16 35 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.34 12.73 8.43 -89.69 -0.76 11.98 16 38 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 40 H 0.40 19.85 7.90 -92.71 -0.73 19.12 16 41 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 42 H 0.10 0.49 6.49 -2.39 -0.02 0.47 16 43 H 0.08 0.63 5.08 -2.39 -0.01 0.62 16 44 H 0.06 0.75 5.71 -2.39 -0.01 0.74 16 45 H 0.05 0.59 7.05 -2.39 -0.02 0.58 16 46 H 0.10 0.55 3.67 -2.39 -0.01 0.54 16 47 H 0.09 0.50 7.22 -2.38 -0.02 0.48 16 48 H 0.07 1.47 8.05 -2.38 -0.02 1.45 16 49 H 0.10 0.68 6.23 -2.39 -0.01 0.67 16 50 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 52 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 53 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 54 H 0.09 1.55 5.47 -2.39 -0.01 1.54 16 Total: -1.00 -75.92 408.21 1.62 -74.30 By element: Atomic # 1 Polarization: 42.84 SS G_CDS: -0.56 Total: 42.28 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 6.79 Total: 14.78 kcal Atomic # 7 Polarization: -115.21 SS G_CDS: -6.54 Total: -121.75 kcal Atomic # 8 Polarization: -55.18 SS G_CDS: -0.09 Total: -55.28 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -75.92 1.62 -74.30 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754058708.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.957 kcal (2) G-P(sol) polarization free energy of solvation -75.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds