Wall clock time and date at job start Sat Apr 11 2020 05:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42904 * 114.00507 * 2 1 4 4 C 1.53000 * 109.47697 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46800 * 64.99953 * 4 3 2 6 6 C 1.34773 * 120.00058 * 270.00077 * 5 4 3 7 7 O 1.21586 * 119.99824 * 4.72179 * 6 5 4 8 8 N 1.34780 * 119.99924 * 184.72135 * 6 5 4 9 9 C 1.46497 * 119.99890 * 184.70908 * 8 6 5 10 10 C 1.53040 * 109.46127 * 275.03006 * 9 8 6 11 11 C 1.53201 * 109.31166 * 178.60203 * 10 9 8 12 12 N 1.46927 * 108.76283 * 54.65322 * 11 10 9 13 13 C 1.36943 * 120.62736 * 126.36231 * 12 11 10 14 14 H 1.07997 * 120.00069 * 207.63128 * 13 12 11 15 15 C 1.38815 * 119.99884 * 27.63168 * 13 12 11 16 16 N 1.31615 * 120.00101 * 26.97363 * 15 13 12 17 17 Si 1.86800 * 119.99970 * 206.96759 * 15 13 12 18 18 H 1.48502 * 109.46633 * 94.99425 * 17 15 13 19 19 H 1.48489 * 109.47208 * 214.99396 * 17 15 13 20 20 H 1.48501 * 109.46971 * 335.00126 * 17 15 13 21 21 C 1.46923 * 118.74109 * 306.38215 * 12 11 10 22 22 C 1.53039 * 109.45778 * 154.97589 * 9 8 6 23 23 C 1.46498 * 119.99668 * 90.00356 * 5 4 3 24 24 C 1.54269 * 110.03208 * 231.28977 * 23 5 4 25 25 C 1.54963 * 104.16201 * 217.13900 * 24 23 5 26 26 C 1.54891 * 102.77828 * 37.88721 * 25 24 23 27 27 C 1.53876 * 110.03156 * 114.07514 * 23 5 4 28 28 H 1.08999 * 109.47407 * 300.00289 * 1 2 3 29 29 H 1.09005 * 109.46878 * 59.99919 * 1 2 3 30 30 H 1.08996 * 109.47339 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46518 * 59.99925 * 3 2 1 32 32 H 1.09001 * 109.46900 * 300.00430 * 3 2 1 33 33 H 1.09000 * 109.46930 * 305.00219 * 4 3 2 34 34 H 1.08998 * 109.47260 * 185.00262 * 4 3 2 35 35 H 0.97000 * 119.99972 * 4.71998 * 8 6 5 36 36 H 1.09007 * 109.46115 * 35.00204 * 9 8 6 37 37 H 1.09001 * 109.49601 * 298.56366 * 10 9 8 38 38 H 1.09001 * 109.49950 * 58.66870 * 10 9 8 39 39 H 1.08995 * 109.59594 * 294.86704 * 11 10 9 40 40 H 1.08997 * 109.70010 * 174.50265 * 11 10 9 41 41 H 0.96998 * 120.00427 * 179.97438 * 16 15 13 42 42 H 1.08992 * 109.58799 * 293.82491 * 21 12 11 43 43 H 1.09002 * 109.70134 * 173.46489 * 21 12 11 44 44 H 1.09005 * 109.49957 * 301.33332 * 22 9 8 45 45 H 1.08998 * 109.49691 * 61.40171 * 22 9 8 46 46 H 1.08994 * 110.02070 * 352.68278 * 23 5 4 47 47 H 1.09004 * 110.48396 * 335.78497 * 24 23 5 48 48 H 1.09003 * 110.48479 * 98.42384 * 24 23 5 49 49 H 1.09000 * 110.71901 * 279.57049 * 25 24 23 50 50 H 1.08997 * 110.92505 * 156.29500 * 25 24 23 51 51 H 1.08995 * 110.48625 * 203.40852 * 26 25 24 52 52 H 1.08995 * 110.59630 * 80.81710 * 26 25 24 53 53 H 1.08997 * 110.03099 * 238.56970 * 27 23 5 54 54 H 1.09002 * 110.03354 * 359.97438 * 27 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0959 -0.7760 -1.3332 7 8 3.7559 -1.4751 -0.3983 8 7 4.5919 -1.3410 -2.4518 9 6 4.6258 -2.7997 -2.5825 10 6 5.8951 -3.3416 -1.9211 11 6 5.9098 -4.8697 -2.0290 12 7 5.7581 -5.2452 -3.4414 13 6 6.6606 -6.0823 -4.0416 14 1 6.8335 -6.0164 -5.1056 15 6 7.3532 -7.0154 -3.2823 16 7 6.8257 -7.4808 -2.1699 17 14 9.0339 -7.6108 -3.8394 18 1 10.0897 -6.8084 -3.1711 19 1 9.1967 -9.0419 -3.4785 20 1 9.1512 -7.4549 -5.3116 21 6 4.6201 -4.7052 -4.1977 22 6 4.6197 -3.1790 -4.0651 23 6 4.2883 1.3998 -2.4130 24 6 3.5292 0.8847 -3.6532 25 6 4.5273 1.0894 -4.8208 26 6 5.8891 0.7347 -4.1734 27 6 5.7881 1.3049 -2.7435 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6886 1.8463 0.8901 32 1 1.6886 1.8464 -0.8900 33 1 3.8508 0.5685 0.8427 34 1 3.9785 2.1765 0.0903 35 1 4.9266 -0.7818 -3.1702 36 1 3.7505 -3.2285 -2.0943 37 1 6.7708 -2.9326 -2.4250 38 1 5.9103 -3.0512 -0.8706 39 1 5.0852 -5.2851 -1.4499 40 1 6.8551 -5.2559 -1.6477 41 1 7.3095 -8.1331 -1.6395 42 1 3.6903 -5.1072 -3.7954 43 1 4.7131 -4.9807 -5.2482 44 1 3.7270 -2.7729 -4.5409 45 1 5.5073 -2.7711 -4.5486 46 1 4.0152 2.4356 -2.2116 47 1 3.2861 -0.1718 -3.5401 48 1 2.6242 1.4700 -3.8169 49 1 4.5184 2.1256 -5.1586 50 1 4.3045 0.4136 -5.6464 51 1 6.7053 1.2103 -4.7170 52 1 6.0299 -0.3457 -4.1442 53 1 6.2427 2.2947 -2.7033 54 1 6.2842 0.6372 -2.0391 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610529607.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:11 Heat of formation + Delta-G solvation = -59.045081 kcal Electronic energy + Delta-G solvation = -32550.203936 eV Core-core repulsion = 28522.399952 eV Total energy + Delta-G solvation = -4027.803983 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.98381 -39.42012 -38.76025 -38.46046 -36.19383 -35.14995 -33.81131 -31.85952 -31.52464 -30.51390 -29.67276 -28.25374 -27.27902 -26.67425 -24.33851 -23.97530 -23.11211 -22.24676 -21.95059 -20.99332 -20.29152 -18.82679 -18.19842 -18.05331 -17.19681 -16.91269 -16.67157 -16.50268 -16.20147 -15.91962 -15.70396 -15.54774 -15.41805 -15.25183 -14.80199 -14.46376 -14.38319 -14.23334 -13.98599 -13.49480 -13.44155 -13.18062 -13.13381 -13.00761 -12.62463 -12.60272 -12.53395 -12.26868 -12.14002 -12.07408 -12.04342 -11.98357 -11.94864 -11.91051 -11.75037 -11.53723 -11.40191 -11.37789 -10.92603 -10.53782 -10.51400 -9.92134 -9.39946 -8.77013 -7.91021 -5.30518 1.46513 1.49192 1.58607 1.75688 2.31655 2.51824 2.93658 3.09357 3.22598 3.60642 3.63843 3.65608 3.85800 3.94633 4.06692 4.18406 4.24714 4.30877 4.36639 4.42770 4.43370 4.45584 4.49357 4.50164 4.55059 4.57861 4.62737 4.63441 4.70110 4.77748 4.81480 4.83831 4.95524 4.97826 5.00836 5.03692 5.04569 5.12411 5.13252 5.22029 5.26691 5.31727 5.35573 5.42574 5.57734 5.68433 5.72350 5.77324 6.06940 6.35281 6.41157 7.09860 7.14446 7.79202 7.82413 8.37928 9.16326 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014412 B = 0.003284 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.417294 B = 8524.896929 C = 9460.875206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.406 6.406 3 C 0.041 3.959 4 C 0.128 3.872 5 N -0.619 5.619 6 C 0.699 3.301 7 O -0.620 6.620 8 N -0.738 5.738 9 C 0.178 3.822 10 C -0.126 4.126 11 C 0.187 3.813 12 N -0.605 5.605 13 C -0.270 4.270 14 H 0.074 0.926 15 C -0.047 4.047 16 N -0.929 5.929 17 Si 0.961 3.039 18 H -0.288 1.288 19 H -0.297 1.297 20 H -0.262 1.262 21 C 0.144 3.856 22 C -0.120 4.120 23 C 0.132 3.868 24 C -0.159 4.159 25 C -0.116 4.116 26 C -0.142 4.142 27 C -0.146 4.146 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.133 0.867 35 H 0.412 0.588 36 H 0.049 0.951 37 H 0.058 0.942 38 H 0.042 0.958 39 H -0.010 1.010 40 H 0.044 0.956 41 H 0.250 0.750 42 H 0.010 0.990 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.129 0.871 47 H 0.059 0.941 48 H 0.087 0.913 49 H 0.097 0.903 50 H 0.072 0.928 51 H 0.092 0.908 52 H 0.048 0.952 53 H 0.103 0.897 54 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.270 28.576 -3.116 29.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.325 6.325 3 C -0.037 4.037 4 C 0.005 3.995 5 N -0.356 5.356 6 C 0.401 3.599 7 O -0.500 6.500 8 N -0.401 5.401 9 C 0.072 3.928 10 C -0.167 4.167 11 C 0.060 3.940 12 N -0.329 5.329 13 C -0.399 4.399 14 H 0.091 0.909 15 C -0.243 4.243 16 N -0.574 5.574 17 Si 0.789 3.211 18 H -0.215 1.215 19 H -0.224 1.224 20 H -0.186 1.186 21 C 0.018 3.982 22 C -0.159 4.159 23 C 0.029 3.971 24 C -0.198 4.198 25 C -0.154 4.154 26 C -0.180 4.180 27 C -0.185 4.185 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.150 0.850 35 H 0.257 0.743 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.008 0.992 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.028 0.972 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.090 0.910 46 H 0.147 0.853 47 H 0.077 0.923 48 H 0.106 0.894 49 H 0.116 0.884 50 H 0.091 0.909 51 H 0.111 0.889 52 H 0.067 0.933 53 H 0.121 0.879 54 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.373 27.808 -2.365 29.138 hybrid contribution 0.674 -0.831 0.213 1.091 sum -7.699 26.977 -2.152 28.137 Atomic orbital electron populations 1.22781 0.80837 1.02480 1.00614 1.88172 1.20190 1.28750 1.95433 1.23172 0.94277 0.84783 1.01459 1.21603 0.92741 0.99577 0.85530 1.47320 1.70869 1.03252 1.14140 1.16129 0.78149 0.82797 0.82836 1.90905 1.57206 1.62310 1.39569 1.46165 1.66817 1.07183 1.19970 1.20447 0.96589 0.79217 0.96577 1.22270 0.98106 0.97251 0.99067 1.20370 0.98024 0.90536 0.85059 1.44344 1.27162 1.53326 1.08034 1.19514 1.15392 1.10982 0.94061 0.90857 1.25782 1.03279 0.96731 0.98539 1.70320 1.37202 1.31055 1.18841 0.85347 0.80717 0.76376 0.78651 1.21515 1.22401 1.18565 1.21012 0.89126 0.91792 0.96305 1.22125 1.02639 0.97435 0.93719 1.22125 0.94280 0.96246 0.84470 1.23128 0.99808 1.02063 0.94775 1.22512 0.92616 1.03533 0.96743 1.22556 0.99693 0.99728 0.95986 1.22775 0.95909 1.03143 0.96677 0.92801 0.93307 0.90983 0.90781 0.91963 0.92200 0.84958 0.74258 0.93286 0.92364 0.93922 0.99228 0.93713 0.94131 0.97193 0.91130 0.89575 0.90973 0.85272 0.92259 0.89391 0.88422 0.90889 0.88902 0.93321 0.87851 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 11.01 113.37 1.25 1.85 16 2 O -0.41 -11.43 9.29 -136.81 -1.27 -12.70 16 3 C 0.04 0.74 6.28 71.98 0.45 1.19 16 4 C 0.13 2.50 5.81 86.38 0.50 3.00 16 5 N -0.62 -14.48 2.38 -811.68 -1.93 -16.42 16 6 C 0.70 23.86 6.85 179.05 1.23 25.09 16 7 O -0.62 -27.61 14.61 8.19 0.12 -27.49 16 8 N -0.74 -23.48 3.38 -457.68 -1.55 -25.03 16 9 C 0.18 6.85 2.38 45.02 0.11 6.96 16 10 C -0.13 -5.59 5.65 30.67 0.17 -5.41 16 11 C 0.19 9.95 5.41 86.37 0.47 10.41 16 12 N -0.61 -31.75 2.99 -699.09 -2.09 -33.84 16 13 C -0.27 -15.18 9.51 84.03 0.80 -14.38 16 14 H 0.07 3.95 7.96 -2.91 -0.02 3.92 16 15 C -0.05 -2.70 4.62 84.86 0.39 -2.31 16 16 N -0.93 -57.80 11.86 21.65 0.26 -57.54 16 17 Si 0.96 45.76 29.63 68.60 2.03 47.79 16 18 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 19 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 20 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 21 C 0.14 6.12 6.51 86.36 0.56 6.69 16 22 C -0.12 -4.09 5.55 30.67 0.17 -3.92 16 23 C 0.13 1.98 3.33 45.72 0.15 2.13 16 24 C -0.16 -2.47 5.86 31.70 0.19 -2.28 16 25 C -0.12 -1.39 6.84 31.91 0.22 -1.17 16 26 C -0.14 -2.11 6.13 31.67 0.19 -1.92 16 27 C -0.15 -2.20 5.75 31.32 0.18 -2.02 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 1.57 7.49 -2.39 -0.02 1.56 16 34 H 0.13 1.31 8.00 -2.39 -0.02 1.29 16 35 H 0.41 10.63 1.77 -92.71 -0.16 10.47 16 36 H 0.05 2.21 7.65 -2.38 -0.02 2.19 16 37 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.04 1.96 8.10 -2.39 -0.02 1.94 16 39 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 40 H 0.04 2.63 6.35 -2.39 -0.02 2.61 16 41 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 42 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.07 2.81 7.94 -2.39 -0.02 2.79 16 44 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 45 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 46 H 0.13 1.04 7.90 -2.39 -0.02 1.02 16 47 H 0.06 1.34 5.40 -2.39 -0.01 1.33 16 48 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 51 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 52 H 0.05 0.99 6.31 -2.39 -0.02 0.97 16 53 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 54 H 0.05 1.01 7.43 -2.39 -0.02 0.99 16 Total: -1.00 -79.94 405.68 3.30 -76.64 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.70 Total: 24.68 kcal Atomic # 6 Polarization: 16.86 SS G_CDS: 7.03 Total: 23.90 kcal Atomic # 7 Polarization: -127.51 SS G_CDS: -5.31 Total: -132.82 kcal Atomic # 8 Polarization: -39.04 SS G_CDS: -1.15 Total: -40.19 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -79.94 3.30 -76.64 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610529607.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.594 kcal (2) G-P(sol) polarization free energy of solvation -79.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds