Wall clock time and date at job start Sat Apr 11 2020 05:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46838 * 111.00272 * 2 1 4 4 C 1.53034 * 109.52422 * 185.84349 * 3 2 1 5 5 C 1.53123 * 109.27692 * 300.82012 * 4 3 2 6 6 C 1.52996 * 109.52114 * 177.56013 * 5 4 3 7 7 C 1.50699 * 109.47013 * 175.12698 * 6 5 4 8 8 O 1.21277 * 120.00088 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00068 * 180.02562 * 7 6 5 10 10 C 1.47506 * 118.75688 * 359.97438 * 9 7 6 11 11 C 1.53577 * 111.02505 * 138.37566 * 10 9 7 12 12 C 1.51531 * 109.58276 * 320.02015 * 11 10 9 13 13 O 1.42157 * 108.76277 * 91.40090 * 12 11 10 14 14 C 1.38014 * 119.43652 * 272.77791 * 13 12 11 15 15 H 1.09002 * 109.46972 * 303.42229 * 14 13 12 16 16 C 1.53000 * 109.46837 * 183.42652 * 14 13 12 17 17 N 1.46493 * 109.47092 * 64.99856 * 16 14 13 18 18 C 1.36938 * 120.00143 * 180.02562 * 17 16 14 19 19 H 1.08007 * 119.99598 * 359.97438 * 18 17 16 20 20 C 1.38812 * 120.00304 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99689 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 119.99909 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46818 * 90.00081 * 22 20 18 24 24 H 1.48500 * 109.47323 * 209.99743 * 22 20 18 25 25 H 1.48499 * 109.47500 * 330.00267 * 22 20 18 26 26 C 1.45122 * 118.75719 * 180.02562 * 9 7 6 27 27 C 1.53117 * 109.21154 * 57.62355 * 5 4 3 28 28 C 1.46843 * 110.99993 * 124.21320 * 2 1 3 29 29 H 1.08998 * 109.47052 * 59.99913 * 1 2 3 30 30 H 1.08997 * 109.47422 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46523 * 299.99682 * 1 2 3 32 32 H 1.09001 * 109.46576 * 65.82337 * 3 2 1 33 33 H 1.09007 * 109.46247 * 305.85864 * 3 2 1 34 34 H 1.09003 * 109.50342 * 180.88405 * 4 3 2 35 35 H 1.08996 * 109.53688 * 60.78314 * 4 3 2 36 36 H 1.09002 * 109.52203 * 297.68277 * 5 4 3 37 37 H 1.09005 * 109.47265 * 55.12698 * 6 5 4 38 38 H 1.08996 * 109.47290 * 295.12660 * 6 5 4 39 39 H 1.08995 * 109.16865 * 17.97304 * 10 9 7 40 40 H 1.09000 * 109.12483 * 258.74226 * 10 9 7 41 41 H 1.09004 * 109.45206 * 199.98247 * 11 10 9 42 42 H 1.09002 * 109.43248 * 80.04570 * 11 10 9 43 43 H 1.09003 * 109.58958 * 331.61962 * 12 11 10 44 44 H 1.09003 * 109.59014 * 211.18347 * 12 11 10 45 45 H 1.09002 * 109.46780 * 184.99717 * 16 14 13 46 46 H 1.09001 * 109.47266 * 304.99602 * 16 14 13 47 47 H 0.96998 * 120.00240 * 359.97438 * 17 16 14 48 48 H 0.97005 * 119.99116 * 180.02562 * 21 20 18 49 49 H 1.08997 * 109.46410 * 149.26544 * 26 9 7 50 50 H 1.09002 * 109.46014 * 29.30711 * 26 9 7 51 51 H 1.09001 * 109.50184 * 62.31866 * 27 5 4 52 52 H 1.09005 * 109.49993 * 182.43508 * 27 5 4 53 53 H 1.08998 * 109.46216 * 294.17492 * 28 2 1 54 54 H 1.09002 * 109.46609 * 54.14288 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5182 1.3340 -0.1468 5 6 4.1189 0.5368 1.0143 6 6 5.6361 0.4447 0.8403 7 6 6.2392 -0.2354 2.0423 8 8 5.5258 -0.6092 2.9490 9 7 7.5715 -0.4273 2.1102 10 6 8.4135 0.0387 0.9922 11 6 9.7006 0.6979 1.5093 12 6 9.3854 1.5392 2.7296 13 8 9.5487 0.7376 3.8922 14 6 8.4902 -0.0231 4.3458 15 1 7.6305 0.6220 4.5268 16 6 8.8860 -0.7227 5.6476 17 7 9.1173 0.2802 6.6901 18 6 9.4851 -0.1133 7.9491 19 1 9.6042 -1.1630 8.1736 20 6 9.7049 0.8370 8.9368 21 7 10.0579 0.4587 10.1471 22 14 9.4996 2.6526 8.5484 23 1 8.0970 3.0604 8.8158 24 1 10.4179 3.4484 9.4020 25 1 9.8207 2.8923 7.1184 26 6 8.1234 -1.0856 3.2798 27 6 3.5183 -0.8717 1.0223 28 6 1.9953 -0.7708 1.1337 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.7326 1.8608 0.9376 33 1 1.5635 1.9257 -0.8330 34 1 3.9100 2.3511 -0.1310 35 1 3.7819 0.8571 -1.0907 36 1 3.8898 1.0359 1.9558 37 1 6.0523 1.4475 0.7434 38 1 5.8648 -0.1318 -0.0560 39 1 7.8536 0.7624 0.4001 40 1 8.6750 -0.8123 0.3633 41 1 10.1219 1.3325 0.7297 42 1 10.4213 -0.0747 1.7773 43 1 8.3566 1.8949 2.6725 44 1 10.0664 2.3892 2.7732 45 1 8.0838 -1.3919 5.9588 46 1 9.7979 -1.2981 5.4882 47 1 9.0108 1.2229 6.4884 48 1 10.2111 1.1228 10.8373 49 1 9.0181 -1.6398 2.9964 50 1 7.3852 -1.7741 3.6912 51 1 3.7815 -1.3848 0.0973 52 1 3.9103 -1.4296 1.8728 53 1 1.7325 -0.2709 2.0659 54 1 1.5635 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201567708.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:00 Heat of formation + Delta-G solvation = -85.806953 kcal Electronic energy + Delta-G solvation = -31189.844008 eV Core-core repulsion = 27160.879543 eV Total energy + Delta-G solvation = -4028.964465 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.76773 -40.30197 -39.33395 -37.02828 -36.30958 -35.47431 -34.32580 -33.00654 -31.76789 -31.21044 -29.94397 -27.94978 -26.85570 -26.03071 -24.22337 -24.09367 -23.08608 -22.57008 -22.35082 -20.68312 -19.83948 -19.82809 -18.33254 -17.76037 -17.56381 -17.02288 -16.73651 -16.52438 -16.15539 -16.02680 -15.98528 -15.52211 -15.19911 -15.14029 -14.88519 -14.74739 -14.64468 -14.05829 -14.01611 -13.96151 -13.66330 -13.54275 -13.31931 -13.23916 -13.07424 -12.88345 -12.75600 -12.57988 -12.40697 -12.35532 -12.17338 -12.09769 -11.99777 -11.85199 -11.61692 -11.51632 -11.41252 -11.21295 -11.05958 -10.64636 -10.55507 -9.61458 -9.34920 -9.33916 -8.06207 -5.39479 1.33514 1.36749 1.45233 1.62102 1.96569 2.45228 2.67834 2.99323 3.25284 3.44109 3.50229 3.71991 3.81581 3.84895 3.96426 3.98308 4.03043 4.09562 4.21192 4.24512 4.29692 4.31298 4.39146 4.46042 4.47224 4.52410 4.59609 4.62773 4.64681 4.69262 4.74152 4.76603 4.83316 4.86973 4.88460 4.91459 4.98220 4.99673 5.05179 5.10473 5.12879 5.19207 5.21239 5.32840 5.49408 5.56970 5.69963 6.07938 6.13092 6.17239 6.33511 6.70446 7.02781 7.19840 7.78452 7.98758 9.15216 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013347 B = 0.002625 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.278768 B =10664.178551 C =11645.043705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.549 5.549 3 C 0.051 3.949 4 C -0.103 4.103 5 C -0.073 4.073 6 C -0.125 4.125 7 C 0.497 3.503 8 O -0.577 6.577 9 N -0.611 5.611 10 C 0.100 3.900 11 C -0.158 4.158 12 C 0.062 3.938 13 O -0.400 6.400 14 C 0.103 3.897 15 H 0.027 0.973 16 C 0.165 3.835 17 N -0.754 5.754 18 C -0.236 4.236 19 H 0.059 0.941 20 C -0.063 4.063 21 N -0.981 5.981 22 Si 0.955 3.045 23 H -0.280 1.280 24 H -0.289 1.289 25 H -0.256 1.256 26 C 0.094 3.906 27 C -0.111 4.111 28 C 0.058 3.942 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.045 0.955 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.115 0.885 40 H 0.090 0.910 41 H 0.121 0.879 42 H 0.071 0.929 43 H 0.046 0.954 44 H 0.097 0.903 45 H 0.039 0.961 46 H 0.036 0.964 47 H 0.365 0.635 48 H 0.259 0.741 49 H 0.099 0.901 50 H 0.077 0.923 51 H 0.073 0.927 52 H 0.059 0.941 53 H 0.014 0.986 54 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.400 2.942 -34.145 36.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.273 5.273 3 C -0.077 4.077 4 C -0.141 4.141 5 C -0.092 4.092 6 C -0.164 4.164 7 C 0.288 3.712 8 O -0.457 6.457 9 N -0.344 5.344 10 C -0.021 4.021 11 C -0.196 4.196 12 C -0.014 4.014 13 O -0.319 6.319 14 C 0.043 3.957 15 H 0.045 0.955 16 C 0.038 3.962 17 N -0.399 5.399 18 C -0.367 4.367 19 H 0.077 0.923 20 C -0.255 4.255 21 N -0.632 5.632 22 Si 0.783 3.217 23 H -0.206 1.206 24 H -0.215 1.215 25 H -0.181 1.181 26 C -0.031 4.031 27 C -0.148 4.148 28 C -0.070 4.070 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.037 0.963 32 H 0.038 0.962 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.064 0.936 37 H 0.136 0.864 38 H 0.141 0.859 39 H 0.133 0.867 40 H 0.108 0.892 41 H 0.139 0.861 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.115 0.885 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.198 0.802 48 H 0.068 0.932 49 H 0.117 0.883 50 H 0.095 0.905 51 H 0.092 0.908 52 H 0.077 0.923 53 H 0.032 0.968 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.378 2.343 -33.893 36.158 hybrid contribution -0.575 1.110 1.710 2.118 sum -12.954 3.452 -32.182 34.863 Atomic orbital electron populations 1.22414 0.86657 1.02521 1.00958 1.62022 1.08287 1.14197 1.42831 1.22178 0.96359 0.88741 1.00421 1.21620 0.93545 1.00696 0.98243 1.20928 0.93215 0.96425 0.98621 1.21827 0.95577 1.03003 0.95979 1.21605 0.81832 0.78692 0.89100 1.90694 1.61029 1.52183 1.41768 1.48111 1.06982 1.59031 1.20255 1.22347 0.91837 1.00788 0.87098 1.22441 0.97852 1.00821 0.98506 1.22458 1.01211 0.93436 0.84260 1.86348 1.38964 1.60256 1.46318 1.21918 0.88568 0.92313 0.92947 0.95512 1.20736 0.98452 0.91349 0.85663 1.42586 1.84549 1.04720 1.08057 1.19065 1.37265 0.93530 0.86815 0.92277 1.25490 1.02047 1.02578 0.95348 1.69882 1.55574 1.34449 1.03291 0.85392 0.77593 0.80522 0.78239 1.20648 1.21499 1.18088 1.22048 1.00074 0.94944 0.86025 1.21660 0.93822 0.97178 1.02163 1.22036 0.96096 0.98064 0.90815 0.90003 0.91019 0.96251 0.96236 0.89150 0.89685 0.89687 0.93646 0.86407 0.85891 0.86741 0.89165 0.86077 0.90997 0.93536 0.88450 0.94312 0.94593 0.80213 0.93207 0.88309 0.90463 0.90830 0.92261 0.96766 0.90733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.59 127.69 1.22 1.52 16 2 N -0.55 -8.89 4.91 -922.60 -4.53 -13.43 16 3 C 0.05 0.70 5.46 86.33 0.47 1.17 16 4 C -0.10 -1.17 5.38 30.65 0.16 -1.01 16 5 C -0.07 -1.21 1.90 -10.71 -0.02 -1.23 16 6 C -0.12 -1.60 3.52 29.85 0.10 -1.50 16 7 C 0.50 11.20 7.36 87.66 0.65 11.85 16 8 O -0.58 -18.81 13.41 -3.02 -0.04 -18.85 16 9 N -0.61 -12.29 2.19 -817.76 -1.79 -14.08 16 10 C 0.10 1.06 6.00 86.38 0.52 1.58 16 11 C -0.16 -2.03 5.78 30.31 0.18 -1.85 16 12 C 0.06 1.32 6.37 71.50 0.46 1.77 16 13 O -0.40 -12.92 9.38 -117.86 -1.11 -14.03 16 14 C 0.10 3.50 2.68 31.25 0.08 3.59 16 15 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 16 C 0.16 6.99 5.92 86.38 0.51 7.51 16 17 N -0.75 -39.10 5.34 -343.45 -1.83 -40.93 16 18 C -0.24 -14.43 10.47 84.03 0.88 -13.55 16 19 H 0.06 3.90 8.06 -2.91 -0.02 3.87 16 20 C -0.06 -3.93 5.50 84.86 0.47 -3.46 16 21 N -0.98 -65.34 13.97 21.65 0.30 -65.04 16 22 Si 0.96 48.40 27.73 68.60 1.90 50.30 16 23 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 24 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 25 H -0.26 -12.05 6.52 99.48 0.65 -11.40 16 26 C 0.09 2.50 4.87 87.29 0.43 2.93 16 27 C -0.11 -2.14 5.09 30.65 0.16 -1.99 16 28 C 0.06 1.12 5.46 86.33 0.47 1.59 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16 31 H 0.02 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.02 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.09 0.96 8.12 -2.38 -0.02 0.94 16 34 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.04 1.04 7.96 -2.39 -0.02 1.02 16 37 H 0.12 0.95 7.41 -2.38 -0.02 0.93 16 38 H 0.12 0.92 8.04 -2.39 -0.02 0.90 16 39 H 0.11 0.54 5.88 -2.39 -0.01 0.52 16 40 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.12 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.07 1.14 8.01 -2.39 -0.02 1.13 16 43 H 0.05 0.98 7.40 -2.39 -0.02 0.97 16 44 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.36 18.49 5.52 -92.71 -0.51 17.98 16 48 H 0.26 16.32 8.31 -92.70 -0.77 15.55 16 49 H 0.10 2.30 8.11 -2.39 -0.02 2.28 16 50 H 0.08 2.33 7.27 -2.39 -0.02 2.31 16 51 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 52 H 0.06 1.51 6.03 -2.38 -0.01 1.50 16 53 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 54 H 0.07 1.36 8.09 -2.39 -0.02 1.34 16 Total: -1.00 -81.51 407.18 -0.07 -81.58 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 0.29 Total: 25.56 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 6.74 Total: 8.91 kcal Atomic # 7 Polarization: -125.62 SS G_CDS: -7.85 Total: -133.47 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -1.15 Total: -32.88 kcal Atomic # 14 Polarization: 48.40 SS G_CDS: 1.90 Total: 50.30 kcal Total: -81.51 -0.07 -81.58 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201567708.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.228 kcal (2) G-P(sol) polarization free energy of solvation -81.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds