Wall clock time and date at job start Sat Apr 11 2020 05:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00016 * 2 1 4 4 H 1.09005 * 109.47092 * 30.00113 * 3 2 1 5 5 C 1.50696 * 109.47332 * 149.99967 * 3 2 1 6 6 O 1.21284 * 119.99776 * 39.04368 * 5 3 2 7 7 N 1.34774 * 120.00386 * 218.77358 * 5 3 2 8 8 C 1.46507 * 119.99810 * 356.48793 * 7 5 3 9 9 C 1.46494 * 120.00364 * 176.49296 * 7 5 3 10 10 C 1.53005 * 109.47532 * 89.99809 * 9 7 5 11 11 N 1.46896 * 109.47355 * 179.97438 * 10 9 7 12 12 C 1.46895 * 110.99956 * 294.30268 * 11 10 9 13 13 C 1.53247 * 109.34098 * 172.74583 * 12 11 10 14 14 N 1.47086 * 108.51827 * 53.82621 * 13 12 11 15 15 C 1.36932 * 120.88119 * 128.83946 * 14 13 12 16 16 H 1.08001 * 120.00379 * 210.01327 * 15 14 13 17 17 C 1.38821 * 119.99845 * 30.01070 * 15 14 13 18 18 N 1.31619 * 119.99895 * 9.92247 * 17 15 14 19 19 Si 1.86801 * 119.99805 * 189.91731 * 17 15 14 20 20 H 1.48499 * 109.46914 * 60.00484 * 19 17 15 21 21 H 1.48507 * 109.46777 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47222 * 300.00272 * 19 17 15 23 23 C 1.47079 * 118.23788 * 308.81491 * 14 13 12 24 24 C 1.46896 * 111.00121 * 169.99406 * 11 10 9 25 25 C 1.53002 * 109.46959 * 270.00167 * 3 2 1 26 26 C 1.53782 * 113.61302 * 159.21902 * 25 3 2 27 27 C 1.53781 * 87.08122 * 220.01720 * 26 25 3 28 28 C 1.53771 * 113.61495 * 61.72243 * 25 3 2 29 29 H 1.09000 * 109.47336 * 59.99677 * 1 2 3 30 30 H 1.08998 * 109.47196 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47289 * 300.00075 * 1 2 3 32 32 H 1.09000 * 109.47171 * 93.84013 * 8 7 5 33 33 H 1.09000 * 109.47213 * 213.84577 * 8 7 5 34 34 H 1.09001 * 109.46789 * 333.84036 * 8 7 5 35 35 H 1.09004 * 109.47059 * 209.99728 * 9 7 5 36 36 H 1.09000 * 109.47435 * 329.99819 * 9 7 5 37 37 H 1.09004 * 109.46883 * 300.00027 * 10 9 7 38 38 H 1.09000 * 109.46751 * 59.99592 * 10 9 7 39 39 H 1.08993 * 109.49162 * 292.70256 * 12 11 10 40 40 H 1.08997 * 109.49670 * 52.78393 * 12 11 10 41 41 H 1.08998 * 109.62650 * 294.12239 * 13 12 11 42 42 H 1.08996 * 109.63347 * 173.53777 * 13 12 11 43 43 H 0.96997 * 119.99649 * 179.97438 * 18 17 15 44 44 H 1.09002 * 109.62948 * 291.47599 * 23 14 13 45 45 H 1.08996 * 109.78951 * 170.98895 * 23 14 13 46 46 H 1.09001 * 109.49416 * 307.21998 * 24 11 10 47 47 H 1.08999 * 109.48904 * 67.29626 * 24 11 10 48 48 H 1.09001 * 112.84804 * 290.52695 * 25 3 2 49 49 H 1.08997 * 113.61628 * 334.56948 * 26 25 3 50 50 H 1.09003 * 113.61079 * 105.46945 * 26 25 3 51 51 H 1.09006 * 113.61179 * 270.88587 * 27 26 25 52 52 H 1.08993 * 113.68805 * 139.99329 * 27 26 25 53 53 H 1.09002 * 113.61962 * 254.53107 * 28 25 3 54 54 H 1.09002 * 113.61762 * 25.43658 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 3.3386 1.2640 0.7104 6 8 4.0776 0.3143 0.5592 7 7 3.7077 2.2846 1.5094 8 6 2.8531 3.4687 1.6272 9 6 4.9636 2.2101 2.2600 10 6 6.0974 2.7969 1.4168 11 7 7.3566 2.7227 2.1697 12 6 7.3115 3.5863 3.3571 13 6 8.5629 3.3448 4.2081 14 7 9.7486 3.5207 3.3557 15 6 10.7749 4.3417 3.7399 16 1 11.3696 4.8481 2.9941 17 6 11.0509 4.5233 5.0883 18 7 10.4626 3.7643 5.9884 19 14 12.2573 5.8446 5.6250 20 1 11.7678 7.1731 5.1770 21 1 12.3758 5.8348 7.1053 22 1 13.5865 5.5768 5.0196 23 6 9.8029 2.7910 2.0798 24 6 8.5027 3.0542 1.3128 25 6 2.2176 1.7714 -1.4425 26 6 2.3496 3.2969 -1.5842 27 6 1.4949 3.1738 -2.8567 28 6 0.9116 1.8887 -2.2457 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.1909 3.3549 2.4855 33 1 3.4749 4.3536 1.7628 34 1 2.2576 3.5786 0.7209 35 1 4.8679 2.7778 3.1856 36 1 5.1860 1.1689 2.4937 37 1 6.1931 2.2292 0.4912 38 1 5.8750 3.8380 1.1830 39 1 7.2790 4.6305 3.0464 40 1 6.4226 3.3529 3.9431 41 1 8.5451 2.3300 4.6056 42 1 8.5920 4.0620 5.0284 43 1 10.6558 3.8909 6.9305 44 1 9.9043 1.7230 2.2729 45 1 10.6519 3.1389 1.4915 46 1 8.4776 2.4350 0.4160 47 1 8.4535 4.1059 1.0305 48 1 2.9993 1.2143 -1.9590 49 1 1.8628 3.8536 -0.7834 50 1 3.3696 3.6312 -1.7740 51 1 2.0795 3.0014 -3.7603 52 1 0.7634 3.9736 -2.9719 53 1 0.7705 1.0861 -2.9697 54 1 0.0316 2.0604 -1.6258 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664777719.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:11 Heat of formation + Delta-G solvation = -30.944572 kcal Electronic energy + Delta-G solvation = -31045.400514 eV Core-core repulsion = 27018.815061 eV Total energy + Delta-G solvation = -4026.585454 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.69971 -40.00770 -39.41246 -37.96453 -37.03226 -35.96246 -33.48202 -31.66700 -31.55596 -29.99295 -28.18282 -27.47155 -27.14620 -26.47555 -25.29176 -24.39010 -24.07090 -22.68669 -20.85900 -20.64520 -20.27468 -18.78116 -18.47201 -17.84595 -17.45924 -17.03600 -16.77681 -16.41836 -16.09703 -16.02104 -15.81077 -15.43555 -15.29460 -15.04047 -14.96422 -14.76726 -14.49967 -14.22199 -14.02189 -13.94895 -13.58378 -13.27863 -13.23474 -13.10444 -12.93096 -12.88274 -12.78333 -12.64544 -12.47177 -12.33213 -12.15476 -12.01936 -11.87500 -11.85562 -11.58769 -11.43156 -11.41556 -11.21657 -10.88489 -10.59751 -10.30210 -9.79344 -9.27259 -8.64094 -7.86780 -5.37744 1.40386 1.46901 1.49094 1.56158 1.70802 2.50212 2.84607 3.06342 3.29541 3.34542 3.63501 3.65120 3.66839 3.81993 3.85640 3.91129 4.03249 4.09198 4.15094 4.24978 4.31920 4.33076 4.42497 4.51077 4.52094 4.53886 4.57621 4.64891 4.68021 4.71116 4.78564 4.79134 4.83061 4.86383 4.92148 4.95130 4.98396 5.03379 5.08229 5.08900 5.17865 5.23207 5.36352 5.40245 5.52489 5.60139 5.70721 6.02968 6.15325 6.22367 6.34144 6.39547 7.08135 7.14080 7.82167 8.38697 9.19525 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.024314 B = 0.002154 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.334583 B =12994.552118 C =13284.969990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.396 6.396 3 C 0.091 3.909 4 H 0.113 0.887 5 C 0.508 3.492 6 O -0.573 6.573 7 N -0.607 5.607 8 C 0.055 3.945 9 C 0.125 3.875 10 C 0.057 3.943 11 N -0.545 5.545 12 C 0.051 3.949 13 C 0.185 3.815 14 N -0.615 5.615 15 C -0.266 4.266 16 H 0.066 0.934 17 C -0.051 4.051 18 N -0.937 5.937 19 Si 0.974 3.026 20 H -0.275 1.275 21 H -0.293 1.293 22 H -0.277 1.277 23 C 0.145 3.855 24 C 0.059 3.941 25 C -0.136 4.136 26 C -0.138 4.138 27 C -0.134 4.134 28 C -0.127 4.127 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.043 0.957 39 H 0.025 0.975 40 H 0.086 0.914 41 H -0.006 1.006 42 H 0.063 0.937 43 H 0.251 0.749 44 H 0.011 0.989 45 H 0.062 0.938 46 H 0.082 0.918 47 H 0.028 0.972 48 H 0.071 0.929 49 H 0.110 0.890 50 H 0.062 0.938 51 H 0.076 0.924 52 H 0.089 0.911 53 H 0.069 0.931 54 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.480 2.167 -15.290 31.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.315 6.315 3 C 0.030 3.970 4 H 0.131 0.869 5 C 0.296 3.704 6 O -0.451 6.451 7 N -0.341 5.341 8 C -0.086 4.086 9 C 0.002 3.998 10 C -0.071 4.071 11 N -0.271 5.271 12 C -0.078 4.078 13 C 0.059 3.941 14 N -0.339 5.339 15 C -0.396 4.396 16 H 0.084 0.916 17 C -0.246 4.246 18 N -0.583 5.583 19 Si 0.802 3.198 20 H -0.201 1.201 21 H -0.219 1.219 22 H -0.202 1.202 23 C 0.019 3.981 24 C -0.070 4.070 25 C -0.155 4.155 26 C -0.175 4.175 27 C -0.171 4.171 28 C -0.164 4.164 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.043 0.957 40 H 0.104 0.896 41 H 0.013 0.987 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.029 0.971 45 H 0.080 0.920 46 H 0.100 0.900 47 H 0.047 0.953 48 H 0.090 0.910 49 H 0.128 0.872 50 H 0.081 0.919 51 H 0.095 0.905 52 H 0.108 0.892 53 H 0.087 0.913 54 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -26.901 1.029 -15.036 30.835 hybrid contribution 1.037 1.023 0.406 1.512 sum -25.864 2.052 -14.630 29.785 Atomic orbital electron populations 1.23307 0.78544 1.04353 1.02015 1.87994 1.22158 1.26203 1.95137 1.22135 0.91751 0.86929 0.96175 0.86921 1.21157 0.88878 0.81754 0.78648 1.90705 1.55592 1.35708 1.63084 1.47889 1.22212 1.19180 1.44784 1.22458 0.95331 0.86534 1.04291 1.21319 0.82185 1.02064 0.94225 1.22256 0.89196 0.99136 0.96562 1.61776 1.02601 1.54612 1.08090 1.22664 0.99529 0.93477 0.92133 1.20659 0.83817 0.97409 0.92177 1.44362 1.18181 1.51494 1.19852 1.19495 1.09520 1.19335 0.91276 0.91590 1.25959 1.00832 1.01122 0.96700 1.70142 1.46959 1.40673 1.00548 0.85250 0.79037 0.79077 0.76476 1.20110 1.21857 1.20246 1.21100 0.95486 0.94148 0.87373 1.22410 0.91039 0.98327 0.95258 1.23015 1.00872 0.98013 0.93605 1.23179 1.01231 0.93344 0.99747 1.22777 0.99402 0.98137 0.96813 1.23020 0.95839 0.98582 0.98934 0.91148 0.88793 0.92365 0.90316 0.89555 0.88426 0.88579 0.91989 0.92226 0.93923 0.95721 0.89598 0.98749 0.91904 0.93973 0.97115 0.91980 0.89965 0.95340 0.91030 0.87203 0.91923 0.90529 0.89208 0.91252 0.87737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 10.59 113.37 1.20 1.35 16 2 O -0.40 -8.75 10.12 -133.71 -1.35 -10.10 16 3 C 0.09 1.66 1.91 29.85 0.06 1.72 16 4 H 0.11 1.21 5.79 -2.38 -0.01 1.20 16 5 C 0.51 13.51 6.76 87.66 0.59 14.11 16 6 O -0.57 -21.76 16.49 12.23 0.20 -21.56 16 7 N -0.61 -13.13 2.87 -846.74 -2.43 -15.56 16 8 C 0.05 0.61 9.89 127.77 1.26 1.87 16 9 C 0.13 3.38 5.33 86.38 0.46 3.84 16 10 C 0.06 1.70 5.29 86.31 0.46 2.15 16 11 N -0.55 -20.04 4.63 -895.27 -4.14 -24.19 16 12 C 0.05 1.97 5.46 86.39 0.47 2.44 16 13 C 0.19 9.35 5.36 86.35 0.46 9.81 16 14 N -0.61 -32.54 3.03 -698.10 -2.12 -34.65 16 15 C -0.27 -15.04 9.64 84.04 0.81 -14.23 16 16 H 0.07 3.61 7.85 -2.91 -0.02 3.59 16 17 C -0.05 -2.89 5.08 84.86 0.43 -2.46 16 18 N -0.94 -56.32 10.97 21.65 0.24 -56.08 16 19 Si 0.97 45.23 29.57 68.60 2.03 47.26 16 20 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 23 C 0.14 6.51 6.69 86.35 0.58 7.09 16 24 C 0.06 2.20 5.62 86.38 0.49 2.68 16 25 C -0.14 -2.13 3.34 -10.27 -0.03 -2.17 16 26 C -0.14 -1.45 6.97 31.12 0.22 -1.24 16 27 C -0.13 -1.14 8.08 31.12 0.25 -0.89 16 28 C -0.13 -1.21 6.13 31.12 0.19 -1.02 16 29 H 0.07 0.51 5.05 -2.39 -0.01 0.50 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 0.47 8.08 -2.39 -0.02 0.45 16 32 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.09 0.86 8.10 -2.39 -0.02 0.84 16 34 H 0.10 0.67 2.94 -2.39 -0.01 0.66 16 35 H 0.10 2.28 6.33 -2.39 -0.02 2.26 16 36 H 0.06 2.09 7.48 -2.39 -0.02 2.07 16 37 H 0.06 1.92 7.97 -2.39 -0.02 1.90 16 38 H 0.04 1.13 8.12 -2.39 -0.02 1.11 16 39 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.09 2.86 6.16 -2.39 -0.01 2.84 16 41 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 42 H 0.06 3.49 6.15 -2.39 -0.01 3.48 16 43 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 44 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.06 2.65 7.96 -2.39 -0.02 2.63 16 46 H 0.08 2.72 7.99 -2.39 -0.02 2.70 16 47 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.11 0.63 5.65 -2.39 -0.01 0.61 16 50 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 52 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 53 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 54 H 0.10 0.56 6.51 -2.39 -0.02 0.54 16 Total: -1.00 -78.08 407.12 1.19 -76.89 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.87 Total: 12.93 kcal Atomic # 6 Polarization: 17.17 SS G_CDS: 7.89 Total: 25.07 kcal Atomic # 7 Polarization: -122.03 SS G_CDS: -8.46 Total: -130.48 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -1.15 Total: -31.66 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -78.08 1.19 -76.89 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664777719.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.945 kcal (2) G-P(sol) polarization free energy of solvation -78.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds