Wall clock time and date at job start Sat Apr 11 2020 05:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36939 * 119.99916 * 2 1 4 4 H 1.08004 * 119.99687 * 204.05814 * 3 2 1 5 5 C 1.38807 * 120.00126 * 24.06744 * 3 2 1 6 6 N 1.31615 * 120.00156 * 14.29208 * 5 3 2 7 7 Si 1.86794 * 119.99938 * 194.29658 * 5 3 2 8 8 H 1.48494 * 109.47589 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.47283 * 119.99920 * 7 5 3 10 10 H 1.48505 * 109.47154 * 239.99499 * 7 5 3 11 11 C 1.46505 * 119.99785 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.46932 * 269.99478 * 11 2 1 13 13 C 1.52995 * 109.47342 * 180.02562 * 12 11 2 14 14 C 1.53042 * 109.46583 * 185.00209 * 13 12 11 15 15 C 1.53184 * 109.31511 * 178.61665 * 14 13 12 16 16 N 1.46922 * 108.77656 * 54.63573 * 15 14 13 17 17 C 1.34781 * 120.62955 * 126.37233 * 16 15 14 18 18 O 1.21280 * 119.99612 * 184.65819 * 17 16 15 19 19 C 1.50701 * 120.00030 * 4.65230 * 17 16 15 20 20 H 1.09002 * 109.50667 * 307.56020 * 19 17 16 21 21 C 1.53099 * 109.50564 * 67.64759 * 19 17 16 22 22 N 1.47010 * 109.25839 * 176.82540 * 21 19 17 23 23 C 1.46897 * 110.99975 * 177.61010 * 22 21 19 24 24 C 1.47018 * 110.75541 * 301.38798 * 22 21 19 25 25 C 1.53098 * 109.29392 * 58.59180 * 24 22 21 26 26 O 1.43017 * 109.54011 * 187.45316 * 19 17 16 27 27 C 1.46926 * 118.73788 * 306.64037 * 16 15 14 28 28 C 1.52760 * 109.00724 * 53.31295 * 27 16 15 29 29 H 1.08991 * 109.46893 * 272.73779 * 1 2 3 30 30 H 1.09001 * 109.46805 * 32.74122 * 1 2 3 31 31 H 1.09007 * 109.47010 * 152.73783 * 1 2 3 32 32 H 0.97000 * 120.00407 * 180.02562 * 6 5 3 33 33 H 1.09000 * 109.46966 * 150.00312 * 11 2 1 34 34 H 1.08998 * 109.47108 * 30.00129 * 11 2 1 35 35 H 1.09000 * 109.46861 * 60.00127 * 12 11 2 36 36 H 1.08998 * 109.47292 * 300.00518 * 12 11 2 37 37 H 1.09004 * 109.45149 * 304.97381 * 13 12 11 38 38 H 1.09001 * 109.49436 * 58.66391 * 14 13 12 39 39 H 1.08995 * 109.49481 * 298.57314 * 14 13 12 40 40 H 1.09002 * 109.58685 * 294.84197 * 15 14 13 41 41 H 1.09009 * 109.58585 * 174.42620 * 15 14 13 42 42 H 1.08997 * 109.50410 * 56.89571 * 21 19 17 43 43 H 1.08996 * 109.50941 * 296.76288 * 21 19 17 44 44 H 1.09010 * 109.47070 * 179.68265 * 23 22 21 45 45 H 1.09000 * 109.47115 * 299.67831 * 23 22 21 46 46 H 1.08996 * 109.47473 * 59.68406 * 23 22 21 47 47 H 1.09000 * 109.51132 * 178.54865 * 24 22 21 48 48 H 1.08997 * 109.50267 * 298.64043 * 24 22 21 49 49 H 1.08999 * 109.50689 * 63.10876 * 25 24 22 50 50 H 1.08997 * 109.50973 * 183.24371 * 25 24 22 51 51 H 1.09007 * 109.58150 * 173.14605 * 27 16 15 52 52 H 1.08990 * 109.58802 * 293.56813 * 27 16 15 53 53 H 1.08995 * 109.56291 * 185.55110 * 28 27 16 54 54 H 1.09004 * 109.36402 * 65.49339 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1593 1.2265 -0.3813 5 6 1.5462 2.3358 0.4902 6 7 0.4444 2.2473 1.2048 7 14 2.2976 4.0088 0.1357 8 1 3.5251 3.8369 -0.6821 9 1 1.3197 4.8431 -0.6079 10 1 2.6455 4.6765 1.4157 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4417 13 6 3.2180 -3.0357 1.4412 14 6 3.3641 -3.5408 2.8785 15 6 4.1006 -4.8840 2.8711 16 7 5.3739 -4.7213 2.1563 17 6 6.5368 -5.0816 2.7346 18 8 7.5877 -4.8648 2.1693 19 6 6.5312 -5.7537 4.0834 20 1 5.9496 -5.1562 4.7854 21 6 5.9075 -7.1462 3.9581 22 7 5.9739 -7.8262 5.2598 23 6 5.3336 -9.1468 5.1971 24 6 7.3660 -7.9369 5.7194 25 6 7.9760 -6.5368 5.8268 26 8 7.8735 -5.8792 4.5608 27 6 5.3559 -4.1528 0.8016 28 6 4.6049 -2.8229 0.8301 29 1 -0.3633 0.0491 1.0264 30 1 -0.3633 0.8644 -0.5558 31 1 -0.3633 -0.9136 -0.4708 32 1 0.0224 3.0509 1.5471 33 1 3.1499 -1.1382 -0.5143 34 1 1.6084 -2.0282 -0.5148 35 1 1.5001 -1.8415 1.9555 36 1 3.0416 -0.9516 1.9558 37 1 2.6705 -3.7711 0.8517 38 1 2.3763 -3.6699 3.3209 39 1 3.9330 -2.8172 3.4623 40 1 3.4905 -5.6324 2.3652 41 1 4.2946 -5.2000 3.8961 42 1 6.4571 -7.7257 3.2163 43 1 4.8665 -7.0523 3.6491 44 1 5.4019 -9.6303 6.1717 45 1 4.2854 -9.0297 4.9223 46 1 5.8385 -9.7604 4.4510 47 1 7.3895 -8.4200 6.6962 48 1 7.9387 -8.5296 5.0061 49 1 7.4370 -5.9617 6.5797 50 1 9.0250 -6.6177 6.1118 51 1 6.3782 -3.9865 0.4617 52 1 4.8505 -4.8403 0.1235 53 1 4.5003 -2.4410 -0.1854 54 1 5.1621 -2.1060 1.4333 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667410336.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:52 Heat of formation + Delta-G solvation = -72.295662 kcal Electronic energy + Delta-G solvation = -30864.813217 eV Core-core repulsion = 26836.434645 eV Total energy + Delta-G solvation = -4028.378572 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.79146 -40.20669 -38.90291 -37.49920 -36.72036 -35.28373 -33.36915 -32.85070 -31.75118 -30.34507 -29.59743 -27.90410 -26.88351 -25.89410 -25.17458 -24.17098 -23.82619 -22.22122 -21.66189 -21.17516 -20.15305 -18.73347 -18.51753 -17.73396 -17.20800 -16.83628 -16.77842 -16.50559 -16.05738 -15.84965 -15.60107 -15.50881 -15.36973 -15.24434 -14.97352 -14.79416 -14.46107 -14.28498 -14.08133 -13.99862 -13.68666 -13.32372 -13.13164 -12.96653 -12.85312 -12.81775 -12.78978 -12.57944 -12.46469 -12.44973 -12.16942 -12.04918 -12.00879 -11.81815 -11.66798 -11.49934 -11.36253 -11.11928 -10.81128 -10.74171 -10.61474 -9.72308 -9.52541 -8.72266 -7.82983 -5.29693 1.38308 1.43700 1.45434 1.55447 1.65448 2.51157 2.68100 2.84367 3.30404 3.43702 3.61308 3.67904 3.78780 3.86925 3.88191 3.93354 4.04416 4.11662 4.13512 4.27138 4.34367 4.41641 4.45296 4.48901 4.57144 4.58898 4.61511 4.63972 4.75861 4.78603 4.80666 4.83774 4.85321 4.88620 4.92827 5.03172 5.04935 5.11536 5.12528 5.20892 5.30518 5.35435 5.49330 5.56497 5.62383 5.68792 5.75513 5.77020 5.87557 5.96715 6.30508 6.36591 7.02307 7.17499 7.91642 8.34527 9.21059 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.020071 B = 0.002151 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.720381 B =13014.902621 C =13406.455990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.623 5.623 3 C -0.256 4.256 4 H 0.065 0.935 5 C -0.055 4.055 6 N -0.937 5.937 7 Si 0.962 3.038 8 H -0.268 1.268 9 H -0.290 1.290 10 H -0.293 1.293 11 C 0.147 3.853 12 C -0.115 4.115 13 C -0.074 4.074 14 C -0.127 4.127 15 C 0.104 3.896 16 N -0.601 5.601 17 C 0.517 3.483 18 O -0.573 6.573 19 C 0.081 3.919 20 H 0.105 0.895 21 C 0.035 3.965 22 N -0.544 5.544 23 C 0.023 3.977 24 C 0.016 3.984 25 C 0.055 3.945 26 O -0.392 6.392 27 C 0.117 3.883 28 C -0.124 4.124 29 H 0.001 0.999 30 H 0.013 0.987 31 H 0.034 0.966 32 H 0.247 0.753 33 H 0.045 0.955 34 H 0.059 0.941 35 H 0.043 0.957 36 H 0.024 0.976 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.047 0.953 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.034 0.966 43 H 0.116 0.884 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.026 0.974 47 H 0.113 0.887 48 H 0.036 0.964 49 H 0.070 0.930 50 H 0.118 0.882 51 H 0.071 0.929 52 H 0.095 0.905 53 H 0.080 0.920 54 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.209 -26.989 9.325 29.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.346 5.346 3 C -0.387 4.387 4 H 0.083 0.917 5 C -0.250 4.250 6 N -0.584 5.584 7 Si 0.791 3.209 8 H -0.193 1.193 9 H -0.216 1.216 10 H -0.221 1.221 11 C 0.022 3.978 12 C -0.155 4.155 13 C -0.093 4.093 14 C -0.166 4.166 15 C -0.018 4.018 16 N -0.335 5.335 17 C 0.304 3.696 18 O -0.452 6.452 19 C 0.020 3.980 20 H 0.122 0.878 21 C -0.094 4.094 22 N -0.269 5.269 23 C -0.124 4.124 24 C -0.112 4.112 25 C -0.021 4.021 26 O -0.311 6.311 27 C -0.005 4.005 28 C -0.162 4.162 29 H 0.020 0.980 30 H 0.032 0.968 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.043 0.957 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.066 0.934 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.052 0.948 43 H 0.134 0.866 44 H 0.104 0.896 45 H 0.102 0.898 46 H 0.045 0.955 47 H 0.131 0.869 48 H 0.055 0.945 49 H 0.089 0.911 50 H 0.136 0.864 51 H 0.089 0.911 52 H 0.113 0.887 53 H 0.099 0.901 54 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.567 -26.422 9.305 29.294 hybrid contribution 0.555 1.121 -0.430 1.323 sum 9.123 -25.301 8.875 28.322 Atomic orbital electron populations 1.20520 0.82963 0.96148 0.97310 1.44271 1.02163 1.02045 1.86128 1.19492 0.98922 0.87058 1.33209 0.91699 1.25747 0.99014 1.01754 0.98477 1.70217 1.22446 1.27545 1.38203 0.85276 0.77984 0.80533 0.77131 1.19290 1.21643 1.22069 1.21097 0.95433 0.86421 0.94872 1.21995 0.98578 0.95841 0.99102 1.21070 0.94866 0.96622 0.96707 1.21960 1.01468 0.96479 0.96661 1.22175 0.83242 0.98042 0.98293 1.48169 1.06620 1.61607 1.17086 1.20556 0.83410 0.78577 0.87048 1.90685 1.32512 1.56440 1.65584 1.21951 0.85676 0.97194 0.93215 0.87775 1.22689 1.02753 0.92666 0.91258 1.62273 1.16898 1.21967 1.25802 1.22482 0.99935 0.87582 1.02435 1.22889 0.88245 0.97637 1.02464 1.23010 1.03059 0.91816 0.84213 1.88086 1.25043 1.79603 1.38332 1.21558 1.01454 0.94887 0.82641 1.21863 0.95963 0.96392 1.02001 0.98047 0.96837 0.94775 0.94384 0.93642 0.92270 0.93773 0.95714 0.88966 0.88947 0.93383 0.87895 0.87886 0.94755 0.86604 0.89590 0.89802 0.95535 0.86884 0.94521 0.91147 0.86445 0.91081 0.88695 0.90114 0.94131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.69 9.03 127.77 1.15 9.85 16 2 N -0.62 -31.38 2.92 -726.93 -2.12 -33.50 16 3 C -0.26 -14.32 9.63 84.03 0.81 -13.51 16 4 H 0.07 3.57 7.86 -2.91 -0.02 3.55 16 5 C -0.05 -3.14 5.05 84.86 0.43 -2.72 16 6 N -0.94 -56.33 10.87 21.65 0.24 -56.09 16 7 Si 0.96 46.15 29.58 68.60 2.03 48.18 16 8 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 9 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 10 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 11 C 0.15 5.69 5.47 86.38 0.47 6.16 16 12 C -0.11 -4.00 5.01 30.59 0.15 -3.84 16 13 C -0.07 -1.76 2.15 -10.77 -0.02 -1.78 16 14 C -0.13 -2.51 5.36 30.67 0.16 -2.35 16 15 C 0.10 1.50 5.06 86.36 0.44 1.94 16 16 N -0.60 -12.73 2.98 -819.74 -2.44 -15.17 16 17 C 0.52 13.60 7.06 87.66 0.62 14.22 16 18 O -0.57 -20.72 15.93 15.85 0.25 -20.47 16 19 C 0.08 1.65 2.37 29.88 0.07 1.72 16 20 H 0.10 1.84 7.08 -2.39 -0.02 1.82 16 21 C 0.04 0.52 4.61 86.32 0.40 0.92 16 22 N -0.54 -6.79 4.99 -921.44 -4.59 -11.38 16 23 C 0.02 0.19 9.61 127.69 1.23 1.41 16 24 C 0.02 0.19 5.66 86.31 0.49 0.67 16 25 C 0.06 0.82 7.01 72.01 0.51 1.33 16 26 O -0.39 -9.55 10.02 -130.10 -1.30 -10.86 16 27 C 0.12 2.60 6.41 86.22 0.55 3.15 16 28 C -0.12 -3.13 5.13 30.53 0.16 -2.98 16 29 H 0.00 0.07 7.45 -2.39 -0.02 0.05 16 30 H 0.01 0.70 7.29 -2.39 -0.02 0.68 16 31 H 0.03 1.40 7.86 -2.38 -0.02 1.38 16 32 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 33 H 0.05 1.73 6.43 -2.39 -0.02 1.72 16 34 H 0.06 1.99 7.87 -2.39 -0.02 1.97 16 35 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 39 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.10 1.15 4.99 -2.38 -0.01 1.14 16 42 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.12 1.22 6.08 -2.39 -0.01 1.20 16 44 H 0.09 0.49 8.14 -2.38 -0.02 0.48 16 45 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.03 0.23 8.14 -2.39 -0.02 0.21 16 47 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 51 H 0.07 1.90 7.00 -2.38 -0.02 1.88 16 52 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 53 H 0.08 2.06 6.50 -2.39 -0.02 2.05 16 54 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 Total: -1.00 -76.39 408.21 0.52 -75.87 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 0.85 Total: 9.21 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 7.61 Total: 14.21 kcal Atomic # 7 Polarization: -107.22 SS G_CDS: -8.92 Total: -116.14 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -1.05 Total: -31.32 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -76.39 0.52 -75.87 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667410336.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.570 kcal (2) G-P(sol) polarization free energy of solvation -76.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds