Wall clock time and date at job start Sat Apr 11 2020 05:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.46885 * 2 1 4 4 C 1.46493 * 120.00071 * 84.07182 * 3 2 1 5 5 C 1.52998 * 109.47204 * 90.00182 * 4 3 2 6 6 N 1.46905 * 109.47272 * 179.97438 * 5 4 3 7 7 C 1.46899 * 111.00056 * 179.97438 * 6 5 4 8 8 C 1.50695 * 109.47106 * 180.02562 * 7 6 5 9 9 O 1.21288 * 119.99817 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00031 * 180.02562 * 8 7 6 11 11 C 1.37103 * 119.99998 * 180.02562 * 10 8 7 12 12 H 1.07993 * 119.99490 * 359.97438 * 11 10 8 13 13 C 1.38942 * 119.99711 * 179.97438 * 11 10 8 14 14 N 1.31408 * 120.00655 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99949 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46945 * 59.99769 * 15 13 11 17 17 H 1.48494 * 109.47285 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47056 * 300.00167 * 15 13 11 19 19 C 1.34783 * 119.99504 * 264.07004 * 3 2 1 20 20 O 1.21285 * 119.99613 * 184.62958 * 19 3 2 21 21 C 1.50702 * 120.00054 * 4.62950 * 19 3 2 22 22 H 1.08997 * 109.47174 * 46.17168 * 21 19 3 23 23 C 1.52998 * 109.46525 * 166.16910 * 21 19 3 24 24 C 1.53001 * 109.46971 * 180.02562 * 23 21 19 25 25 C 1.53008 * 109.46932 * 299.99961 * 24 23 21 26 26 H 1.08995 * 109.46767 * 300.00010 * 25 24 23 27 27 C 1.52998 * 109.46979 * 179.97438 * 25 24 23 28 28 C 1.52997 * 109.46915 * 59.99792 * 25 24 23 29 29 C 1.52992 * 109.47518 * 300.00069 * 28 25 24 30 30 H 1.08994 * 109.47140 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47428 * 300.00248 * 1 2 3 32 32 H 1.08996 * 109.47208 * 60.00011 * 1 2 3 33 33 H 1.08996 * 109.47209 * 240.00064 * 2 1 3 34 34 H 1.08998 * 109.47178 * 119.99207 * 2 1 3 35 35 H 1.08998 * 109.47366 * 329.99587 * 4 3 2 36 36 H 1.09008 * 109.47010 * 209.99546 * 4 3 2 37 37 H 1.09001 * 109.47224 * 299.99793 * 5 4 3 38 38 H 1.08998 * 109.47445 * 59.99453 * 5 4 3 39 39 H 1.00894 * 111.00002 * 303.95106 * 6 5 4 40 40 H 1.09003 * 109.47262 * 300.00048 * 7 6 5 41 41 H 1.09004 * 109.46936 * 59.99816 * 7 6 5 42 42 H 0.97002 * 120.00107 * 359.97438 * 10 8 7 43 43 H 0.96997 * 120.00921 * 180.02562 * 14 13 11 44 44 H 1.09004 * 109.47345 * 299.99673 * 23 21 19 45 45 H 1.09004 * 109.47587 * 60.00356 * 23 21 19 46 46 H 1.08995 * 109.47403 * 59.99582 * 24 23 21 47 47 H 1.09000 * 109.47786 * 180.02562 * 24 23 21 48 48 H 1.09003 * 109.47163 * 60.00055 * 27 25 24 49 49 H 1.09004 * 109.47199 * 180.02562 * 27 25 24 50 50 H 1.08997 * 109.47398 * 300.00263 * 27 25 24 51 51 H 1.09011 * 109.47156 * 60.00180 * 28 25 24 52 52 H 1.09004 * 109.46896 * 179.97438 * 28 25 24 53 53 H 1.09005 * 109.47275 * 299.99883 * 29 28 25 54 54 H 1.09003 * 109.47521 * 180.02562 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1389 2.1156 1.2619 5 6 3.5336 1.8930 1.8502 6 7 3.6548 2.6299 3.1153 7 6 4.9840 2.4387 3.7107 8 6 5.0703 3.2071 5.0041 9 8 4.1183 3.8510 5.3916 10 7 6.2057 3.1795 5.7298 11 6 6.2840 3.8782 6.9069 12 1 5.4361 4.4509 7.2522 13 6 7.4543 3.8494 7.6552 14 7 8.4859 3.1521 7.2352 15 14 7.5614 4.8019 9.2586 16 1 6.5225 4.3081 10.1979 17 1 8.9049 4.6081 9.8608 18 1 7.3415 6.2460 8.9920 19 6 2.3566 1.9764 -1.1611 20 8 2.8395 3.0889 -1.1540 21 6 2.1347 1.2594 -2.4679 22 1 1.1359 0.8231 -2.4780 23 6 2.2690 2.2529 -3.6237 24 6 2.0432 1.5252 -4.9505 25 6 3.0854 0.4160 -5.1076 26 1 4.0843 0.8521 -5.0978 27 6 2.8592 -0.3121 -6.4341 28 6 2.9511 -0.5774 -3.9517 29 6 3.1769 0.1503 -2.6250 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 1.3867 1.7568 1.9644 36 1 1.9872 3.1795 1.0791 37 1 3.6854 0.8292 2.0329 38 1 4.2858 2.2519 1.1476 39 1 3.4549 3.6100 2.9834 40 1 5.1452 1.3786 3.9068 41 1 5.7465 2.8006 3.0209 42 1 6.9672 2.6648 5.4198 43 1 9.3028 3.1316 7.7578 44 1 1.5262 3.0428 -3.5120 45 1 3.2678 2.6892 -3.6137 46 1 1.0443 1.0891 -4.9603 47 1 2.1393 2.2327 -5.7740 48 1 2.9546 0.3954 -7.2578 49 1 3.6014 -1.1026 -6.5459 50 1 1.8603 -0.7481 -6.4435 51 1 1.9521 -1.0134 -3.9616 52 1 3.6933 -1.3678 -4.0639 53 1 4.1759 0.5863 -2.6151 54 1 3.0817 -0.5575 -1.8015 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668623643.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:14 Heat of formation + Delta-G solvation = -119.276975 kcal Electronic energy + Delta-G solvation = -29767.045617 eV Core-core repulsion = 25736.629783 eV Total energy + Delta-G solvation = -4030.415834 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.59140 -40.19571 -39.08870 -37.61040 -36.55781 -35.83103 -33.79281 -33.29577 -32.04580 -31.68492 -30.23091 -28.23174 -27.22477 -25.64940 -24.52676 -23.74425 -23.40037 -22.26969 -21.17843 -20.70387 -20.04615 -19.82892 -18.19269 -17.88768 -17.47428 -17.06728 -16.53151 -16.30255 -16.12117 -15.82925 -15.38932 -15.30875 -15.18741 -15.16057 -14.80244 -14.71864 -14.31700 -14.11695 -13.97542 -13.66557 -13.54586 -13.39708 -13.34020 -13.13481 -13.11352 -12.93969 -12.74807 -12.63867 -12.45017 -12.35727 -12.14347 -12.12901 -12.09993 -11.86236 -11.77200 -11.56305 -11.52357 -11.25443 -10.89355 -10.58568 -10.41934 -10.04455 -9.75239 -9.46680 -8.48221 -5.97689 1.39110 1.40932 1.52267 1.57613 1.89775 2.01423 2.28766 2.94379 3.18309 3.40087 3.53408 3.67576 3.74638 3.92129 4.02423 4.07223 4.15347 4.15880 4.21777 4.26994 4.38089 4.41333 4.44654 4.45499 4.49683 4.51732 4.54065 4.58354 4.69345 4.76480 4.84877 4.87373 4.92710 4.94758 4.98743 5.01490 5.05030 5.15215 5.21914 5.26707 5.31246 5.38825 5.40104 5.44576 5.45941 5.53118 5.62349 5.80979 6.03255 6.24114 6.39815 6.57184 7.09720 7.15481 7.52463 8.07593 8.68947 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021680 B = 0.001735 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.190128 B =16130.674758 C =16609.653335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.085 3.915 3 N -0.605 5.605 4 C 0.123 3.877 5 C 0.057 3.943 6 N -0.675 5.675 7 C 0.067 3.933 8 C 0.437 3.563 9 O -0.622 6.622 10 N -0.571 5.571 11 C -0.338 4.338 12 H 0.080 0.920 13 C -0.013 4.013 14 N -0.920 5.920 15 Si 0.995 3.005 16 H -0.271 1.271 17 H -0.269 1.269 18 H -0.272 1.272 19 C 0.508 3.492 20 O -0.587 6.587 21 C -0.095 4.095 22 H 0.118 0.882 23 C -0.100 4.100 24 C -0.107 4.107 25 C -0.097 4.097 26 H 0.056 0.944 27 C -0.144 4.144 28 C -0.106 4.106 29 C -0.114 4.114 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.058 0.942 37 H 0.088 0.912 38 H 0.017 0.983 39 H 0.342 0.658 40 H 0.109 0.891 41 H 0.059 0.941 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.053 0.947 45 H 0.047 0.953 46 H 0.077 0.923 47 H 0.064 0.936 48 H 0.052 0.948 49 H 0.057 0.943 50 H 0.063 0.937 51 H 0.082 0.918 52 H 0.075 0.925 53 H 0.049 0.951 54 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.608 -14.783 -27.469 34.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.036 4.036 3 N -0.337 5.337 4 C 0.000 4.000 5 C -0.073 4.073 6 N -0.307 5.307 7 C -0.066 4.066 8 C 0.225 3.775 9 O -0.509 6.509 10 N -0.208 5.208 11 C -0.467 4.467 12 H 0.098 0.902 13 C -0.212 4.212 14 N -0.560 5.560 15 Si 0.819 3.181 16 H -0.196 1.196 17 H -0.194 1.194 18 H -0.198 1.198 19 C 0.298 3.702 20 O -0.467 6.467 21 C -0.116 4.116 22 H 0.136 0.864 23 C -0.138 4.138 24 C -0.144 4.144 25 C -0.116 4.116 26 H 0.075 0.925 27 C -0.201 4.201 28 C -0.143 4.143 29 C -0.151 4.151 30 H 0.108 0.892 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.129 0.871 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.077 0.923 37 H 0.106 0.894 38 H 0.035 0.965 39 H 0.160 0.840 40 H 0.127 0.873 41 H 0.077 0.923 42 H 0.230 0.770 43 H 0.088 0.912 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.096 0.904 47 H 0.083 0.917 48 H 0.071 0.929 49 H 0.076 0.924 50 H 0.082 0.918 51 H 0.101 0.899 52 H 0.093 0.907 53 H 0.068 0.932 54 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.088 -14.327 -26.747 33.453 hybrid contribution 1.345 1.302 0.392 1.913 sum -12.742 -13.025 -26.354 32.040 Atomic orbital electron populations 1.22178 0.94809 1.03592 1.02072 1.22201 0.95487 0.80456 1.05461 1.48082 1.64607 1.15563 1.05453 1.21196 0.96670 0.97064 0.85107 1.22242 0.97061 0.99540 0.88465 1.60054 1.27752 1.16863 1.26052 1.21522 0.91137 1.01273 0.92672 1.20783 0.83151 0.85651 0.87947 1.90485 1.38639 1.48113 1.73644 1.41917 1.13569 1.44770 1.20587 1.19662 1.00346 1.27552 0.99139 0.90237 1.26074 0.94213 0.98179 1.02778 1.69664 1.04208 1.41290 1.40888 0.84957 0.77802 0.78288 0.77084 1.19572 1.19354 1.19770 1.21467 0.76242 0.85745 0.86715 1.90693 1.45506 1.22492 1.88046 1.21380 1.03024 0.97158 0.90084 0.86435 1.21327 1.01503 0.96932 0.94048 1.21574 0.99890 0.97379 0.95552 1.21183 0.98790 0.95880 0.95714 0.92518 1.21796 1.02250 1.00167 0.95934 1.21575 1.03394 0.97342 0.92030 1.21706 0.97254 0.96235 0.99913 0.89207 0.93280 0.92473 0.87105 0.89263 0.88325 0.92318 0.89398 0.96467 0.83974 0.87302 0.92331 0.76958 0.91213 0.92841 0.93457 0.90446 0.91709 0.92907 0.92364 0.91832 0.89932 0.90681 0.93185 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 10.18 71.98 0.73 -0.77 16 2 C 0.08 0.90 5.68 86.38 0.49 1.39 16 3 N -0.61 -11.46 2.47 -821.80 -2.03 -13.49 16 4 C 0.12 2.93 5.65 86.38 0.49 3.42 16 5 C 0.06 1.52 6.01 86.30 0.52 2.04 16 6 N -0.68 -23.08 6.12 -517.92 -3.17 -26.25 16 7 C 0.07 2.44 6.17 85.56 0.53 2.97 16 8 C 0.44 21.72 7.82 87.66 0.69 22.41 16 9 O -0.62 -35.73 15.78 -3.05 -0.05 -35.78 16 10 N -0.57 -30.29 5.29 -307.00 -1.62 -31.91 16 11 C -0.34 -19.64 9.68 84.04 0.81 -18.83 16 12 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 13 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 14 N -0.92 -50.41 13.05 21.66 0.28 -50.13 16 15 Si 1.00 43.59 29.55 68.60 2.03 45.62 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 17 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 19 C 0.51 11.55 6.92 87.66 0.61 12.16 16 20 O -0.59 -19.35 15.62 -3.04 -0.05 -19.40 16 21 C -0.10 -1.39 1.69 -11.54 -0.02 -1.41 16 22 H 0.12 1.15 6.92 -2.39 -0.02 1.13 16 23 C -0.10 -1.67 4.60 30.59 0.14 -1.53 16 24 C -0.11 -1.17 5.20 30.60 0.16 -1.01 16 25 C -0.10 -0.95 2.72 -10.79 -0.03 -0.98 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 C -0.14 -1.07 9.19 71.98 0.66 -0.41 16 28 C -0.11 -0.81 5.20 30.59 0.16 -0.65 16 29 C -0.11 -1.28 4.87 30.59 0.15 -1.14 16 30 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.52 7.44 -2.39 -0.02 0.50 16 33 H 0.11 0.74 3.99 -2.39 -0.01 0.73 16 34 H 0.09 0.86 8.11 -2.39 -0.02 0.85 16 35 H 0.10 2.11 8.07 -2.39 -0.02 2.09 16 36 H 0.06 1.68 7.49 -2.38 -0.02 1.66 16 37 H 0.09 2.02 8.14 -2.39 -0.02 2.01 16 38 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.34 12.71 8.43 -89.70 -0.76 11.95 16 40 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 41 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 42 H 0.40 19.93 7.90 -92.71 -0.73 19.19 16 43 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 44 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 45 H 0.05 1.02 7.95 -2.39 -0.02 1.00 16 46 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 49 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 50 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 51 H 0.08 0.39 8.14 -2.38 -0.02 0.37 16 52 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 53 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 54 H 0.09 0.74 5.45 -2.39 -0.01 0.72 16 Total: -1.00 -74.69 423.77 1.33 -73.35 By element: Atomic # 1 Polarization: 41.14 SS G_CDS: -0.60 Total: 40.53 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: 6.55 Total: 17.45 kcal Atomic # 7 Polarization: -115.23 SS G_CDS: -6.55 Total: -121.78 kcal Atomic # 8 Polarization: -55.08 SS G_CDS: -0.10 Total: -55.18 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -74.69 1.33 -73.35 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668623643.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.924 kcal (2) G-P(sol) polarization free energy of solvation -74.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds