Wall clock time and date at job start Sat Apr 11 2020 05:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42904 * 109.46727 * 2 1 4 4 C 1.42900 * 113.99424 * 180.02562 * 3 2 1 5 5 C 1.53793 * 113.60976 * 209.99752 * 4 3 2 6 6 C 1.53781 * 87.07845 * 220.01854 * 5 4 3 7 7 C 1.50701 * 113.61206 * 270.79981 * 6 5 4 8 8 O 1.21281 * 120.00144 * 358.46834 * 7 6 5 9 9 N 1.34775 * 119.99783 * 178.47107 * 7 6 5 10 10 C 1.46503 * 120.00029 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47169 * 180.02562 * 10 9 7 12 12 N 1.46905 * 109.46890 * 180.02562 * 11 10 9 13 13 C 1.46847 * 111.00121 * 294.20999 * 12 11 10 14 14 C 1.53039 * 109.52336 * 174.16315 * 13 12 11 15 15 C 1.53117 * 109.27612 * 59.18004 * 14 13 12 16 16 N 1.46503 * 109.52030 * 182.44238 * 15 14 13 17 17 C 1.36941 * 119.99773 * 274.68686 * 16 15 14 18 18 H 1.08001 * 119.99782 * 359.97438 * 17 16 15 19 19 C 1.38813 * 119.99935 * 180.02562 * 17 16 15 20 20 N 1.31620 * 119.99732 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00049 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47040 * 89.99664 * 21 19 17 23 23 H 1.48503 * 109.46798 * 209.99686 * 21 19 17 24 24 H 1.48504 * 109.47040 * 329.99583 * 21 19 17 25 25 C 1.53123 * 109.16186 * 302.34351 * 15 14 13 26 26 C 1.46848 * 110.99528 * 170.00331 * 12 11 10 27 27 C 1.53777 * 113.61474 * 112.50273 * 4 3 2 28 28 H 1.08997 * 109.47072 * 300.00104 * 1 2 3 29 29 H 1.08998 * 109.47274 * 60.00099 * 1 2 3 30 30 H 1.08998 * 109.46991 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46599 * 240.00038 * 2 1 3 32 32 H 1.08998 * 109.47274 * 119.99901 * 2 1 3 33 33 H 1.08994 * 112.90948 * 341.24383 * 4 3 2 34 34 H 1.09000 * 113.61258 * 105.46990 * 5 4 3 35 35 H 1.08997 * 113.61168 * 334.56811 * 5 4 3 36 36 H 1.09002 * 113.61228 * 139.98223 * 6 5 4 37 37 H 0.97003 * 120.00033 * 0.02562 * 9 7 6 38 38 H 1.08995 * 109.47289 * 300.00809 * 10 9 7 39 39 H 1.09005 * 109.46459 * 60.00381 * 10 9 7 40 40 H 1.08995 * 109.47589 * 300.00519 * 11 10 9 41 41 H 1.09005 * 109.47207 * 60.00732 * 11 10 9 42 42 H 1.09004 * 109.46394 * 294.18042 * 13 12 11 43 43 H 1.09001 * 109.46103 * 54.14776 * 13 12 11 44 44 H 1.09005 * 109.50058 * 299.24074 * 14 13 12 45 45 H 1.08999 * 109.49860 * 179.12349 * 14 13 12 46 46 H 1.08996 * 109.57693 * 62.28459 * 15 14 13 47 47 H 0.96996 * 120.00153 * 94.68008 * 16 15 14 48 48 H 0.97005 * 119.99587 * 179.97438 * 20 19 17 49 49 H 1.08992 * 109.50257 * 297.71458 * 25 15 14 50 50 H 1.09003 * 109.50145 * 177.59927 * 25 15 14 51 51 H 1.08999 * 109.46275 * 305.85179 * 26 12 11 52 52 H 1.08998 * 109.46624 * 65.83630 * 26 12 11 53 53 H 1.08999 * 113.61947 * 25.43012 * 27 4 3 54 54 H 1.08997 * 113.61348 * 254.52227 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.9489 2.7253 0.7039 6 6 4.9896 2.8315 -0.4232 7 6 6.2683 2.0874 -0.1363 8 8 6.4075 1.5051 0.9185 9 7 7.2572 2.0690 -1.0518 10 6 8.5005 1.3461 -0.7726 11 6 9.4489 1.4832 -1.9653 12 7 10.6954 0.7578 -1.6856 13 6 11.4288 1.3800 -0.5760 14 6 12.6419 0.5185 -0.2179 15 6 13.5491 0.3882 -1.4444 16 7 14.6825 -0.4834 -1.1247 17 6 15.7987 0.0370 -0.5259 18 1 15.8437 1.0899 -0.2898 19 6 16.8728 -0.7887 -0.2234 20 7 16.8181 -2.0718 -0.5116 21 14 18.3958 -0.0788 0.5927 22 1 18.2453 -0.1499 2.0683 23 1 19.5889 -0.8599 0.1785 24 1 18.5638 1.3378 0.1799 25 6 12.7479 -0.2177 -2.6001 26 6 11.5317 0.6652 -2.8891 27 6 4.0019 2.0465 -1.3025 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9290 0.5459 0.3219 34 1 4.3849 2.5317 1.6840 35 1 3.2304 3.5448 0.7135 36 1 5.1614 3.8526 -0.7640 37 1 7.1460 2.5351 -1.8952 38 1 8.9723 1.7645 0.1164 39 1 8.2780 0.2924 -0.6041 40 1 8.9773 1.0651 -2.8546 41 1 9.6714 2.5370 -2.1334 42 1 11.7641 2.3735 -0.8740 43 1 10.7736 1.4629 0.2912 44 1 12.3065 -0.4708 0.0935 45 1 13.1947 0.9887 0.5954 46 1 13.9169 1.3728 -1.7329 47 1 14.6421 -1.4289 -1.3370 48 1 17.5688 -2.6487 -0.3006 49 1 12.4142 -1.2185 -2.3262 50 1 13.3765 -0.2735 -3.4888 51 1 10.9513 0.2290 -3.7021 52 1 11.8667 1.6619 -3.1762 53 1 3.2979 2.6807 -1.8414 54 1 4.4807 1.3052 -1.9421 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672455481.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:27 Heat of formation + Delta-G solvation = -77.528751 kcal Electronic energy + Delta-G solvation = -29114.771338 eV Core-core repulsion = 25086.165842 eV Total energy + Delta-G solvation = -4028.605495 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.62238 -40.19152 -39.36929 -37.26283 -36.81562 -35.74641 -33.99852 -31.98402 -31.79573 -31.50662 -29.33717 -26.75381 -26.70402 -25.80017 -24.43800 -23.70988 -23.54298 -22.51918 -22.26048 -20.77551 -20.25295 -19.09454 -18.53682 -17.56880 -17.38227 -16.89903 -16.70557 -16.59743 -16.30602 -16.18872 -15.61763 -15.51184 -15.42162 -15.29309 -14.92234 -14.45520 -14.29749 -14.12762 -13.99755 -13.76079 -13.62351 -13.31484 -13.10694 -13.02186 -12.88276 -12.82892 -12.75605 -12.49512 -12.41649 -12.20929 -12.17775 -12.06814 -12.05951 -11.74852 -11.68289 -11.55536 -11.48818 -11.18221 -10.89053 -10.85304 -10.39721 -10.12634 -9.27327 -8.99626 -7.94181 -5.22490 1.45903 1.47818 1.54190 1.55917 2.01455 2.55772 2.74957 3.04087 3.38733 3.42527 3.53505 3.70568 3.77910 3.82650 3.83757 4.01392 4.07557 4.12818 4.17673 4.21383 4.34122 4.35395 4.37204 4.44565 4.48050 4.51338 4.56351 4.70415 4.75359 4.77714 4.82570 4.84072 4.86309 4.93210 4.97036 4.98656 5.01316 5.01939 5.05678 5.12706 5.17914 5.20732 5.28392 5.39038 5.43893 5.49481 5.60763 6.11229 6.17153 6.28489 6.28574 6.52953 7.22688 7.33781 8.11160 8.34256 9.29442 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.025322 B = 0.001518 C = 0.001512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.494435 B =18439.856585 C =18515.958229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.047 3.953 3 O -0.388 6.388 4 C 0.052 3.948 5 C -0.119 4.119 6 C -0.128 4.128 7 C 0.524 3.476 8 O -0.584 6.584 9 N -0.710 5.710 10 C 0.126 3.874 11 C 0.054 3.946 12 N -0.547 5.547 13 C 0.067 3.933 14 C -0.124 4.124 15 C 0.171 3.829 16 N -0.738 5.738 17 C -0.239 4.239 18 H 0.073 0.927 19 C -0.076 4.076 20 N -0.970 5.970 21 Si 0.971 3.029 22 H -0.289 1.289 23 H -0.295 1.295 24 H -0.269 1.269 25 C -0.114 4.114 26 C 0.073 3.927 27 C -0.122 4.122 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.113 0.887 36 H 0.142 0.858 37 H 0.419 0.581 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.102 0.898 41 H 0.055 0.945 42 H 0.039 0.961 43 H 0.076 0.924 44 H 0.045 0.955 45 H 0.044 0.956 46 H 0.037 0.963 47 H 0.371 0.629 48 H 0.250 0.750 49 H 0.056 0.944 50 H 0.065 0.935 51 H 0.098 0.902 52 H 0.042 0.958 53 H 0.119 0.881 54 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.186 12.036 -6.932 35.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 O -0.308 6.308 4 C -0.006 4.006 5 C -0.157 4.157 6 C -0.149 4.149 7 C 0.311 3.689 8 O -0.464 6.464 9 N -0.363 5.363 10 C 0.001 3.999 11 C -0.073 4.073 12 N -0.273 5.273 13 C -0.062 4.062 14 C -0.164 4.164 15 C 0.063 3.937 16 N -0.377 5.377 17 C -0.371 4.371 18 H 0.091 0.909 19 C -0.268 4.268 20 N -0.621 5.621 21 Si 0.800 3.200 22 H -0.217 1.217 23 H -0.221 1.221 24 H -0.194 1.194 25 C -0.153 4.153 26 C -0.055 4.055 27 C -0.160 4.160 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.131 0.869 36 H 0.160 0.840 37 H 0.256 0.744 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.120 0.880 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.094 0.906 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.055 0.945 47 H 0.203 0.797 48 H 0.059 0.941 49 H 0.075 0.925 50 H 0.083 0.917 51 H 0.116 0.884 52 H 0.060 0.940 53 H 0.137 0.863 54 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -33.177 11.437 -6.005 35.604 hybrid contribution 1.749 0.156 0.341 1.789 sum -31.428 11.593 -5.664 33.974 Atomic orbital electron populations 1.21753 0.92566 1.03290 1.02895 1.22678 0.96582 0.83348 1.00308 1.87900 1.20780 1.27366 1.94730 1.23828 0.80900 0.98171 0.97698 1.23137 0.96467 0.98278 0.97788 1.22150 0.90482 1.02098 1.00219 1.20644 0.85299 0.79904 0.83030 1.90720 1.81968 1.46595 1.27111 1.45725 1.15540 1.54167 1.20850 1.21173 0.84015 0.96618 0.98064 1.22171 0.89627 0.97753 0.97794 1.61741 1.05683 1.52818 1.07029 1.22035 0.94505 0.95232 0.94407 1.22106 0.95701 0.99365 0.99260 1.20492 0.86743 0.93224 0.93237 1.42652 1.14693 1.08036 1.72356 1.19620 0.93725 0.93672 1.30075 0.90872 1.25538 1.01689 0.96016 1.03606 1.69825 1.32499 1.04687 1.55104 0.85174 0.79165 0.77678 0.77973 1.21659 1.22143 1.19365 1.21756 0.96079 0.99609 0.97829 1.21982 0.93150 0.98593 0.91729 1.23403 0.96808 0.99633 0.96186 0.92299 0.91706 0.89586 0.92735 0.93736 0.91021 0.91765 0.86892 0.84011 0.74372 0.92904 0.92470 0.87991 0.92660 0.94292 0.90559 0.93628 0.93729 0.94497 0.79708 0.94113 0.92514 0.91665 0.88376 0.93951 0.86253 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.28 71.98 0.74 -0.72 16 2 C 0.05 0.63 6.50 71.98 0.47 1.10 16 3 O -0.39 -6.53 10.35 -148.98 -1.54 -8.07 16 4 C 0.05 0.82 3.98 31.12 0.12 0.94 16 5 C -0.12 -1.75 7.29 31.12 0.23 -1.52 16 6 C -0.13 -1.43 4.34 -11.01 -0.05 -1.48 16 7 C 0.52 9.58 7.08 87.66 0.62 10.20 16 8 O -0.58 -16.75 15.83 -3.03 -0.05 -16.80 16 9 N -0.71 -9.65 5.56 -463.05 -2.57 -12.22 16 10 C 0.13 2.35 5.60 86.38 0.48 2.83 16 11 C 0.05 0.85 5.07 86.30 0.44 1.29 16 12 N -0.55 -12.84 4.66 -896.33 -4.17 -17.01 16 13 C 0.07 1.82 5.29 86.33 0.46 2.27 16 14 C -0.12 -4.55 5.68 30.65 0.17 -4.37 16 15 C 0.17 6.83 2.84 45.07 0.13 6.96 16 16 N -0.74 -38.10 5.12 -322.55 -1.65 -39.75 16 17 C -0.24 -13.51 9.93 84.03 0.83 -12.68 16 18 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 19 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 20 N -0.97 -60.46 13.06 21.65 0.28 -60.17 16 21 Si 0.97 46.84 29.55 68.60 2.03 48.86 16 22 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 23 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 25 C -0.11 -3.67 5.57 30.65 0.17 -3.50 16 26 C 0.07 1.70 5.46 86.33 0.47 2.17 16 27 C -0.12 -1.19 7.49 31.12 0.23 -0.96 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.07 1.39 7.87 -2.39 -0.02 1.37 16 34 H 0.06 1.26 7.41 -2.39 -0.02 1.24 16 35 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.42 2.54 8.47 -92.71 -0.79 1.76 16 38 H 0.05 1.20 6.43 -2.39 -0.02 1.19 16 39 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 40 H 0.10 1.18 7.99 -2.39 -0.02 1.16 16 41 H 0.06 0.72 8.12 -2.38 -0.02 0.70 16 42 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.08 1.99 6.21 -2.39 -0.01 1.98 16 44 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 45 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.04 1.50 8.08 -2.39 -0.02 1.48 16 47 H 0.37 20.70 7.80 -92.71 -0.72 19.97 16 48 H 0.25 15.11 8.31 -92.70 -0.77 14.34 16 49 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 50 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 51 H 0.10 1.78 8.01 -2.39 -0.02 1.76 16 52 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 53 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 54 H 0.08 0.71 8.10 -2.39 -0.02 0.69 16 Total: -1.00 -74.34 426.13 -2.33 -76.67 By element: Atomic # 1 Polarization: 30.59 SS G_CDS: -0.64 Total: 29.95 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 5.99 Total: -1.45 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -8.12 Total: -129.16 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -1.59 Total: -24.87 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.86 kcal Total: -74.34 -2.33 -76.67 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672455481.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.863 kcal (2) G-P(sol) polarization free energy of solvation -74.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds