Wall clock time and date at job start Sat Apr 11 2020 05:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47849 * 110.99957 * 2 1 4 4 C 1.54913 * 104.79488 * 213.63860 * 3 2 1 5 5 C 1.55141 * 101.65309 * 37.07497 * 4 3 2 6 6 C 1.47445 * 110.99511 * 239.16099 * 2 1 3 7 7 H 1.08998 * 109.88840 * 242.65788 * 6 2 1 8 8 C 1.52999 * 109.89245 * 3.85374 * 6 2 1 9 9 C 1.52997 * 109.47233 * 183.12912 * 8 6 2 10 10 C 1.50698 * 109.46946 * 175.39573 * 9 8 6 11 11 O 1.21285 * 120.00275 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99928 * 179.97438 * 10 9 8 13 13 C 1.46919 * 120.63089 * 359.72577 * 12 10 9 14 14 C 1.53625 * 108.54732 * 126.36793 * 13 12 10 15 15 C 1.53046 * 109.24059 * 54.85381 * 14 13 12 16 16 O 1.42901 * 109.46016 * 58.53401 * 15 14 13 17 17 C 1.52995 * 109.46086 * 178.49433 * 15 14 13 18 18 N 1.46504 * 109.46860 * 305.06691 * 17 15 14 19 19 C 1.36944 * 119.99692 * 179.97438 * 18 17 15 20 20 H 1.07994 * 120.00283 * 0.02562 * 19 18 17 21 21 C 1.38819 * 119.99651 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00077 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 119.99756 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47320 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47165 * 119.99609 * 23 21 19 26 26 H 1.48501 * 109.47178 * 239.99909 * 23 21 19 27 27 C 1.53045 * 109.53648 * 298.51586 * 15 14 13 28 28 C 1.46928 * 120.62996 * 180.02562 * 12 10 9 29 29 H 1.09000 * 109.47238 * 62.05865 * 1 2 3 30 30 H 1.08996 * 109.47489 * 182.06564 * 1 2 3 31 31 H 1.09004 * 109.46471 * 302.06028 * 1 2 3 32 32 H 1.08998 * 110.37726 * 332.47008 * 3 2 1 33 33 H 1.09003 * 110.37040 * 94.81061 * 3 2 1 34 34 H 1.09003 * 110.98632 * 155.16242 * 4 3 2 35 35 H 1.09002 * 110.99095 * 278.98248 * 4 3 2 36 36 H 1.08994 * 110.70704 * 205.96407 * 5 4 3 37 37 H 1.09000 * 110.85418 * 82.79600 * 5 4 3 38 38 H 1.08997 * 109.46588 * 303.13193 * 8 6 2 39 39 H 1.08994 * 109.46967 * 63.12512 * 8 6 2 40 40 H 1.08992 * 109.47237 * 295.40139 * 9 8 6 41 41 H 1.08999 * 109.47248 * 55.39926 * 9 8 6 42 42 H 1.09007 * 109.58710 * 246.20449 * 13 12 10 43 43 H 1.08999 * 109.58789 * 6.62435 * 13 12 10 44 44 H 1.09000 * 109.62886 * 294.86597 * 14 13 12 45 45 H 1.08994 * 109.45936 * 174.73721 * 14 13 12 46 46 H 0.96702 * 113.99746 * 59.92752 * 16 15 14 47 47 H 1.09002 * 109.47306 * 65.06320 * 17 15 14 48 48 H 1.09001 * 109.47172 * 185.07162 * 17 15 14 49 49 H 0.97000 * 120.00500 * 0.02562 * 18 17 15 50 50 H 0.96993 * 120.00029 * 179.97438 * 22 21 19 51 51 H 1.08995 * 109.49361 * 301.40805 * 27 15 14 52 52 H 1.09002 * 109.49111 * 181.31602 * 27 15 14 53 53 H 1.09006 * 109.58782 * 353.36674 * 28 12 10 54 54 H 1.08998 * 109.59078 * 113.79940 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3047 1.3027 -0.8297 5 6 2.9158 0.2823 -1.9316 6 6 1.9973 -0.7057 -1.1819 7 1 2.5696 -1.5784 -0.8676 8 6 0.8436 -1.1354 -2.0904 9 6 1.3959 -1.9338 -3.2730 10 6 0.2526 -2.4530 -4.1062 11 8 -0.8913 -2.2081 -3.7861 12 7 0.5013 -3.1886 -5.2078 13 6 1.8817 -3.4875 -5.6125 14 6 2.0237 -5.0081 -5.7788 15 6 0.9596 -5.5099 -6.7576 16 8 1.1163 -4.8455 -8.0130 17 6 1.1203 -7.0184 -6.9560 18 7 2.4914 -7.3117 -7.3807 19 6 2.8721 -8.6051 -7.6203 20 1 2.1616 -9.4089 -7.4965 21 6 4.1715 -8.8830 -8.0222 22 7 5.0373 -7.9033 -8.1736 23 14 4.6906 -10.6472 -8.3497 24 1 3.5398 -11.5546 -8.1094 25 1 5.1386 -10.7779 -9.7594 26 1 5.8062 -11.0119 -7.4399 27 6 -0.4329 -5.2151 -6.1951 28 6 -0.6028 -3.7012 -6.0306 29 1 -0.3634 0.4815 -0.9079 30 1 -0.3634 -1.0269 0.0370 31 1 -0.3632 0.5455 0.8710 32 1 1.2889 2.0593 -0.4723 33 1 2.2148 1.7038 1.0183 34 1 3.5494 2.2721 -1.2640 35 1 4.1302 0.9281 -0.2244 36 1 3.7999 -0.2278 -2.3139 37 1 2.3751 0.7726 -2.7412 38 1 0.1485 -1.7565 -1.5256 39 1 0.3235 -0.2517 -2.4598 40 1 2.0271 -1.2886 -3.8838 41 1 1.9851 -2.7724 -2.9018 42 1 2.1008 -2.9916 -6.5581 43 1 2.5716 -3.1365 -4.8450 44 1 1.8893 -5.4962 -4.8136 45 1 3.0148 -5.2396 -6.1688 46 1 1.9777 -4.9882 -8.4287 47 1 0.9129 -7.5325 -6.0174 48 1 0.4223 -7.3609 -7.7199 49 1 3.1298 -6.5898 -7.4916 50 1 5.9453 -8.0976 -8.4541 51 1 -0.5441 -5.7014 -5.2260 52 1 -1.1901 -5.5937 -6.8817 53 1 -1.5528 -3.4914 -5.5391 54 1 -0.5819 -3.2225 -7.0096 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674080195.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:56 Heat of formation + Delta-G solvation = -93.398743 kcal Electronic energy + Delta-G solvation = -30773.087935 eV Core-core repulsion = 26743.794265 eV Total energy + Delta-G solvation = -4029.293670 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.52411 -40.45786 -39.59684 -36.79088 -35.78652 -34.47521 -33.46967 -33.06399 -32.46955 -31.74467 -29.38302 -28.07771 -26.52800 -25.84390 -24.77517 -24.43668 -23.11171 -22.12907 -21.40224 -20.38601 -19.92966 -19.44392 -18.19505 -17.40431 -17.27793 -16.74815 -16.71667 -16.60465 -16.40085 -15.83531 -15.67810 -15.47147 -15.14732 -14.99528 -14.69827 -14.52565 -14.47405 -14.19933 -14.04537 -13.63428 -13.54549 -13.49852 -13.19915 -12.99105 -12.81963 -12.74022 -12.52372 -12.40869 -12.27935 -12.21523 -12.19815 -12.15833 -12.04249 -11.98196 -11.91474 -11.55705 -11.46896 -11.30862 -10.98692 -10.90025 -10.67640 -9.63765 -9.23871 -9.02217 -7.97397 -5.25218 1.47506 1.48845 1.57702 1.61449 2.00228 2.54556 3.05363 3.25734 3.40102 3.45364 3.65376 3.71426 3.76188 3.80771 3.90226 3.93830 4.03741 4.13110 4.19495 4.23852 4.33241 4.35877 4.44778 4.48580 4.51761 4.56981 4.60305 4.65649 4.67024 4.74923 4.76834 4.80829 4.82757 4.89815 4.96148 4.98746 5.00383 5.05859 5.07847 5.13007 5.17718 5.21563 5.26321 5.32950 5.44090 5.49528 5.53939 6.06316 6.09977 6.25275 6.42681 6.75357 7.15278 7.33433 8.03660 8.29977 9.25382 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015938 B = 0.002219 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.405877 B =12613.639773 C =13667.605018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.544 5.544 3 C 0.036 3.964 4 C -0.127 4.127 5 C -0.139 4.139 6 C 0.071 3.929 7 H 0.087 0.913 8 C -0.108 4.108 9 C -0.132 4.132 10 C 0.510 3.490 11 O -0.587 6.587 12 N -0.607 5.607 13 C 0.117 3.883 14 C -0.150 4.150 15 C 0.138 3.862 16 O -0.562 6.562 17 C 0.128 3.872 18 N -0.735 5.735 19 C -0.247 4.247 20 H 0.069 0.931 21 C -0.066 4.066 22 N -0.962 5.962 23 Si 0.968 3.032 24 H -0.272 1.272 25 H -0.293 1.293 26 H -0.292 1.292 27 C -0.111 4.111 28 C 0.122 3.878 29 H 0.028 0.972 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.080 0.920 43 H 0.112 0.888 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.382 0.618 47 H 0.025 0.975 48 H 0.019 0.981 49 H 0.378 0.622 50 H 0.253 0.747 51 H 0.079 0.921 52 H 0.085 0.915 53 H 0.082 0.918 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.361 19.422 13.194 24.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.268 5.268 3 C -0.092 4.092 4 C -0.165 4.165 5 C -0.177 4.177 6 C -0.037 4.037 7 H 0.105 0.895 8 C -0.146 4.146 9 C -0.172 4.172 10 C 0.300 3.700 11 O -0.468 6.468 12 N -0.339 5.339 13 C -0.005 4.005 14 C -0.189 4.189 15 C 0.097 3.903 16 O -0.369 6.369 17 C 0.001 3.999 18 N -0.380 5.380 19 C -0.378 4.378 20 H 0.087 0.913 21 C -0.259 4.259 22 N -0.612 5.612 23 Si 0.797 3.203 24 H -0.196 1.196 25 H -0.221 1.221 26 H -0.219 1.219 27 C -0.149 4.149 28 C 0.000 4.000 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.098 0.902 43 H 0.130 0.870 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.231 0.769 47 H 0.043 0.957 48 H 0.037 0.963 49 H 0.213 0.787 50 H 0.062 0.938 51 H 0.098 0.902 52 H 0.103 0.897 53 H 0.100 0.900 54 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.457 19.304 13.945 24.674 hybrid contribution 0.726 -0.957 -1.331 1.794 sum -5.730 18.347 12.613 22.990 Atomic orbital electron populations 1.22546 0.87798 1.02100 1.00552 1.63767 1.08290 1.15074 1.39628 1.23151 0.96113 0.88924 1.00982 1.22699 0.97107 0.99956 0.96752 1.22927 0.99973 0.96891 0.97909 1.22522 0.94803 0.97802 0.88538 0.89464 1.21820 0.97841 0.99574 0.95407 1.21716 0.96310 1.02279 0.96915 1.21286 0.91048 0.77260 0.80404 1.90652 1.24885 1.59993 1.71299 1.48243 1.08070 1.51862 1.25767 1.21892 0.81628 0.94609 1.02354 1.22499 0.99799 0.96413 1.00205 1.21218 0.95595 0.89568 0.83940 1.86378 1.41200 1.73984 1.35377 1.21446 0.86659 0.94913 0.96914 1.42424 1.08330 1.05395 1.81872 1.19567 0.95043 0.86171 1.37061 0.91277 1.25435 0.96542 1.00977 1.02994 1.69753 1.04706 1.31661 1.55070 0.85162 0.77804 0.80409 0.76890 1.19620 1.22050 1.21926 1.21812 0.95203 0.96515 1.01411 1.21403 0.90427 0.93122 0.95093 0.95308 0.91609 0.91129 0.93684 0.89919 0.89667 0.90429 0.89225 0.91287 0.91959 0.92412 0.86675 0.86992 0.90193 0.87023 0.91035 0.90647 0.76886 0.95709 0.96300 0.78725 0.93845 0.90200 0.89652 0.89964 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.26 127.69 1.05 1.36 16 2 N -0.54 -9.21 5.44 -886.49 -4.83 -14.04 16 3 C 0.04 0.49 6.73 86.77 0.58 1.07 16 4 C -0.13 -1.42 7.08 31.98 0.23 -1.19 16 5 C -0.14 -1.64 5.60 31.78 0.18 -1.46 16 6 C 0.07 1.09 3.48 45.26 0.16 1.25 16 7 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 8 C -0.11 -1.91 2.67 30.59 0.08 -1.83 16 9 C -0.13 -2.15 3.80 29.85 0.11 -2.04 16 10 C 0.51 12.34 7.70 87.66 0.67 13.02 16 11 O -0.59 -18.56 15.34 -3.05 -0.05 -18.60 16 12 N -0.61 -14.20 2.97 -817.99 -2.43 -16.62 16 13 C 0.12 2.43 6.13 86.51 0.53 2.96 16 14 C -0.15 -4.03 4.89 30.82 0.15 -3.88 16 15 C 0.14 4.10 0.71 -10.77 -0.01 4.09 16 16 O -0.56 -17.24 11.70 -148.98 -1.74 -18.99 16 17 C 0.13 4.85 5.43 86.38 0.47 5.32 16 18 N -0.74 -34.30 5.07 -343.44 -1.74 -36.04 16 19 C -0.25 -13.19 9.99 84.03 0.84 -12.35 16 20 H 0.07 3.65 7.83 -2.91 -0.02 3.62 16 21 C -0.07 -3.64 5.50 84.86 0.47 -3.18 16 22 N -0.96 -55.12 13.06 21.65 0.28 -54.84 16 23 Si 0.97 44.64 29.55 68.60 2.03 46.67 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 26 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 27 C -0.11 -2.89 5.11 30.68 0.16 -2.73 16 28 C 0.12 3.08 6.19 86.37 0.53 3.62 16 29 H 0.03 0.51 6.51 -2.39 -0.02 0.49 16 30 H 0.07 1.19 6.72 -2.39 -0.02 1.17 16 31 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.04 0.61 7.80 -2.39 -0.02 0.59 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 36 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.07 0.84 7.78 -2.39 -0.02 0.82 16 38 H 0.06 1.33 6.24 -2.39 -0.01 1.32 16 39 H 0.06 1.16 6.83 -2.39 -0.02 1.14 16 40 H 0.12 1.40 7.34 -2.39 -0.02 1.38 16 41 H 0.11 1.52 7.70 -2.39 -0.02 1.50 16 42 H 0.08 1.65 7.81 -2.38 -0.02 1.63 16 43 H 0.11 1.67 5.93 -2.39 -0.01 1.66 16 44 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.08 2.33 6.53 -2.39 -0.02 2.31 16 46 H 0.38 11.79 8.19 -74.06 -0.61 11.19 16 47 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.38 17.91 5.55 -92.71 -0.51 17.40 16 50 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 51 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 52 H 0.08 2.15 8.14 -2.39 -0.02 2.14 16 53 H 0.08 2.19 7.01 -2.38 -0.02 2.17 16 54 H 0.07 1.87 7.81 -2.39 -0.02 1.85 16 Total: -1.00 -65.68 405.17 -2.49 -68.17 By element: Atomic # 1 Polarization: 40.49 SS G_CDS: -0.23 Total: 40.26 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 6.21 Total: 4.03 kcal Atomic # 7 Polarization: -112.83 SS G_CDS: -8.71 Total: -121.54 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -1.79 Total: -37.59 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -65.68 -2.49 -68.17 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674080195.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.226 kcal (2) G-P(sol) polarization free energy of solvation -65.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds