Wall clock time and date at job start Sat Apr 11 2020 05:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99714 * 2 1 4 4 C 1.53005 * 109.46981 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46898 * 65.00007 * 4 3 2 6 6 C 1.36939 * 120.00269 * 270.00017 * 5 4 3 7 7 H 1.07995 * 119.99914 * 141.45410 * 6 5 4 8 8 C 1.38814 * 119.99563 * 321.45981 * 6 5 4 9 9 N 1.31619 * 120.00067 * 338.83174 * 8 6 5 10 10 Si 1.86805 * 119.99733 * 158.84196 * 8 6 5 11 11 H 1.48499 * 109.46946 * 59.99286 * 10 8 6 12 12 H 1.48494 * 109.47021 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.46924 * 299.99632 * 10 8 6 14 14 C 1.46499 * 119.99981 * 90.00085 * 5 4 3 15 15 C 1.52996 * 109.47272 * 264.70977 * 14 5 4 16 16 N 1.46502 * 109.47179 * 179.97438 * 15 14 5 17 17 C 1.34774 * 119.99778 * 180.27288 * 16 15 14 18 18 O 1.21281 * 120.00387 * 359.72849 * 17 16 15 19 19 C 1.50705 * 120.00175 * 179.72654 * 17 16 15 20 20 H 1.09005 * 109.77129 * 59.23288 * 19 17 16 21 21 C 1.53634 * 109.78218 * 298.41391 * 19 17 16 22 22 C 1.52824 * 110.64246 * 183.27303 * 21 19 17 23 23 C 1.53637 * 110.61299 * 53.86726 * 22 21 19 24 24 C 1.52368 * 107.60180 * 303.59287 * 23 22 21 25 25 H 1.08999 * 111.44345 * 300.93878 * 24 23 22 26 26 C 1.53921 * 113.26267 * 174.91999 * 24 23 22 27 27 C 1.55333 * 102.08611 * 204.92901 * 26 24 23 28 28 C 1.54799 * 104.98795 * 22.19182 * 27 26 24 29 29 N 1.45527 * 109.78595 * 180.02562 * 19 17 16 30 30 H 1.09006 * 109.46770 * 299.99904 * 1 2 3 31 31 H 1.08996 * 109.47274 * 59.99739 * 1 2 3 32 32 H 1.09001 * 109.47312 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47413 * 60.00448 * 3 2 1 34 34 H 1.08997 * 109.47377 * 300.00078 * 3 2 1 35 35 H 1.09001 * 109.46931 * 305.00606 * 4 3 2 36 36 H 1.08995 * 109.47382 * 185.00125 * 4 3 2 37 37 H 0.97002 * 119.99271 * 180.02562 * 9 8 6 38 38 H 1.09000 * 109.47166 * 144.70523 * 14 5 4 39 39 H 1.09000 * 109.46710 * 24.71000 * 14 5 4 40 40 H 1.09005 * 109.47218 * 60.00108 * 15 14 5 41 41 H 1.09000 * 109.46902 * 300.00075 * 15 14 5 42 42 H 0.96993 * 120.00323 * 0.02562 * 16 15 14 43 43 H 1.08998 * 109.24064 * 303.57460 * 21 19 17 44 44 H 1.09005 * 109.24769 * 62.97058 * 21 19 17 45 45 H 1.08998 * 109.24878 * 293.57867 * 22 21 19 46 46 H 1.08996 * 109.22034 * 174.13905 * 22 21 19 47 47 H 1.08995 * 109.83176 * 184.06685 * 23 22 21 48 48 H 1.09005 * 109.82838 * 63.11355 * 23 22 21 49 49 H 1.08994 * 110.91234 * 86.72962 * 26 24 23 50 50 H 1.09004 * 110.93439 * 323.13617 * 26 24 23 51 51 H 1.08996 * 110.33195 * 263.31318 * 27 26 24 52 52 H 1.08998 * 110.33562 * 141.07054 * 27 26 24 53 53 H 1.09006 * 110.15466 * 244.51855 * 28 27 26 54 54 H 1.09002 * 110.15154 * 122.77678 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0978 -0.7975 -1.3346 7 1 3.8084 -1.3107 -2.2396 8 6 4.5925 -1.5177 -0.2559 9 7 5.3194 -0.9143 0.6606 10 14 4.2269 -3.3434 -0.1054 11 1 4.7674 -4.0558 -1.2910 12 1 4.8648 -3.8762 1.1251 13 1 2.7582 -3.5496 -0.0312 14 6 4.2883 1.3998 -2.4130 15 6 3.0609 1.4871 -3.3223 16 7 3.3723 2.3234 -4.4841 17 6 2.4330 2.5476 -5.4242 18 8 1.3314 2.0530 -5.3109 19 6 2.7513 3.4130 -6.6163 20 1 3.5893 2.9868 -7.1680 21 6 3.1038 4.8333 -6.1484 22 6 3.3515 5.7492 -7.3465 23 6 2.1571 5.7116 -8.3121 24 6 1.9364 4.2591 -8.7157 25 1 2.8213 3.8397 -9.1946 26 6 0.6865 4.0543 -9.5903 27 6 0.3332 2.5679 -9.3097 28 6 0.9967 2.2489 -7.9480 29 7 1.5861 3.5054 -7.4831 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8507 0.5685 0.8427 36 1 3.9785 2.1765 0.0902 37 1 5.6653 -1.4178 1.4141 38 1 5.1188 0.9597 -2.9649 39 1 4.5640 2.3997 -2.0779 40 1 2.2304 1.9273 -2.7704 41 1 2.7852 0.4872 -3.6573 42 1 4.2534 2.7187 -4.5750 43 1 2.2798 5.2313 -5.5562 44 1 4.0026 4.7961 -5.5328 45 1 4.2483 5.4199 -7.8712 46 1 3.4963 6.7703 -6.9936 47 1 2.3765 6.3116 -9.1952 48 1 1.2669 6.0964 -7.8143 49 1 0.9197 4.2065 -10.6440 50 1 -0.1225 4.7128 -9.2737 51 1 0.7434 1.9273 -10.0904 52 1 -0.7474 2.4414 -9.2435 53 1 1.7729 1.4943 -8.0760 54 1 0.2471 1.9004 -7.2375 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677321675.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:37 Heat of formation + Delta-G solvation = -77.446624 kcal Electronic energy + Delta-G solvation = -31184.482564 eV Core-core repulsion = 27155.880629 eV Total energy + Delta-G solvation = -4028.601934 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.63451 -39.82011 -38.91256 -37.40806 -36.11900 -35.52860 -33.49307 -33.19458 -31.13927 -30.23116 -29.32180 -28.10349 -27.18728 -25.95421 -24.84834 -23.26352 -22.56154 -22.20197 -22.05245 -21.23222 -20.71586 -18.72268 -17.94508 -17.57766 -17.28038 -16.78722 -16.59875 -16.50280 -16.38021 -16.11416 -15.72556 -15.61396 -15.45073 -15.05683 -15.01326 -14.58642 -14.37258 -14.12241 -13.74050 -13.72318 -13.59033 -13.43615 -13.21103 -13.02080 -12.71844 -12.61451 -12.49421 -12.42106 -12.35958 -12.19268 -12.07140 -11.97280 -11.84633 -11.71915 -11.62121 -11.56636 -11.45372 -11.25764 -10.63447 -10.44657 -10.39105 -10.03706 -9.28525 -8.54833 -7.80194 -5.40680 1.44347 1.49086 1.56471 1.61420 2.07530 2.56324 2.95505 3.16500 3.32674 3.51729 3.66337 3.74157 3.82253 3.99493 4.02005 4.10312 4.19755 4.22562 4.27327 4.31742 4.36061 4.39105 4.47722 4.49073 4.54647 4.66176 4.68419 4.70161 4.71949 4.78085 4.87976 4.88891 4.93994 4.96027 4.98534 5.07629 5.08973 5.10368 5.18278 5.21274 5.22964 5.31708 5.31863 5.50177 5.51068 5.69550 5.76967 6.07013 6.11632 6.44506 6.62033 6.62521 7.21398 7.28761 7.87960 8.37719 9.17416 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015978 B = 0.002551 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.980790 B =10974.912725 C =11137.063019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.051 3.949 4 C 0.143 3.857 5 N -0.586 5.586 6 C -0.248 4.248 7 H 0.039 0.961 8 C -0.019 4.019 9 N -0.914 5.914 10 Si 0.945 3.055 11 H -0.278 1.278 12 H -0.290 1.290 13 H -0.288 1.288 14 C 0.144 3.856 15 C 0.123 3.877 16 N -0.711 5.711 17 C 0.507 3.493 18 O -0.575 6.575 19 C 0.080 3.920 20 H 0.077 0.923 21 C -0.102 4.102 22 C -0.114 4.114 23 C -0.104 4.104 24 C 0.064 3.936 25 H 0.060 0.940 26 C -0.108 4.108 27 C -0.126 4.126 28 C 0.055 3.945 29 N -0.533 5.533 30 H 0.051 0.949 31 H 0.034 0.966 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.033 0.967 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.251 0.749 38 H 0.049 0.951 39 H 0.068 0.932 40 H 0.042 0.958 41 H 0.027 0.973 42 H 0.413 0.587 43 H 0.057 0.943 44 H 0.089 0.911 45 H 0.073 0.927 46 H 0.083 0.917 47 H 0.090 0.910 48 H 0.063 0.937 49 H 0.094 0.906 50 H 0.073 0.927 51 H 0.077 0.923 52 H 0.071 0.929 53 H 0.019 0.981 54 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.408 16.376 -18.491 25.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.315 6.315 3 C -0.028 4.028 4 C 0.017 3.983 5 N -0.306 5.306 6 C -0.378 4.378 7 H 0.057 0.943 8 C -0.216 4.216 9 N -0.558 5.558 10 Si 0.774 3.226 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.215 1.215 14 C 0.017 3.983 15 C -0.004 4.004 16 N -0.364 5.364 17 C 0.294 3.706 18 O -0.453 6.453 19 C -0.032 4.032 20 H 0.094 0.906 21 C -0.140 4.140 22 C -0.152 4.152 23 C -0.141 4.141 24 C -0.043 4.043 25 H 0.078 0.922 26 C -0.146 4.146 27 C -0.164 4.164 28 C -0.072 4.072 29 N -0.259 5.259 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.046 0.954 42 H 0.250 0.750 43 H 0.076 0.924 44 H 0.107 0.893 45 H 0.092 0.908 46 H 0.101 0.899 47 H 0.108 0.892 48 H 0.081 0.919 49 H 0.112 0.888 50 H 0.092 0.908 51 H 0.096 0.904 52 H 0.090 0.910 53 H 0.038 0.962 54 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.306 16.000 -17.911 24.596 hybrid contribution 0.258 -1.714 0.262 1.753 sum -5.048 14.286 -17.649 23.261 Atomic orbital electron populations 1.22791 0.81823 1.02519 0.99812 1.88133 1.19356 1.28828 1.95152 1.23358 0.97214 0.83939 0.98249 1.21017 0.89232 0.96671 0.91423 1.43658 1.76023 1.02406 1.08532 1.18804 1.35287 0.83207 1.00534 0.94288 1.25548 0.96457 1.00608 0.99023 1.70064 1.34708 1.36850 1.14194 0.85714 0.77668 0.82344 0.76873 1.20347 1.21628 1.21462 1.21018 0.93281 0.95320 0.88631 1.21833 0.99885 0.92576 0.86079 1.45891 1.16255 1.51551 1.22746 1.21155 0.84169 0.80788 0.84518 1.90665 1.24286 1.52256 1.78136 1.21540 0.93015 0.97061 0.91590 0.90561 1.21612 1.02060 0.91010 0.99311 1.21572 0.98462 0.99942 0.95192 1.21547 0.98722 0.94069 0.99782 1.22786 0.97525 0.95220 0.88770 0.92203 1.22371 0.96973 0.95349 0.99931 1.22663 1.01085 0.97659 0.95000 1.22430 0.97920 0.90224 0.96669 1.62615 1.28832 1.18432 1.16008 0.93071 0.94784 0.90020 0.93272 0.94870 0.91468 0.91983 0.94030 0.93302 0.91360 0.93932 0.95446 0.74989 0.92373 0.89260 0.90794 0.89873 0.89171 0.91851 0.88796 0.90805 0.90402 0.91015 0.96222 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 11.01 113.37 1.25 2.20 16 2 O -0.40 -18.17 10.18 -148.98 -1.52 -19.68 16 3 C 0.05 2.09 6.28 71.98 0.45 2.54 16 4 C 0.14 6.56 5.76 86.38 0.50 7.06 16 5 N -0.59 -28.48 2.41 -702.00 -1.69 -30.17 16 6 C -0.25 -13.78 8.95 84.03 0.75 -13.03 16 7 H 0.04 2.26 7.91 -2.91 -0.02 2.24 16 8 C -0.02 -1.06 4.95 84.86 0.42 -0.64 16 9 N -0.91 -53.15 11.53 21.65 0.25 -52.91 16 10 Si 0.94 46.71 29.60 68.60 2.03 48.74 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 12 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 13 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 14 C 0.14 5.61 5.83 86.38 0.50 6.11 16 15 C 0.12 4.63 5.97 86.38 0.52 5.14 16 16 N -0.71 -20.60 5.48 -463.05 -2.54 -23.14 16 17 C 0.51 15.84 6.99 87.66 0.61 16.45 16 18 O -0.57 -23.45 14.23 -3.03 -0.04 -23.49 16 19 C 0.08 1.80 2.40 44.64 0.11 1.91 16 20 H 0.08 1.51 8.05 -2.38 -0.02 1.49 16 21 C -0.10 -1.71 5.27 30.75 0.16 -1.55 16 22 C -0.11 -1.34 5.94 30.75 0.18 -1.16 16 23 C -0.10 -1.31 5.67 30.60 0.17 -1.14 16 24 C 0.06 1.03 2.63 44.68 0.12 1.14 16 25 H 0.06 0.90 8.06 -2.39 -0.02 0.88 16 26 C -0.11 -1.55 6.61 31.71 0.21 -1.34 16 27 C -0.13 -2.27 6.99 32.01 0.22 -2.05 16 28 C 0.06 1.44 5.54 87.02 0.48 1.92 16 29 N -0.53 -12.55 4.29 -845.02 -3.63 -16.18 16 30 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.03 1.14 8.14 -2.39 -0.02 1.13 16 32 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.03 1.32 6.48 -2.39 -0.02 1.31 16 35 H 0.07 3.62 5.58 -2.39 -0.01 3.61 16 36 H 0.06 2.52 7.86 -2.39 -0.02 2.50 16 37 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 38 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 39 H 0.07 2.28 7.83 -2.39 -0.02 2.26 16 40 H 0.04 1.74 6.48 -2.38 -0.02 1.72 16 41 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.41 8.87 8.08 -92.71 -0.75 8.12 16 43 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.09 1.18 7.78 -2.38 -0.02 1.16 16 45 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 49 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.07 1.11 8.10 -2.38 -0.02 1.09 16 51 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 52 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 53 H 0.02 0.53 8.04 -2.38 -0.02 0.51 16 54 H 0.06 1.91 6.87 -2.39 -0.02 1.89 16 Total: -1.00 -72.67 415.18 -0.36 -73.03 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.11 Total: 20.22 kcal Atomic # 6 Polarization: 16.92 SS G_CDS: 6.66 Total: 23.58 kcal Atomic # 7 Polarization: -114.79 SS G_CDS: -7.61 Total: -122.40 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: -1.56 Total: -43.17 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -72.67 -0.36 -73.03 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677321675.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.418 kcal (2) G-P(sol) polarization free energy of solvation -72.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds