Wall clock time and date at job start Sat Apr 11 2020 05:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42893 * 114.00210 * 2 1 4 4 C 1.53004 * 109.47078 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46837 * 65.00058 * 4 3 2 6 6 C 1.36938 * 120.00134 * 267.97290 * 5 4 3 7 7 H 1.08001 * 120.00274 * 143.74067 * 6 5 4 8 8 C 1.38816 * 120.00001 * 323.73984 * 6 5 4 9 9 N 1.31617 * 119.99794 * 336.45510 * 8 6 5 10 10 Si 1.86800 * 120.00192 * 156.44822 * 8 6 5 11 11 H 1.48503 * 109.46707 * 90.00182 * 10 8 6 12 12 H 1.48494 * 109.47510 * 210.00038 * 10 8 6 13 13 H 1.48503 * 109.47013 * 330.00894 * 10 8 6 14 14 C 1.46495 * 120.00162 * 87.97566 * 5 4 3 15 15 C 1.52995 * 109.47482 * 89.99769 * 14 5 4 16 16 N 1.46505 * 109.47532 * 180.02562 * 15 14 5 17 17 C 1.34767 * 120.00117 * 180.02562 * 16 15 14 18 18 O 1.21282 * 120.00398 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00027 * 180.02562 * 17 16 15 20 20 H 1.09005 * 109.77311 * 292.76624 * 19 17 16 21 21 C 1.53635 * 109.78631 * 53.59196 * 19 17 16 22 22 C 1.52830 * 110.64613 * 62.45566 * 21 19 17 23 23 C 1.53635 * 110.60114 * 53.87498 * 22 21 19 24 24 C 1.52366 * 107.60173 * 303.58446 * 23 22 21 25 25 H 1.09001 * 110.92800 * 301.27424 * 24 23 22 26 26 C 1.53920 * 113.27279 * 174.94186 * 24 23 22 27 27 C 1.55331 * 102.08569 * 204.91038 * 26 24 23 28 28 C 1.54797 * 104.98768 * 22.20207 * 27 26 24 29 29 N 1.45532 * 109.78478 * 172.00495 * 19 17 16 30 30 H 1.08996 * 109.46847 * 59.99737 * 1 2 3 31 31 H 1.08996 * 109.47507 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46777 * 300.00374 * 1 2 3 33 33 H 1.09001 * 109.47557 * 60.00286 * 3 2 1 34 34 H 1.08998 * 109.47261 * 300.00281 * 3 2 1 35 35 H 1.08998 * 109.47300 * 305.00132 * 4 3 2 36 36 H 1.08997 * 109.47294 * 184.99834 * 4 3 2 37 37 H 0.97004 * 119.99920 * 179.97438 * 9 8 6 38 38 H 1.09004 * 109.47400 * 329.99349 * 14 5 4 39 39 H 1.09004 * 109.47078 * 209.99690 * 14 5 4 40 40 H 1.09001 * 109.47459 * 59.99833 * 15 14 5 41 41 H 1.08996 * 109.47054 * 300.00266 * 15 14 5 42 42 H 0.96998 * 119.99895 * 359.97438 * 16 15 14 43 43 H 1.08998 * 109.23747 * 302.16059 * 21 19 17 44 44 H 1.08998 * 109.24361 * 182.76094 * 21 19 17 45 45 H 1.08998 * 109.25317 * 293.58427 * 22 21 19 46 46 H 1.08995 * 109.24716 * 174.15968 * 22 21 19 47 47 H 1.08998 * 109.83607 * 63.11418 * 23 22 21 48 48 H 1.09009 * 109.83235 * 184.06085 * 23 22 21 49 49 H 1.09004 * 110.91218 * 323.11332 * 26 24 23 50 50 H 1.09006 * 110.90730 * 86.71791 * 26 24 23 51 51 H 1.08989 * 110.33758 * 263.32217 * 27 26 24 52 52 H 1.09000 * 110.33559 * 141.07633 * 27 26 24 53 53 H 1.09003 * 110.15265 * 244.51767 * 28 27 26 54 54 H 1.09000 * 110.21376 * 122.79903 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2528 6 6 4.1366 -0.7937 -1.3246 7 1 3.8833 -1.3203 -2.2330 8 6 4.6254 -1.4937 -0.2300 9 7 5.3527 -0.8746 0.6756 10 14 4.2506 -3.3140 -0.0421 11 1 5.3117 -4.1093 -0.7105 12 1 4.2045 -3.6636 1.4004 13 1 2.9378 -3.6162 -0.6670 14 6 4.2437 1.3968 -2.4280 15 6 5.7117 1.8277 -2.4238 16 7 5.9796 2.6607 -3.5988 17 6 7.2153 3.1575 -3.8051 18 8 8.1055 2.9153 -3.0179 19 6 7.4907 4.0149 -5.0135 20 1 7.4073 3.4137 -5.9189 21 6 6.4877 5.1775 -5.0656 22 6 6.6439 6.0792 -3.8416 23 6 8.1005 6.5457 -3.6961 24 6 8.9780 5.3019 -3.6283 25 1 8.6902 4.6676 -2.7900 26 6 10.4837 5.6205 -3.6053 27 6 11.1008 4.3168 -4.1817 28 6 9.9555 3.6521 -4.9835 29 7 8.8275 4.5824 -4.9204 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6888 1.8464 0.8900 34 1 1.6887 1.8463 -0.8899 35 1 3.8516 0.5680 0.8409 36 1 3.9787 2.1763 0.0889 37 1 5.6940 -1.3636 1.4407 38 1 3.6056 2.2801 -2.4007 39 1 4.0352 0.8258 -3.3329 40 1 6.3498 0.9444 -2.4512 41 1 5.9202 2.3985 -1.5190 42 1 5.2677 2.8542 -4.2286 43 1 5.4744 4.7769 -5.0896 44 1 6.6633 5.7632 -5.9680 45 1 6.3527 5.5265 -2.9485 46 1 5.9972 6.9496 -3.9517 47 1 8.3828 7.1510 -4.5574 48 1 8.2128 7.1278 -2.7813 49 1 10.7106 6.4740 -4.2442 50 1 10.8285 5.7966 -2.5863 51 1 11.4268 3.6624 -3.3734 52 1 11.9369 4.5523 -4.8401 53 1 9.6826 2.6997 -4.5291 54 1 10.2595 3.5002 -6.0191 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677321677.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:45 Heat of formation + Delta-G solvation = -72.122201 kcal Electronic energy + Delta-G solvation = -31497.446863 eV Core-core repulsion = 27469.075814 eV Total energy + Delta-G solvation = -4028.371050 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.08642 -39.37927 -38.81856 -37.39525 -36.19113 -35.44447 -33.50682 -33.21369 -31.16116 -30.14526 -29.23077 -28.12129 -27.11895 -25.79426 -24.69939 -23.69097 -22.65691 -22.01662 -21.88439 -21.78817 -20.47051 -18.70154 -17.75685 -17.42241 -17.18953 -16.80593 -16.74062 -16.50203 -16.44164 -16.09306 -15.73712 -15.63350 -15.43552 -14.96394 -14.90527 -14.67947 -14.47332 -14.13213 -13.77355 -13.59304 -13.47375 -13.27309 -13.21347 -12.93185 -12.74403 -12.62681 -12.46383 -12.39729 -12.28601 -12.18360 -12.09409 -11.98482 -11.82244 -11.73795 -11.54118 -11.42574 -11.29479 -11.23591 -11.06846 -10.48648 -10.33649 -10.00254 -9.19243 -8.59246 -7.82080 -5.37442 1.43588 1.47307 1.57295 1.62342 2.23349 2.56481 2.93673 3.20034 3.32994 3.60046 3.67847 3.72395 3.87557 3.98602 4.07960 4.12980 4.21628 4.25035 4.34546 4.37527 4.45505 4.49841 4.54349 4.58997 4.62232 4.67571 4.73098 4.74679 4.78620 4.83246 4.86813 4.90293 4.93023 4.96598 5.02235 5.04475 5.08491 5.10509 5.15954 5.18365 5.22340 5.31372 5.36474 5.48666 5.54663 5.69255 5.77086 5.96696 6.13790 6.43674 6.63298 6.65730 7.18871 7.31578 7.87638 8.36546 9.16856 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015050 B = 0.002821 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.078167 B = 9924.398313 C =10992.218789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.057 3.943 4 C 0.142 3.858 5 N -0.585 5.585 6 C -0.246 4.246 7 H 0.052 0.948 8 C -0.027 4.027 9 N -0.919 5.919 10 Si 0.948 3.052 11 H -0.289 1.289 12 H -0.295 1.295 13 H -0.272 1.272 14 C 0.145 3.855 15 C 0.125 3.875 16 N -0.708 5.708 17 C 0.477 3.523 18 O -0.583 6.583 19 C 0.070 3.930 20 H 0.124 0.876 21 C -0.097 4.097 22 C -0.124 4.124 23 C -0.101 4.101 24 C 0.038 3.962 25 H 0.053 0.947 26 C -0.108 4.108 27 C -0.122 4.122 28 C 0.043 3.957 29 N -0.500 5.500 30 H 0.046 0.954 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.247 0.753 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.020 0.980 41 H 0.027 0.973 42 H 0.413 0.587 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.031 0.969 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.066 0.934 49 H 0.089 0.911 50 H 0.065 0.935 51 H 0.048 0.952 52 H 0.089 0.911 53 H 0.021 0.979 54 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.307 17.059 -13.029 21.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C -0.021 4.021 4 C 0.016 3.984 5 N -0.305 5.305 6 C -0.376 4.376 7 H 0.070 0.930 8 C -0.224 4.224 9 N -0.564 5.564 10 Si 0.777 3.223 11 H -0.216 1.216 12 H -0.222 1.222 13 H -0.197 1.197 14 C 0.018 3.982 15 C -0.002 4.002 16 N -0.361 5.361 17 C 0.264 3.736 18 O -0.464 6.464 19 C -0.043 4.043 20 H 0.142 0.858 21 C -0.134 4.134 22 C -0.162 4.162 23 C -0.139 4.139 24 C -0.070 4.070 25 H 0.071 0.929 26 C -0.146 4.146 27 C -0.160 4.160 28 C -0.085 4.085 29 N -0.223 5.223 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.039 0.961 41 H 0.046 0.954 42 H 0.250 0.750 43 H 0.107 0.893 44 H 0.120 0.880 45 H 0.050 0.950 46 H 0.107 0.893 47 H 0.104 0.896 48 H 0.084 0.916 49 H 0.108 0.892 50 H 0.084 0.916 51 H 0.067 0.933 52 H 0.108 0.892 53 H 0.039 0.961 54 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.502 16.945 -12.772 21.226 hybrid contribution -0.373 -1.933 1.332 2.377 sum 0.128 15.012 -11.440 18.875 Atomic orbital electron populations 1.22826 0.81448 1.02629 1.00168 1.88137 1.19719 1.28727 1.95216 1.23176 0.96092 0.84077 0.98800 1.20920 0.90156 0.96057 0.91267 1.43830 1.75394 1.02714 1.08577 1.19003 1.35509 0.83313 0.99820 0.92989 1.25597 0.96628 1.00783 0.99395 1.70146 1.34849 1.37233 1.14138 0.85597 0.78155 0.82146 0.76394 1.21620 1.22158 1.19712 1.21154 0.90950 0.94776 0.91280 1.21776 0.99960 0.91948 0.86564 1.46130 1.12011 1.51159 1.26810 1.22667 0.82109 0.80133 0.88726 1.90635 1.45747 1.60766 1.49291 1.21974 0.91819 0.95752 0.94764 0.85830 1.21623 0.97144 0.94555 1.00112 1.21622 0.97194 1.00093 0.97290 1.21526 0.94002 0.95828 1.02503 1.23031 0.96500 0.95834 0.91609 0.92898 1.22310 0.93476 0.97852 1.01001 1.22539 0.97777 0.96569 0.99102 1.22571 0.91161 0.94265 1.00536 1.63303 1.00225 1.25883 1.32878 0.93570 0.90060 0.93549 0.93367 0.93555 0.91950 0.93378 0.94363 0.91125 0.92490 0.96148 0.95418 0.74960 0.89272 0.88020 0.94968 0.89257 0.89582 0.91580 0.89202 0.91626 0.93341 0.89223 0.96068 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.40 -16.81 10.27 -148.98 -1.53 -18.34 16 3 C 0.06 2.16 6.28 71.98 0.45 2.62 16 4 C 0.14 6.54 5.69 86.38 0.49 7.03 16 5 N -0.58 -28.14 2.40 -702.01 -1.69 -29.83 16 6 C -0.25 -13.50 9.06 84.03 0.76 -12.74 16 7 H 0.05 2.87 7.93 -2.91 -0.02 2.85 16 8 C -0.03 -1.54 4.89 84.86 0.41 -1.13 16 9 N -0.92 -55.50 11.55 21.65 0.25 -55.25 16 10 Si 0.95 46.86 29.61 68.60 2.03 48.89 16 11 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 12 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 13 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 14 C 0.15 5.54 5.79 86.38 0.50 6.04 16 15 C 0.12 5.04 6.00 86.38 0.52 5.56 16 16 N -0.71 -21.07 5.42 -463.07 -2.51 -23.58 16 17 C 0.48 15.09 5.59 87.66 0.49 15.58 16 18 O -0.58 -24.45 11.98 -3.04 -0.04 -24.49 16 19 C 0.07 1.56 3.07 44.64 0.14 1.70 16 20 H 0.12 2.32 8.14 -2.38 -0.02 2.30 16 21 C -0.10 -1.51 5.44 30.75 0.17 -1.35 16 22 C -0.12 -2.28 5.66 30.75 0.17 -2.11 16 23 C -0.10 -1.96 5.68 30.60 0.17 -1.79 16 24 C 0.04 0.96 2.23 44.68 0.10 1.06 16 25 H 0.05 1.85 5.08 -2.39 -0.01 1.84 16 26 C -0.11 -2.36 6.61 31.71 0.21 -2.15 16 27 C -0.12 -2.80 6.99 32.01 0.22 -2.57 16 28 C 0.04 1.09 6.38 87.02 0.56 1.64 16 29 N -0.50 -11.87 4.60 -845.11 -3.89 -15.76 16 30 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.08 2.28 8.14 -2.39 -0.02 2.27 16 32 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 35 H 0.06 3.43 5.53 -2.39 -0.01 3.42 16 36 H 0.05 2.06 8.09 -2.39 -0.02 2.04 16 37 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 38 H 0.07 2.23 8.07 -2.38 -0.02 2.21 16 39 H 0.06 2.08 8.04 -2.38 -0.02 2.06 16 40 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.41 8.79 7.51 -92.71 -0.70 8.10 16 43 H 0.09 1.07 7.19 -2.39 -0.02 1.05 16 44 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.03 0.77 7.61 -2.39 -0.02 0.75 16 46 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 49 H 0.09 1.60 8.10 -2.39 -0.02 1.58 16 50 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 51 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 52 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 53 H 0.02 0.69 6.32 -2.39 -0.02 0.68 16 54 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -74.19 411.59 -0.59 -74.78 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.17 Total: 24.17 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: 6.62 Total: 19.41 kcal Atomic # 7 Polarization: -116.59 SS G_CDS: -7.84 Total: -124.42 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -1.57 Total: -42.83 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -74.19 -0.59 -74.78 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677321677.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.656 kcal (2) G-P(sol) polarization free energy of solvation -74.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds