Wall clock time and date at job start Sat Apr 11 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21286 * 119.99687 * 2 1 4 4 N 1.34773 * 120.00301 * 180.02562 * 2 1 3 5 5 C 1.46494 * 120.00124 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.46979 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.47471 * 60.00132 * 6 5 4 8 8 C 1.53002 * 109.47331 * 299.99772 * 6 5 4 9 9 C 1.50705 * 109.47061 * 179.97438 * 6 5 4 10 10 O 1.21277 * 120.00101 * 0.02562 * 9 6 5 11 11 N 1.34783 * 120.00007 * 179.97438 * 9 6 5 12 12 C 1.46494 * 119.99924 * 180.02562 * 11 9 6 13 13 C 1.53000 * 109.46979 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.46864 * 180.02562 * 13 12 11 15 15 C 1.53005 * 109.47182 * 174.95105 * 14 13 12 16 16 H 1.09004 * 109.86842 * 306.25666 * 15 14 13 17 17 C 1.54320 * 109.88495 * 67.42725 * 15 14 13 18 18 C 1.55157 * 102.94424 * 141.61326 * 17 15 14 19 19 C 1.54910 * 101.57682 * 324.50092 * 18 17 15 20 20 N 1.47021 * 109.88621 * 185.24196 * 15 14 13 21 21 C 1.36938 * 125.64942 * 61.59878 * 20 15 14 22 22 H 1.07998 * 120.00060 * 14.67980 * 21 20 15 23 23 C 1.38813 * 119.99799 * 194.68303 * 21 20 15 24 24 N 1.31615 * 120.00204 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99788 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47125 * 90.00217 * 25 23 21 27 27 H 1.48502 * 109.47342 * 209.99703 * 25 23 21 28 28 H 1.48496 * 109.47624 * 330.00181 * 25 23 21 29 29 H 1.09002 * 109.46822 * 240.00068 * 1 2 3 30 30 H 1.09005 * 109.47254 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.47233 * 119.99605 * 1 2 3 32 32 H 0.97004 * 119.99423 * 359.97438 * 4 2 1 33 33 H 1.08999 * 109.47128 * 60.00080 * 5 4 2 34 34 H 1.09004 * 109.47550 * 299.99792 * 5 4 2 35 35 H 1.08996 * 109.47435 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.46822 * 300.00042 * 7 6 5 37 37 H 1.08996 * 109.46661 * 59.99692 * 7 6 5 38 38 H 1.08999 * 109.47264 * 300.00222 * 8 6 5 39 39 H 1.09002 * 109.46839 * 60.00034 * 8 6 5 40 40 H 1.08995 * 109.47004 * 179.97438 * 8 6 5 41 41 H 0.97000 * 119.99708 * 0.02562 * 11 9 6 42 42 H 1.08999 * 109.47128 * 60.00483 * 12 11 9 43 43 H 1.09006 * 109.47274 * 300.00655 * 12 11 9 44 44 H 1.08995 * 109.47421 * 299.99742 * 13 12 11 45 45 H 1.08999 * 109.47128 * 60.00077 * 13 12 11 46 46 H 1.08999 * 109.47172 * 294.94513 * 14 13 12 47 47 H 1.08991 * 109.47504 * 54.94750 * 14 13 12 48 48 H 1.08998 * 110.72231 * 259.98020 * 17 15 14 49 49 H 1.09006 * 110.71977 * 23.24756 * 17 15 14 50 50 H 1.08999 * 111.00577 * 206.42475 * 18 17 15 51 51 H 1.09000 * 111.03671 * 82.58787 * 18 17 15 52 52 H 1.08997 * 110.36739 * 278.16569 * 19 18 17 53 53 H 1.09000 * 110.36152 * 155.84777 * 19 18 17 54 54 H 0.96997 * 120.00534 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 6 4.1559 -2.6096 -0.0023 7 6 3.6455 -3.3301 -1.2518 8 6 3.6464 -3.3317 1.2467 9 6 5.6629 -2.6096 -0.0035 10 8 6.2693 -1.5593 -0.0029 11 7 6.3369 -3.7768 -0.0041 12 6 7.8018 -3.7768 -0.0047 13 6 8.3118 -5.2192 -0.0060 14 6 9.8418 -5.2192 -0.0060 15 6 10.3519 -6.6562 0.1197 16 1 9.9038 -7.1335 0.9912 17 6 10.0018 -7.4509 -1.1560 18 6 11.2578 -8.3364 -1.3696 19 6 12.3895 -7.3896 -0.8977 20 7 11.8166 -6.6576 0.2466 21 6 12.5306 -6.0748 1.2594 22 1 12.0302 -5.7694 2.1665 23 6 13.8974 -5.8763 1.1202 24 7 14.5072 -6.2489 0.0149 25 14 14.8711 -5.0806 2.5014 26 1 15.3691 -6.1314 3.4251 27 1 16.0228 -4.3370 1.9307 28 1 13.9956 -4.1409 3.2468 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3634 1.0277 0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 1.6959 -2.0072 -0.0005 33 1 4.0095 -0.6535 0.8889 34 1 4.0089 -0.6531 -0.8911 35 1 4.0084 -4.3578 -1.2524 36 1 2.5555 -3.3301 -1.2514 37 1 4.0085 -2.8156 -2.1415 38 1 4.0101 -2.8185 2.1369 39 1 2.5564 -3.3317 1.2472 40 1 4.0094 -4.3594 1.2456 41 1 5.8518 -4.6168 -0.0042 42 1 8.1655 -3.2633 0.8853 43 1 8.1648 -3.2625 -0.8947 44 1 7.9489 -5.7338 0.8837 45 1 7.9481 -5.7324 -0.8962 46 1 10.2051 -4.7849 -0.9374 47 1 10.2052 -4.6298 0.8357 48 1 9.1177 -8.0680 -0.9955 49 1 9.8556 -6.7785 -2.0014 50 1 11.3787 -8.5959 -2.4213 51 1 11.2147 -9.2326 -0.7507 52 1 12.6610 -6.6966 -1.6939 53 1 13.2593 -7.9659 -0.5823 54 1 15.4622 -6.1099 -0.0826 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690912631.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:37 Heat of formation + Delta-G solvation = -103.575726 kcal Electronic energy + Delta-G solvation = -29627.462420 eV Core-core repulsion = 25597.727443 eV Total energy + Delta-G solvation = -4029.734977 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.56471 -40.42573 -39.47538 -37.53681 -36.69310 -34.79329 -34.35430 -33.40647 -31.24527 -30.80200 -29.44381 -28.29806 -27.11667 -26.67137 -25.83446 -23.57931 -22.67676 -21.86129 -21.66293 -20.88307 -20.26833 -18.72430 -18.29703 -17.63553 -17.02900 -16.98427 -16.81411 -16.64981 -16.51765 -16.06802 -15.75510 -15.62419 -15.00053 -14.85156 -14.76561 -14.35165 -14.29299 -13.91318 -13.69716 -13.56740 -13.33858 -13.29871 -13.22157 -13.09291 -13.01364 -13.00761 -12.79133 -12.75710 -12.64889 -12.23796 -12.13152 -12.01652 -11.99189 -11.82196 -11.66541 -11.53733 -11.30443 -11.15310 -11.06093 -10.77348 -10.64854 -10.21624 -10.11458 -8.77089 -7.85913 -5.21175 1.42909 1.44503 1.52759 1.55541 1.64051 1.90320 2.44528 2.49516 3.32560 3.37726 3.66268 3.72651 3.74789 3.94713 3.95394 4.01235 4.03758 4.18028 4.26762 4.36268 4.44205 4.52829 4.53653 4.63164 4.66376 4.71148 4.74188 4.78849 4.83534 4.84455 4.86333 4.86954 4.91596 5.00611 5.05407 5.12981 5.14803 5.22824 5.25488 5.28697 5.34784 5.38653 5.40945 5.50845 5.53528 5.68847 5.72132 5.80770 6.28023 6.49965 6.57283 7.13052 7.20481 7.27871 7.83165 8.50029 9.25630 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018943 B = 0.001826 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.725712 B =15329.203797 C =16337.205272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.499 3.501 3 O -0.609 6.609 4 N -0.709 5.709 5 C 0.148 3.852 6 C -0.080 4.080 7 C -0.140 4.140 8 C -0.141 4.141 9 C 0.515 3.485 10 O -0.592 6.592 11 N -0.705 5.705 12 C 0.123 3.877 13 C -0.105 4.105 14 C -0.114 4.114 15 C 0.152 3.848 16 H 0.038 0.962 17 C -0.110 4.110 18 C -0.137 4.137 19 C 0.174 3.826 20 N -0.619 5.619 21 C -0.229 4.229 22 H 0.076 0.924 23 C -0.066 4.066 24 N -0.949 5.949 25 Si 0.969 3.031 26 H -0.284 1.284 27 H -0.297 1.297 28 H -0.272 1.272 29 H 0.116 0.884 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.420 0.580 33 H 0.044 0.956 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.048 0.952 38 H 0.047 0.953 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.419 0.581 42 H 0.045 0.955 43 H 0.050 0.950 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.039 0.961 47 H 0.034 0.966 48 H 0.100 0.900 49 H 0.070 0.930 50 H 0.080 0.920 51 H 0.064 0.936 52 H -0.010 1.010 53 H 0.028 0.972 54 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.147 -1.650 -2.364 34.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.288 3.712 3 O -0.490 6.490 4 N -0.364 5.364 5 C 0.022 3.978 6 C -0.084 4.084 7 C -0.198 4.198 8 C -0.198 4.198 9 C 0.302 3.698 10 O -0.472 6.472 11 N -0.358 5.358 12 C -0.001 4.001 13 C -0.144 4.144 14 C -0.154 4.154 15 C 0.046 3.954 16 H 0.055 0.945 17 C -0.148 4.148 18 C -0.176 4.176 19 C 0.049 3.951 20 N -0.344 5.344 21 C -0.359 4.359 22 H 0.093 0.907 23 C -0.260 4.260 24 N -0.598 5.598 25 Si 0.798 3.202 26 H -0.211 1.211 27 H -0.224 1.224 28 H -0.197 1.197 29 H 0.135 0.865 30 H 0.102 0.898 31 H 0.135 0.865 32 H 0.260 0.740 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.116 0.884 40 H 0.107 0.893 41 H 0.257 0.743 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.102 0.898 45 H 0.112 0.888 46 H 0.058 0.942 47 H 0.052 0.948 48 H 0.118 0.882 49 H 0.089 0.911 50 H 0.099 0.901 51 H 0.083 0.917 52 H 0.008 0.992 53 H 0.047 0.953 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -33.077 -0.155 -2.310 33.158 hybrid contribution 1.574 0.454 0.669 1.770 sum -31.503 0.299 -1.641 31.547 Atomic orbital electron populations 1.21933 0.87295 1.06065 1.06888 1.21810 0.92614 0.82679 0.74102 1.90746 1.72500 1.33804 1.51975 1.45892 1.06007 1.09554 1.74966 1.20798 0.80754 0.95243 1.00979 1.20918 0.89807 0.96271 1.01395 1.21954 1.03432 1.00897 0.93477 1.21955 1.03450 1.00864 0.93541 1.20987 0.90716 0.83335 0.74782 1.90743 1.71587 1.33402 1.51496 1.45809 1.06868 1.08922 1.74178 1.21255 0.79658 0.98397 1.00777 1.21619 0.94239 0.94205 1.04296 1.21839 0.94951 0.98480 1.00154 1.21237 0.83544 0.93884 0.96744 0.94454 1.22586 0.97820 0.97886 0.96484 1.22882 0.95975 0.97776 1.00947 1.21206 0.94208 0.91623 0.88090 1.44864 1.01641 1.62799 1.25082 1.19285 0.90662 1.31377 0.94576 0.90656 1.25664 0.98367 1.02366 0.99562 1.70144 1.08780 1.53471 1.27426 0.85212 0.78153 0.78219 0.78611 1.21134 1.22374 1.19672 0.86542 0.89796 0.86494 0.74012 0.93784 0.93676 0.89200 0.88450 0.93239 0.93385 0.88415 0.89262 0.74288 0.93668 0.93202 0.89796 0.88839 0.94204 0.94753 0.88205 0.91126 0.90148 0.91700 0.99238 0.95320 0.94555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 10.32 71.24 0.74 -0.09 16 2 C 0.50 8.16 7.94 87.66 0.70 8.85 16 3 O -0.61 -18.09 17.09 -3.05 -0.05 -18.14 16 4 N -0.71 -8.00 4.96 -463.07 -2.30 -10.29 16 5 C 0.15 2.83 3.85 86.38 0.33 3.16 16 6 C -0.08 -1.02 0.63 -52.92 -0.03 -1.05 16 7 C -0.14 -0.88 8.20 71.98 0.59 -0.29 16 8 C -0.14 -0.95 8.20 71.98 0.59 -0.35 16 9 C 0.52 11.42 6.48 87.66 0.57 11.99 16 10 O -0.59 -20.27 15.98 -3.02 -0.05 -20.31 16 11 N -0.71 -12.36 5.34 -463.06 -2.47 -14.83 16 12 C 0.12 3.00 5.67 86.38 0.49 3.49 16 13 C -0.11 -2.30 5.10 30.59 0.16 -2.14 16 14 C -0.11 -3.89 4.72 30.60 0.14 -3.74 16 15 C 0.15 5.67 3.16 45.34 0.14 5.82 16 16 H 0.04 1.36 8.14 -2.38 -0.02 1.35 16 17 C -0.11 -3.22 5.71 31.78 0.18 -3.04 16 18 C -0.14 -4.78 7.09 31.99 0.23 -4.55 16 19 C 0.17 8.58 5.41 86.86 0.47 9.05 16 20 N -0.62 -31.25 3.13 -668.27 -2.09 -33.34 16 21 C -0.23 -12.88 9.71 84.03 0.82 -12.07 16 22 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 23 C -0.07 -3.86 5.47 84.86 0.46 -3.39 16 24 N -0.95 -58.27 10.58 21.65 0.23 -58.04 16 25 Si 0.97 46.99 29.55 68.60 2.03 49.01 16 26 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 27 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 28 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 29 H 0.12 -0.03 8.14 -2.39 -0.02 -0.05 16 30 H 0.08 0.64 8.12 -2.38 -0.02 0.62 16 31 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.42 0.89 6.16 -92.71 -0.57 0.32 16 33 H 0.04 1.13 8.10 -2.39 -0.02 1.11 16 34 H 0.04 1.15 8.10 -2.39 -0.02 1.13 16 35 H 0.09 0.22 7.56 -2.39 -0.02 0.20 16 36 H 0.10 0.06 6.86 -2.39 -0.02 0.04 16 37 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.10 0.09 6.86 -2.39 -0.02 0.07 16 40 H 0.09 0.27 7.56 -2.39 -0.02 0.25 16 41 H 0.42 3.85 7.31 -92.71 -0.68 3.17 16 42 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 44 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 45 H 0.09 1.58 7.65 -2.39 -0.02 1.56 16 46 H 0.04 1.49 8.02 -2.39 -0.02 1.47 16 47 H 0.03 1.36 7.84 -2.39 -0.02 1.34 16 48 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 49 H 0.07 1.97 7.76 -2.38 -0.02 1.95 16 50 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 51 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 52 H -0.01 -0.57 8.06 -2.39 -0.02 -0.59 16 53 H 0.03 1.61 6.93 -2.39 -0.02 1.59 16 54 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -88.95 424.20 1.49 -87.46 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -0.37 Total: 6.87 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 6.57 Total: 11.61 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -6.63 Total: -116.50 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -0.10 Total: -38.45 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.01 kcal Total: -88.95 1.49 -87.46 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690912631.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.115 kcal (2) G-P(sol) polarization free energy of solvation -88.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds