Wall clock time and date at job start Sat Apr 11 2020 05:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46907 * 110.99821 * 2 1 4 4 C 1.46902 * 111.00025 * 123.94882 * 2 1 3 5 5 C 1.52999 * 109.46819 * 68.22081 * 4 2 1 6 6 C 1.50701 * 115.55102 * 55.70831 * 5 4 2 7 7 O 1.21281 * 120.00076 * 246.95964 * 6 5 4 8 8 N 1.34780 * 120.00006 * 66.95278 * 6 5 4 9 9 C 1.46924 * 120.63170 * 355.88840 * 8 6 5 10 10 C 1.53187 * 108.77591 * 126.41226 * 9 8 6 11 11 C 1.53046 * 109.31294 * 54.63549 * 10 9 8 12 12 C 1.53041 * 109.52655 * 298.64091 * 11 10 9 13 13 H 1.08998 * 109.49814 * 301.40739 * 12 11 10 14 14 N 1.46504 * 109.49820 * 181.30898 * 12 11 10 15 15 C 1.36939 * 119.99759 * 300.00251 * 14 12 11 16 16 H 1.07993 * 119.99710 * 323.37347 * 15 14 12 17 17 C 1.38808 * 119.99804 * 143.37356 * 15 14 12 18 18 N 1.31618 * 120.00296 * 338.97353 * 17 15 14 19 19 Si 1.86798 * 119.99926 * 158.97037 * 17 15 14 20 20 H 1.48504 * 109.47260 * 90.00190 * 19 17 15 21 21 H 1.48501 * 109.47264 * 210.00250 * 19 17 15 22 22 H 1.48499 * 109.47180 * 330.00297 * 19 17 15 23 23 C 1.46491 * 120.00033 * 120.00117 * 14 12 11 24 24 C 1.53002 * 109.47409 * 84.85895 * 23 14 12 25 25 O 1.42895 * 109.46970 * 64.99934 * 24 23 14 26 26 C 1.46930 * 120.62863 * 175.90813 * 8 6 5 27 27 C 1.53006 * 117.50047 * 201.37549 * 5 4 2 28 28 C 1.52996 * 117.50164 * 270.03747 * 5 4 2 29 29 H 1.09001 * 109.46986 * 292.63877 * 1 2 3 30 30 H 1.08996 * 109.47201 * 52.64272 * 1 2 3 31 31 H 1.09000 * 109.46864 * 172.64232 * 1 2 3 32 32 H 1.08999 * 109.47180 * 183.95068 * 3 2 1 33 33 H 1.08997 * 109.46592 * 303.95278 * 3 2 1 34 34 H 1.09004 * 109.46855 * 63.95199 * 3 2 1 35 35 H 1.08998 * 109.47605 * 308.22117 * 4 2 1 36 36 H 1.09003 * 109.47200 * 188.21648 * 4 2 1 37 37 H 1.08997 * 109.58301 * 6.62825 * 9 8 6 38 38 H 1.08997 * 109.70181 * 246.27001 * 9 8 6 39 39 H 1.09008 * 109.50156 * 294.68703 * 10 9 8 40 40 H 1.08998 * 109.49833 * 174.58785 * 10 9 8 41 41 H 1.08997 * 109.45982 * 58.65829 * 11 10 9 42 42 H 1.09000 * 109.45697 * 178.63001 * 11 10 9 43 43 H 0.96997 * 120.00047 * 179.97438 * 18 17 15 44 44 H 1.09002 * 109.47599 * 204.85907 * 23 14 12 45 45 H 1.09010 * 109.47545 * 324.85966 * 23 14 12 46 46 H 1.09003 * 109.47517 * 184.99909 * 24 23 14 47 47 H 1.09002 * 109.46895 * 305.00141 * 24 23 14 48 48 H 0.96700 * 114.00308 * 180.02562 * 25 24 23 49 49 H 1.08998 * 109.58844 * 353.38039 * 26 8 6 50 50 H 1.09006 * 109.58548 * 113.65765 * 26 8 6 51 51 H 1.08998 * 117.49910 * 215.00388 * 27 5 4 52 52 H 1.08995 * 117.49256 * 0.02562 * 27 5 4 53 53 H 1.09003 * 117.49628 * 359.97116 * 28 5 4 54 54 H 1.08998 * 117.50463 * 144.97327 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1377 5 6 1.6786 -2.2501 0.9436 6 6 2.1705 -2.8566 -0.3453 7 8 1.3758 -3.2295 -1.1822 8 7 3.4936 -2.9847 -0.5680 9 6 4.4694 -2.4567 0.3952 10 6 5.4365 -3.5796 0.7831 11 6 6.0601 -4.1705 -0.4835 12 6 4.9598 -4.7638 -1.3665 13 1 4.4216 -5.5314 -0.8105 14 7 5.5604 -5.3570 -2.5639 15 6 6.2887 -4.5774 -3.4224 16 1 5.9877 -3.5580 -3.6133 17 6 7.4138 -5.0976 -4.0472 18 7 8.0237 -6.1468 -3.5378 19 14 8.0623 -4.3085 -5.6113 20 1 9.0489 -3.2549 -5.2619 21 1 8.7186 -5.3420 -6.4518 22 1 6.9351 -3.7013 -6.3635 23 6 5.3819 -6.7840 -2.8427 24 6 4.0565 -6.9984 -3.5764 25 8 4.1135 -6.3673 -4.8571 26 6 3.9875 -3.6546 -1.7788 27 6 1.6763 -3.1406 2.1878 28 6 0.3553 -2.7697 1.5090 29 1 -0.3633 0.3956 0.9485 30 1 -0.3633 0.6235 -0.8168 31 1 -0.3633 -1.0192 -0.1316 32 1 3.0828 1.3434 -0.0708 33 1 1.5898 1.9163 -0.8524 34 1 1.7043 1.8724 0.9233 35 1 1.5322 -0.4129 2.0590 36 1 3.0753 -0.6299 1.1987 37 1 3.9490 -2.0995 1.2838 38 1 5.0253 -1.6357 -0.0576 39 1 4.8938 -4.3585 1.3188 40 1 6.2227 -3.1779 1.4223 41 1 6.5819 -3.3859 -1.0315 42 1 6.7670 -4.9534 -0.2089 43 1 8.8097 -6.5105 -3.9746 44 1 6.2033 -7.1381 -3.4656 45 1 5.3718 -7.3391 -1.9046 46 1 3.8811 -8.0665 -3.7052 47 1 3.2442 -6.5645 -2.9933 48 1 3.3049 -6.4625 -5.3789 49 1 3.1492 -4.0876 -2.3246 50 1 4.5017 -2.9318 -2.4124 51 1 2.0306 -4.1651 2.0741 52 1 1.9002 -2.6689 3.1446 53 1 -0.2893 -2.0543 2.0198 54 1 -0.1597 -3.5500 0.9487 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691532702.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:06 Heat of formation + Delta-G solvation = -42.954894 kcal Electronic energy + Delta-G solvation = -32521.065303 eV Core-core repulsion = 28493.959043 eV Total energy + Delta-G solvation = -4027.106261 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.58042 -39.47772 -38.41273 -37.69907 -36.58441 -36.24295 -33.71721 -32.88116 -31.31576 -29.34353 -28.70801 -28.43709 -26.76515 -25.95020 -24.08750 -23.46285 -23.29660 -22.87671 -22.09292 -21.09468 -19.47526 -18.32841 -18.24628 -17.76067 -17.12415 -16.80076 -16.54145 -16.17962 -16.06436 -15.85010 -15.72446 -15.39644 -15.21293 -15.04233 -14.68221 -14.49513 -14.39433 -14.05321 -13.71646 -13.64770 -13.33708 -13.28539 -13.09120 -12.92040 -12.89298 -12.78513 -12.65572 -12.57342 -12.46222 -12.38791 -12.25959 -11.95803 -11.71651 -11.58038 -11.53557 -11.38145 -11.24818 -10.99911 -10.74720 -10.58658 -10.41173 -9.57430 -9.22612 -8.46452 -7.75850 -5.31435 1.43727 1.48141 1.58212 1.72867 2.04964 2.57295 2.65244 3.11984 3.35711 3.52533 3.59812 3.73180 3.76762 3.86190 4.04380 4.09574 4.14426 4.19101 4.30139 4.33351 4.43202 4.45853 4.50112 4.54282 4.57523 4.62441 4.66249 4.73794 4.77062 4.77858 4.80914 4.87664 4.89458 4.96869 4.98573 5.02743 5.03250 5.03723 5.08998 5.12356 5.22342 5.25991 5.48616 5.60828 5.66589 5.72954 5.81400 6.10424 6.14489 6.53680 6.61717 7.12652 7.25445 7.32465 7.93192 8.44009 9.22958 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014280 B = 0.003482 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.352036 B = 8040.343497 C = 8313.532044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.574 5.574 3 C 0.028 3.972 4 C 0.097 3.903 5 C -0.160 4.160 6 C 0.559 3.441 7 O -0.594 6.594 8 N -0.599 5.599 9 C 0.109 3.891 10 C -0.121 4.121 11 C -0.111 4.111 12 C 0.169 3.831 13 H 0.049 0.951 14 N -0.582 5.582 15 C -0.227 4.227 16 H 0.042 0.958 17 C -0.028 4.028 18 N -0.918 5.918 19 Si 0.944 3.056 20 H -0.283 1.283 21 H -0.294 1.294 22 H -0.284 1.284 23 C 0.142 3.858 24 C 0.067 3.933 25 O -0.573 6.573 26 C 0.126 3.874 27 C -0.134 4.134 28 C -0.147 4.147 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.044 0.956 42 H 0.041 0.959 43 H 0.247 0.753 44 H 0.071 0.929 45 H 0.045 0.955 46 H 0.049 0.951 47 H 0.024 0.976 48 H 0.374 0.626 49 H 0.049 0.951 50 H 0.043 0.957 51 H 0.092 0.908 52 H 0.139 0.861 53 H 0.123 0.877 54 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.892 10.300 16.827 23.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.298 5.298 3 C -0.119 4.119 4 C -0.031 4.031 5 C -0.164 4.164 6 C 0.349 3.651 7 O -0.475 6.475 8 N -0.331 5.331 9 C -0.012 4.012 10 C -0.160 4.160 11 C -0.151 4.151 12 C 0.062 3.938 13 H 0.067 0.933 14 N -0.302 5.302 15 C -0.358 4.358 16 H 0.060 0.940 17 C -0.224 4.224 18 N -0.563 5.563 19 Si 0.774 3.226 20 H -0.210 1.210 21 H -0.221 1.221 22 H -0.210 1.210 23 C 0.015 3.985 24 C -0.012 4.012 25 O -0.378 6.378 26 C 0.001 3.999 27 C -0.172 4.172 28 C -0.184 4.184 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.134 0.866 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.115 0.885 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.089 0.911 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.043 0.957 48 H 0.220 0.780 49 H 0.068 0.932 50 H 0.061 0.939 51 H 0.111 0.889 52 H 0.157 0.843 53 H 0.141 0.859 54 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.373 9.958 16.101 22.616 hybrid contribution -0.255 0.147 -1.274 1.307 sum -12.628 10.105 14.828 21.942 Atomic orbital electron populations 1.22364 0.86778 1.02019 1.00672 1.61788 1.08989 1.14962 1.44079 1.22364 1.00786 0.87646 1.01124 1.21805 1.01299 0.87780 0.92195 1.21312 1.05648 0.96516 0.92908 1.19956 0.81180 0.76504 0.87496 1.90617 1.55830 1.52711 1.48358 1.48106 1.05814 1.56746 1.22394 1.22027 0.90385 0.96107 0.92702 1.21914 0.99043 0.98226 0.96798 1.21745 0.97788 0.99599 0.95933 1.20690 0.92501 0.93023 0.87608 0.93261 1.43804 1.58482 1.05277 1.22655 1.18748 1.02627 0.95971 1.18405 0.94011 1.25494 0.96083 0.99107 1.01702 1.70079 1.19826 1.27160 1.39264 0.85655 0.77626 0.77585 0.81746 1.21005 1.22084 1.20999 1.20965 0.95427 0.85262 0.96821 1.22901 0.99317 0.94540 0.84478 1.86744 1.41756 1.79384 1.29923 1.21700 0.96600 0.95108 0.86447 1.23258 0.99452 0.99446 0.95032 1.23063 0.90369 1.03134 1.01848 0.93857 0.92016 0.92425 0.91302 0.91656 0.93986 0.91116 0.88886 0.86577 0.91634 0.91130 0.88475 0.93743 0.94028 0.94364 0.91105 0.93694 0.93339 0.95741 0.78007 0.93196 0.93882 0.88947 0.84256 0.85906 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.13 127.69 1.17 1.74 16 2 N -0.57 -12.13 4.71 -948.82 -4.47 -16.60 16 3 C 0.03 0.46 9.56 127.69 1.22 1.68 16 4 C 0.10 1.63 4.46 86.30 0.39 2.02 16 5 C -0.16 -3.39 0.48 -52.93 -0.03 -3.42 16 6 C 0.56 18.26 6.67 87.66 0.58 18.84 16 7 O -0.59 -25.20 16.16 -3.03 -0.05 -25.25 16 8 N -0.60 -19.47 2.97 -818.96 -2.43 -21.91 16 9 C 0.11 2.62 5.58 86.36 0.48 3.10 16 10 C -0.12 -3.04 6.08 30.67 0.19 -2.86 16 11 C -0.11 -4.16 5.11 30.62 0.16 -4.01 16 12 C 0.17 7.10 2.78 45.06 0.13 7.23 16 13 H 0.05 2.02 7.87 -2.39 -0.02 2.00 16 14 N -0.58 -29.08 2.33 -677.66 -1.58 -30.66 16 15 C -0.23 -12.60 8.01 84.03 0.67 -11.93 16 16 H 0.04 2.41 6.74 -2.91 -0.02 2.39 16 17 C -0.03 -1.56 4.92 84.86 0.42 -1.15 16 18 N -0.92 -54.05 11.45 21.65 0.25 -53.80 16 19 Si 0.94 47.17 29.60 68.60 2.03 49.20 16 20 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 21 H -0.29 -14.73 7.11 99.48 0.71 -14.03 16 22 H -0.28 -14.32 7.11 99.48 0.71 -13.62 16 23 C 0.14 6.85 5.57 86.38 0.48 7.34 16 24 C 0.07 2.81 7.39 71.98 0.53 3.35 16 25 O -0.57 -25.54 13.38 -148.98 -1.99 -27.54 16 26 C 0.13 5.24 5.75 86.35 0.50 5.73 16 27 C -0.13 -2.00 9.54 30.62 0.29 -1.71 16 28 C -0.15 -2.67 8.15 30.62 0.25 -2.42 16 29 H 0.04 0.62 8.08 -2.39 -0.02 0.60 16 30 H 0.06 1.18 8.06 -2.39 -0.02 1.16 16 31 H 0.06 1.34 6.39 -2.39 -0.02 1.33 16 32 H 0.07 1.11 8.11 -2.39 -0.02 1.09 16 33 H 0.06 1.08 8.08 -2.39 -0.02 1.06 16 34 H 0.04 0.52 8.14 -2.38 -0.02 0.50 16 35 H 0.07 0.83 8.01 -2.39 -0.02 0.81 16 36 H 0.09 1.41 5.70 -2.39 -0.01 1.40 16 37 H 0.12 1.96 4.36 -2.39 -0.01 1.95 16 38 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.04 1.86 7.70 -2.39 -0.02 1.84 16 42 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 44 H 0.07 3.97 5.50 -2.39 -0.01 3.96 16 45 H 0.04 2.02 8.03 -2.38 -0.02 2.00 16 46 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.37 12.38 9.12 -74.06 -0.68 11.71 16 49 H 0.05 2.36 7.03 -2.39 -0.02 2.34 16 50 H 0.04 1.98 6.80 -2.38 -0.02 1.97 16 51 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 52 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 53 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 54 H 0.08 1.85 8.02 -2.39 -0.02 1.83 16 Total: -1.00 -75.87 414.44 -0.62 -76.49 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.20 Total: 26.52 kcal Atomic # 6 Polarization: 16.13 SS G_CDS: 7.42 Total: 23.55 kcal Atomic # 7 Polarization: -114.73 SS G_CDS: -8.24 Total: -122.97 kcal Atomic # 8 Polarization: -50.75 SS G_CDS: -2.04 Total: -52.79 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -75.87 -0.62 -76.49 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691532702.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.537 kcal (2) G-P(sol) polarization free energy of solvation -75.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds