Wall clock time and date at job start Sat Apr 11 2020 05:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 120.00028 * 2 1 4 4 C 1.53004 * 109.46933 * 84.36304 * 3 2 1 5 5 H 1.08991 * 112.78006 * 316.23261 * 4 3 2 6 6 C 1.53754 * 113.55238 * 87.09230 * 4 3 2 7 7 C 1.53496 * 83.25808 * 140.98316 * 6 4 3 8 8 N 1.47069 * 87.98784 * 333.76422 * 7 6 4 9 9 C 1.36934 * 136.05813 * 207.08833 * 8 7 6 10 10 H 1.08009 * 119.99607 * 172.13701 * 9 8 7 11 11 C 1.38807 * 120.00007 * 351.85766 * 9 8 7 12 12 N 1.31613 * 120.00127 * 0.27757 * 11 9 8 13 13 Si 1.86802 * 119.99886 * 180.27667 * 11 9 8 14 14 H 1.48499 * 109.46994 * 90.00268 * 13 11 9 15 15 H 1.48500 * 109.47318 * 209.99908 * 13 11 9 16 16 H 1.48501 * 109.47457 * 330.00317 * 13 11 9 17 17 C 1.34775 * 119.99621 * 179.97438 * 2 1 3 18 18 O 1.21283 * 120.00102 * 179.97438 * 17 2 1 19 19 C 1.50695 * 120.00348 * 0.02562 * 17 2 1 20 20 C 1.53001 * 109.47378 * 179.97438 * 19 17 2 21 21 C 1.53002 * 109.47106 * 179.97438 * 20 19 17 22 22 C 1.53001 * 109.47106 * 179.97438 * 21 20 19 23 23 N 1.46898 * 109.47076 * 180.02562 * 22 21 20 24 24 C 1.47009 * 110.99666 * 293.63116 * 23 22 21 25 25 C 1.53102 * 109.25685 * 177.61007 * 24 23 22 26 26 O 1.43019 * 109.26134 * 56.85008 * 25 24 23 27 27 C 1.43011 * 113.73573 * 301.33404 * 26 25 24 28 28 C 1.47018 * 110.99928 * 169.99806 * 23 22 21 29 29 H 1.09003 * 109.46576 * 90.22285 * 1 2 3 30 30 H 1.08998 * 109.47217 * 210.21655 * 1 2 3 31 31 H 1.08998 * 109.47183 * 330.22468 * 1 2 3 32 32 H 1.08993 * 109.47200 * 324.35919 * 3 2 1 33 33 H 1.09004 * 109.47038 * 204.35858 * 3 2 1 34 34 H 1.09002 * 114.39426 * 27.42443 * 6 4 3 35 35 H 1.08999 * 114.26870 * 254.53490 * 6 4 3 36 36 H 1.09002 * 113.46916 * 218.98183 * 7 6 4 37 37 H 1.09005 * 113.52179 * 88.54961 * 7 6 4 38 38 H 0.97005 * 120.00306 * 179.97438 * 12 11 9 39 39 H 1.09003 * 109.46962 * 299.99549 * 19 17 2 40 40 H 1.08997 * 109.47314 * 59.99685 * 19 17 2 41 41 H 1.08998 * 109.47278 * 299.99904 * 20 19 17 42 42 H 1.09005 * 109.47225 * 59.99981 * 20 19 17 43 43 H 1.08998 * 109.47205 * 300.00232 * 21 20 19 44 44 H 1.09005 * 109.46862 * 60.00042 * 21 20 19 45 45 H 1.09003 * 109.46841 * 300.00072 * 22 21 20 46 46 H 1.08997 * 109.47021 * 59.99954 * 22 21 20 47 47 H 1.08996 * 109.51354 * 297.54012 * 24 23 22 48 48 H 1.09004 * 109.50989 * 57.67982 * 24 23 22 49 49 H 1.09003 * 109.50773 * 296.91350 * 25 24 23 50 50 H 1.08998 * 109.50886 * 176.78773 * 25 24 23 51 51 H 1.09009 * 109.50988 * 298.73107 * 27 26 25 52 52 H 1.09000 * 109.54325 * 178.62463 * 27 26 25 53 53 H 1.08996 * 109.50604 * 302.32838 * 28 23 22 54 54 H 1.09005 * 109.50248 * 62.45525 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3298 1.7812 1.4356 5 1 1.4045 1.6878 2.0040 6 6 3.5603 1.2294 2.1740 7 6 3.6356 2.6547 2.7386 8 7 2.9411 3.1157 1.5270 9 6 2.8841 4.2779 0.8051 10 1 2.3696 4.2991 -0.1444 11 6 3.4826 5.4300 1.2961 12 7 4.1096 5.4041 2.4530 13 14 3.3982 7.0173 0.3149 14 1 2.1851 7.7783 0.7078 15 1 4.6065 7.8351 0.5913 16 1 3.3359 6.7006 -1.1346 17 6 2.1388 -1.1672 0.0005 18 8 3.3517 -1.1673 0.0001 19 6 1.3853 -2.4723 0.0005 20 6 2.3795 -3.6353 0.0005 21 6 1.6145 -4.9603 0.0012 22 6 2.6086 -6.1232 0.0005 23 7 1.8741 -7.3954 0.0005 24 6 1.1347 -7.5767 1.2582 25 6 0.3382 -8.8826 1.1918 26 8 1.2320 -9.9675 0.9280 27 6 1.9681 -9.8237 -0.2897 28 6 2.7811 -8.5275 -0.2385 29 1 -0.3632 -0.0040 -1.0277 30 1 -0.3633 -0.8880 0.5172 31 1 -0.3633 0.8920 0.5103 32 1 1.6560 2.0009 -0.5988 33 1 3.1900 1.1152 -0.4239 34 1 4.3931 0.9618 1.5236 35 1 3.3316 0.4657 2.9174 36 1 4.6538 3.0338 2.8261 37 1 3.0548 2.7925 3.6507 38 1 4.5282 6.2092 2.7960 39 1 0.7584 -2.5298 0.8903 40 1 0.7590 -2.5302 -0.8896 41 1 3.0062 -3.5776 -0.8894 42 1 3.0062 -3.5776 0.8905 43 1 0.9881 -5.0177 0.8913 44 1 0.9875 -5.0182 -0.8886 45 1 3.2347 -6.0655 -0.8900 46 1 3.2359 -6.0655 0.8900 47 1 1.8372 -7.6209 2.0904 48 1 0.4508 -6.7402 1.4023 49 1 -0.4012 -8.8178 0.3936 50 1 -0.1664 -9.0499 2.1434 51 1 1.2761 -9.7863 -1.1311 52 1 2.6423 -10.6717 -0.4104 53 1 3.2991 -8.3849 -1.1868 54 1 3.5100 -8.5867 0.5699 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691665235.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:47 Heat of formation + Delta-G solvation = -45.433438 kcal Electronic energy + Delta-G solvation = -29533.095415 eV Core-core repulsion = 25505.881676 eV Total energy + Delta-G solvation = -4027.213738 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.07771 -40.51683 -39.65913 -37.47425 -36.41360 -35.11241 -34.28123 -32.15893 -31.29182 -29.93979 -29.65948 -27.78833 -27.05182 -25.42549 -25.02122 -24.61165 -23.26658 -21.84616 -21.31084 -21.06213 -19.93597 -18.72382 -17.81919 -17.50008 -17.34322 -17.19113 -16.94210 -16.72137 -16.31157 -15.99789 -15.84449 -15.78298 -15.60661 -15.04300 -14.96066 -14.85947 -14.10405 -13.97708 -13.84612 -13.57695 -13.48771 -13.42672 -13.15467 -13.06520 -12.98390 -12.66210 -12.64354 -12.49376 -12.40672 -12.27413 -12.23680 -12.15211 -11.85888 -11.81519 -11.66997 -11.55691 -11.28307 -11.18971 -10.87330 -10.70956 -10.60720 -9.55391 -9.41542 -8.91056 -7.92358 -5.25916 1.44130 1.46893 1.55309 1.76303 2.08311 2.48143 2.74086 2.98397 3.28571 3.42718 3.71105 3.82498 3.86009 3.95458 4.00965 4.05097 4.19065 4.21512 4.23803 4.30477 4.34278 4.37655 4.41781 4.43870 4.50981 4.58704 4.62655 4.66273 4.71937 4.76682 4.78664 4.82284 4.83877 4.89005 4.92430 4.96880 4.98589 5.02118 5.04235 5.08720 5.10669 5.19466 5.37162 5.45276 5.48464 5.53927 5.72016 5.90810 5.96439 5.97514 6.19449 6.55120 6.88306 7.31629 7.58823 8.61040 9.26892 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.031837 B = 0.001607 C = 0.001590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.260396 B =17420.872958 C =17605.133375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.614 5.614 3 C 0.128 3.872 4 C 0.138 3.862 5 H 0.053 0.947 6 C -0.132 4.132 7 C 0.153 3.847 8 N -0.629 5.629 9 C -0.225 4.225 10 H 0.090 0.910 11 C -0.071 4.071 12 N -0.956 5.956 13 Si 0.980 3.020 14 H -0.283 1.283 15 H -0.297 1.297 16 H -0.266 1.266 17 C 0.499 3.501 18 O -0.585 6.585 19 C -0.125 4.125 20 C -0.098 4.098 21 C -0.101 4.101 22 C 0.054 3.946 23 N -0.542 5.542 24 C 0.013 3.987 25 C 0.061 3.939 26 O -0.410 6.410 27 C 0.063 3.937 28 C 0.015 3.985 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.027 0.973 37 H 0.020 0.980 38 H 0.248 0.752 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.026 0.974 47 H 0.031 0.969 48 H 0.103 0.897 49 H 0.064 0.936 50 H 0.111 0.889 51 H 0.064 0.936 52 H 0.111 0.889 53 H 0.096 0.904 54 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.226 -30.228 -6.068 33.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.347 5.347 3 C 0.004 3.996 4 C 0.032 3.968 5 H 0.071 0.929 6 C -0.170 4.170 7 C 0.027 3.973 8 N -0.355 5.355 9 C -0.352 4.352 10 H 0.107 0.893 11 C -0.264 4.264 12 N -0.605 5.605 13 Si 0.808 3.192 14 H -0.210 1.210 15 H -0.224 1.224 16 H -0.190 1.190 17 C 0.290 3.710 18 O -0.465 6.465 19 C -0.164 4.164 20 C -0.137 4.137 21 C -0.139 4.139 22 C -0.073 4.073 23 N -0.267 5.267 24 C -0.115 4.115 25 C -0.016 4.016 26 O -0.329 6.329 27 C -0.014 4.014 28 C -0.113 4.113 29 H 0.092 0.908 30 H 0.121 0.879 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.045 0.955 37 H 0.038 0.962 38 H 0.057 0.943 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.094 0.906 46 H 0.044 0.956 47 H 0.049 0.951 48 H 0.121 0.879 49 H 0.083 0.917 50 H 0.129 0.871 51 H 0.082 0.918 52 H 0.129 0.871 53 H 0.114 0.886 54 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -11.876 -30.032 -6.431 32.929 hybrid contribution 1.097 1.802 0.515 2.172 sum -10.779 -28.230 -5.916 30.792 Atomic orbital electron populations 1.22075 0.77010 1.04605 1.03293 1.47999 1.08523 1.05139 1.73002 1.21360 0.96867 0.84648 0.96760 1.22538 0.95057 0.84333 0.94920 0.92928 1.23414 0.98367 0.95725 0.99534 1.21909 0.95804 0.90146 0.89394 1.45983 1.51832 1.09471 1.28254 1.19321 1.29948 0.85909 1.00068 0.89277 1.25736 1.01387 1.01027 0.98216 1.70049 1.41125 1.28171 1.21165 0.85050 0.76685 0.79099 0.78350 1.21013 1.22361 1.19026 1.21593 0.87932 0.86638 0.74872 1.90690 1.16345 1.88009 1.51452 1.21710 0.99135 0.89084 1.06471 1.21216 0.97375 0.93069 1.02039 1.21476 0.97638 0.91229 1.03557 1.22143 0.95699 0.88698 1.00773 1.62281 1.27873 1.02234 1.34295 1.22901 0.98356 1.00048 0.90168 1.22811 0.91390 0.84632 1.02744 1.87958 1.57541 1.45033 1.42345 1.22776 0.94947 0.96976 0.86714 1.22838 0.94758 0.91625 1.02120 0.90837 0.87928 0.91399 0.91160 0.92332 0.91547 0.90651 0.95465 0.96194 0.94340 0.86472 0.86354 0.92758 0.93188 0.90756 0.90109 0.90638 0.95570 0.95076 0.87860 0.91729 0.87109 0.91810 0.87120 0.88567 0.94949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.18 10.26 127.77 1.31 2.49 16 2 N -0.61 -16.35 2.87 -846.76 -2.43 -18.79 16 3 C 0.13 4.65 5.42 86.38 0.47 5.12 16 4 C 0.14 5.74 4.31 41.88 0.18 5.92 16 5 H 0.05 2.08 8.14 -2.39 -0.02 2.07 16 6 C -0.13 -5.57 8.03 31.02 0.25 -5.32 16 7 C 0.15 7.85 7.22 83.18 0.60 8.45 16 8 N -0.63 -33.31 3.64 -713.36 -2.59 -35.90 16 9 C -0.22 -12.72 10.55 84.03 0.89 -11.83 16 10 H 0.09 4.72 7.83 -2.91 -0.02 4.70 16 11 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 12 N -0.96 -59.75 11.73 21.65 0.25 -59.50 16 13 Si 0.98 46.34 29.55 68.60 2.03 48.37 16 14 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 15 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 17 C 0.50 13.52 7.67 87.66 0.67 14.19 16 18 O -0.58 -21.62 15.48 -3.04 -0.05 -21.67 16 19 C -0.12 -1.92 4.26 29.85 0.13 -1.80 16 20 C -0.10 -1.67 4.50 30.60 0.14 -1.54 16 21 C -0.10 -1.20 5.15 30.60 0.16 -1.04 16 22 C 0.05 0.76 4.96 86.30 0.43 1.19 16 23 N -0.54 -7.33 4.73 -895.21 -4.23 -11.56 16 24 C 0.01 0.16 5.44 86.32 0.47 0.63 16 25 C 0.06 0.70 7.01 72.02 0.50 1.21 16 26 O -0.41 -6.52 10.83 -148.98 -1.61 -8.14 16 27 C 0.06 0.73 7.01 72.01 0.50 1.24 16 28 C 0.01 0.19 5.65 86.31 0.49 0.67 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.10 1.00 6.45 -2.39 -0.02 0.98 16 31 H 0.07 1.23 8.07 -2.39 -0.02 1.21 16 32 H 0.07 2.53 8.11 -2.39 -0.02 2.51 16 33 H 0.06 2.47 7.00 -2.38 -0.02 2.46 16 34 H 0.07 3.01 7.95 -2.39 -0.02 2.99 16 35 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 36 H 0.03 1.55 7.50 -2.39 -0.02 1.53 16 37 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.25 15.01 8.31 -92.70 -0.77 14.24 16 39 H 0.12 1.24 7.40 -2.39 -0.02 1.23 16 40 H 0.12 1.23 8.11 -2.39 -0.02 1.21 16 41 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 42 H 0.05 1.05 8.10 -2.38 -0.02 1.03 16 43 H 0.07 0.73 6.52 -2.39 -0.02 0.71 16 44 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 45 H 0.08 1.07 8.04 -2.39 -0.02 1.05 16 46 H 0.03 0.42 8.12 -2.39 -0.02 0.40 16 47 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 48 H 0.10 0.95 6.39 -2.39 -0.02 0.94 16 49 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 50 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 51 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 52 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 53 H 0.10 1.00 8.09 -2.39 -0.02 0.98 16 54 H 0.03 0.47 8.14 -2.38 -0.02 0.45 16 Total: -1.00 -77.16 422.73 -0.15 -77.30 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.84 Total: 13.97 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 7.65 Total: 15.91 kcal Atomic # 7 Polarization: -116.74 SS G_CDS: -9.01 Total: -125.74 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -1.66 Total: -29.81 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -77.16 -0.15 -77.30 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691665235.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.869 kcal (2) G-P(sol) polarization free energy of solvation -77.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds