Wall clock time and date at job start Sat Apr 11 2020 05:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42902 * 109.47228 * 2 1 4 4 C 1.42898 * 113.99918 * 179.97438 * 3 2 1 5 5 H 1.08999 * 110.30466 * 27.82961 * 4 3 2 6 6 C 1.54385 * 110.43689 * 265.59124 * 4 3 2 7 7 N 1.48143 * 104.61793 * 264.95589 * 6 4 3 8 8 C 1.34776 * 127.83919 * 140.42615 * 7 6 4 9 9 O 1.21276 * 119.99941 * 354.94509 * 8 7 6 10 10 C 1.50697 * 120.00167 * 174.95883 * 8 7 6 11 11 C 1.53120 * 109.51957 * 267.54022 * 10 8 7 12 12 C 1.53036 * 109.27846 * 182.43910 * 11 10 8 13 13 N 1.46849 * 109.52444 * 59.18097 * 12 11 10 14 14 C 1.46900 * 111.00003 * 174.15949 * 13 12 11 15 15 C 1.46846 * 111.19600 * 298.25937 * 13 12 11 16 16 C 1.53034 * 109.52638 * 61.73936 * 15 13 12 17 17 C 1.48310 * 104.39124 * 320.46784 * 7 6 4 18 18 C 1.54287 * 110.33936 * 150.00007 * 4 3 2 19 19 H 1.09004 * 110.34420 * 0.02562 * 18 4 3 20 20 C 1.52997 * 110.34799 * 237.84742 * 18 4 3 21 21 N 1.46493 * 109.47551 * 176.47693 * 20 18 4 22 22 C 1.36939 * 120.00146 * 180.02562 * 21 20 18 23 23 H 1.08001 * 120.00059 * 0.02562 * 22 21 20 24 24 C 1.38811 * 120.00071 * 179.97438 * 22 21 20 25 25 N 1.31614 * 120.00224 * 180.02562 * 24 22 21 26 26 Si 1.86807 * 120.00042 * 0.02562 * 24 22 21 27 27 H 1.48492 * 109.47331 * 89.99787 * 26 24 22 28 28 H 1.48499 * 109.46990 * 210.00172 * 26 24 22 29 29 H 1.48507 * 109.46875 * 329.99198 * 26 24 22 30 30 H 1.09000 * 109.47259 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46921 * 299.99895 * 1 2 3 32 32 H 1.09005 * 109.47234 * 59.99615 * 1 2 3 33 33 H 1.09003 * 109.46921 * 240.00105 * 2 1 3 34 34 H 1.08991 * 109.47093 * 120.00330 * 2 1 3 35 35 H 1.09006 * 110.40325 * 23.73923 * 6 4 3 36 36 H 1.08997 * 110.40709 * 146.04631 * 6 4 3 37 37 H 1.08997 * 109.52805 * 27.73134 * 10 8 7 38 38 H 1.08996 * 109.50704 * 302.38169 * 11 10 8 39 39 H 1.09000 * 109.50403 * 62.50054 * 11 10 8 40 40 H 1.08996 * 109.46560 * 299.16426 * 12 11 10 41 41 H 1.09004 * 109.46164 * 179.19986 * 12 11 10 42 42 H 1.09003 * 109.46926 * 184.20796 * 14 13 12 43 43 H 1.08998 * 109.47436 * 304.21244 * 14 13 12 44 44 H 1.08998 * 109.47145 * 64.21425 * 14 13 12 45 45 H 1.09007 * 109.46074 * 301.72228 * 15 13 12 46 46 H 1.08996 * 109.45944 * 181.75733 * 15 13 12 47 47 H 1.08993 * 109.50332 * 180.87826 * 16 15 13 48 48 H 1.09004 * 109.50250 * 60.75983 * 16 15 13 49 49 H 1.09001 * 110.38904 * 280.73601 * 17 7 6 50 50 H 1.09005 * 110.50557 * 158.25449 * 17 7 6 51 51 H 1.09006 * 109.46979 * 56.47672 * 20 18 4 52 52 H 1.09002 * 109.47041 * 296.48362 * 20 18 4 53 53 H 0.97005 * 119.99992 * 359.97438 * 21 20 18 54 54 H 0.97006 * 120.00399 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8795 0.5886 -0.4763 6 6 3.9589 1.6137 1.4432 7 7 4.0925 3.0761 1.6387 8 6 3.8005 3.7928 2.7421 9 8 3.2872 3.2517 3.6984 10 6 4.1116 5.2666 2.7875 11 6 5.5008 5.4777 3.3959 12 6 5.7860 6.9780 3.4956 13 7 4.7630 7.6175 4.3328 14 6 5.0817 9.0327 4.5645 15 6 3.4260 7.4686 3.7440 16 6 3.0703 5.9831 3.6517 17 6 4.6194 3.5743 0.3450 18 6 3.8669 2.7512 -0.7228 19 1 2.9944 3.2996 -1.0781 20 6 4.7973 2.4184 -1.8908 21 7 5.1318 3.6475 -2.6143 22 6 5.9569 3.5964 -3.7061 23 1 6.3607 2.6498 -4.0339 24 6 6.2735 4.7609 -4.3919 25 7 7.0661 4.7118 -5.4415 26 14 5.5745 6.3980 -3.8252 27 1 6.5007 7.0188 -2.8445 28 1 5.4148 7.2993 -4.9945 29 1 4.2522 6.1771 -3.1864 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.2455 1.1986 2.1552 36 1 4.9272 1.1244 1.5476 37 1 4.0895 5.6749 1.7772 38 1 5.5335 5.0342 4.3910 39 1 6.2514 5.0060 2.7618 40 1 5.7668 7.4183 2.4987 41 1 6.7687 7.1320 3.9415 42 1 4.3491 9.4629 5.2474 43 1 6.0772 9.1143 5.0008 44 1 5.0550 9.5710 3.6170 45 1 3.4179 7.9067 2.7459 46 1 2.6945 7.9790 4.3705 47 1 2.0844 5.8723 3.2004 48 1 3.0648 5.5474 4.6509 49 1 5.6923 3.3942 0.2772 50 1 4.4033 4.6363 0.2282 51 1 4.2981 1.7236 -2.5663 52 1 5.7103 1.9613 -1.5093 53 1 4.7683 4.4975 -2.3205 54 1 7.2876 5.5256 -5.9206 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691762359.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:58 Heat of formation + Delta-G solvation = -86.629932 kcal Electronic energy + Delta-G solvation = -31273.053368 eV Core-core repulsion = 27244.053215 eV Total energy + Delta-G solvation = -4029.000152 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.60381 -40.21217 -39.01125 -37.80993 -36.43729 -34.65096 -33.89129 -32.58155 -31.91639 -31.38755 -29.85389 -28.01812 -27.14204 -25.34252 -24.21320 -24.08857 -23.88891 -22.97191 -21.53011 -21.13123 -20.09136 -19.59435 -18.47225 -17.88605 -17.25797 -16.89931 -16.55267 -16.36720 -16.23599 -16.05775 -15.65714 -15.59926 -15.44227 -15.26879 -14.87341 -14.67805 -14.37954 -14.12677 -14.00108 -13.80776 -13.55672 -13.46472 -13.43036 -13.29567 -12.99883 -12.96520 -12.76460 -12.54625 -12.35889 -12.34909 -12.30008 -12.17753 -12.12725 -12.02113 -11.83218 -11.78471 -11.54247 -11.49287 -10.97665 -10.79054 -10.64142 -9.75941 -9.32044 -9.28548 -7.99969 -5.33943 1.39369 1.43086 1.50232 1.50935 1.83508 2.50610 2.59187 2.95008 3.23184 3.31880 3.38861 3.58398 3.71141 3.75569 3.84871 3.94592 4.07752 4.11034 4.12334 4.18547 4.23562 4.31828 4.34446 4.42456 4.47673 4.49863 4.50608 4.52304 4.53261 4.63112 4.67002 4.69905 4.75573 4.82012 4.83461 4.87311 4.90331 4.97164 5.02683 5.02917 5.06420 5.08138 5.11949 5.22367 5.27461 5.29526 5.78810 6.07071 6.09297 6.22894 6.28015 6.44757 7.05260 7.10200 7.84852 8.03766 9.21403 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.006502 B = 0.004462 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4305.632686 B = 6274.109923 C = 9740.717786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.397 6.397 4 C 0.088 3.912 5 H 0.102 0.898 6 C 0.084 3.916 7 N -0.617 5.617 8 C 0.540 3.460 9 O -0.580 6.580 10 C -0.102 4.102 11 C -0.097 4.097 12 C 0.058 3.942 13 N -0.558 5.558 14 C 0.025 3.975 15 C 0.060 3.940 16 C -0.095 4.095 17 C 0.110 3.890 18 C -0.101 4.101 19 H 0.083 0.917 20 C 0.170 3.830 21 N -0.755 5.755 22 C -0.232 4.232 23 H 0.060 0.940 24 C -0.061 4.061 25 N -0.984 5.984 26 Si 0.948 3.052 27 H -0.272 1.272 28 H -0.301 1.301 29 H -0.251 1.251 30 H 0.092 0.908 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.038 0.962 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.027 0.973 45 H 0.038 0.962 46 H 0.089 0.911 47 H 0.068 0.932 48 H 0.066 0.934 49 H 0.091 0.909 50 H 0.087 0.913 51 H 0.029 0.971 52 H 0.043 0.957 53 H 0.366 0.634 54 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.371 -0.150 20.074 21.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.317 6.317 4 C 0.029 3.971 5 H 0.120 0.880 6 C -0.039 4.039 7 N -0.350 5.350 8 C 0.331 3.669 9 O -0.460 6.460 10 C -0.124 4.124 11 C -0.136 4.136 12 C -0.070 4.070 13 N -0.283 5.283 14 C -0.123 4.123 15 C -0.068 4.068 16 C -0.133 4.133 17 C -0.012 4.012 18 C -0.121 4.121 19 H 0.101 0.899 20 C 0.043 3.957 21 N -0.401 5.401 22 C -0.363 4.363 23 H 0.078 0.922 24 C -0.252 4.252 25 N -0.634 5.634 26 Si 0.775 3.225 27 H -0.197 1.197 28 H -0.228 1.228 29 H -0.176 1.176 30 H 0.111 0.889 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.045 0.955 45 H 0.056 0.944 46 H 0.108 0.892 47 H 0.086 0.914 48 H 0.085 0.915 49 H 0.109 0.891 50 H 0.105 0.895 51 H 0.047 0.953 52 H 0.061 0.939 53 H 0.199 0.801 54 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.668 -0.571 20.988 22.715 hybrid contribution -0.072 1.060 -1.174 1.583 sum -8.740 0.489 19.814 21.661 Atomic orbital electron populations 1.21752 0.93216 1.03347 1.02286 1.22746 0.96233 0.82882 1.01024 1.87967 1.20648 1.28186 1.94868 1.22973 0.81691 0.98383 0.94034 0.88023 1.22933 1.02291 0.81640 0.96997 1.49074 1.64024 1.08822 1.13084 1.20632 0.76467 0.89413 0.80433 1.90651 1.45232 1.73358 1.36767 1.21398 0.98658 0.90127 1.02176 1.21458 0.93777 0.97013 1.01309 1.22091 0.95937 0.93178 0.95756 1.61949 1.02323 1.15826 1.48194 1.22398 1.02827 0.86601 1.00460 1.22083 0.90969 0.95464 0.98293 1.21401 0.97069 0.94825 1.00033 1.22604 0.98906 0.99368 0.80337 1.22287 0.98665 0.96346 0.94775 0.89876 1.20773 0.95738 0.88360 0.90782 1.42651 1.58249 1.05644 1.33582 1.19012 1.19459 0.94434 1.03379 0.92244 1.25457 1.00525 1.01384 0.97846 1.69878 1.42167 1.28439 1.22961 0.85512 0.79448 0.80100 0.77412 1.19747 1.22806 1.17597 0.88919 0.92853 0.92563 0.92142 0.92380 0.90548 0.88192 0.88645 0.91510 0.90197 0.94348 0.89080 0.90507 0.90542 0.95453 0.94368 0.89218 0.91369 0.91475 0.89088 0.89498 0.95339 0.93888 0.80056 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 10.28 71.98 0.74 -1.84 16 2 C 0.05 0.91 6.50 71.98 0.47 1.38 16 3 O -0.40 -10.27 9.95 -148.98 -1.48 -11.75 16 4 C 0.09 2.06 3.19 31.50 0.10 2.16 16 5 H 0.10 2.00 7.38 -2.39 -0.02 1.98 16 6 C 0.08 1.95 6.81 86.53 0.59 2.54 16 7 N -0.62 -15.81 3.32 -807.53 -2.68 -18.49 16 8 C 0.54 15.14 6.95 87.66 0.61 15.75 16 9 O -0.58 -20.21 16.42 -3.02 -0.05 -20.26 16 10 C -0.10 -2.31 2.31 -11.46 -0.03 -2.33 16 11 C -0.10 -1.97 5.36 30.65 0.16 -1.80 16 12 C 0.06 1.04 5.46 86.32 0.47 1.51 16 13 N -0.56 -10.20 4.91 -922.59 -4.53 -14.73 16 14 C 0.02 0.35 9.59 127.69 1.22 1.57 16 15 C 0.06 1.08 5.46 86.33 0.47 1.55 16 16 C -0.09 -2.07 5.05 30.65 0.15 -1.91 16 17 C 0.11 2.71 6.17 86.50 0.53 3.25 16 18 C -0.10 -2.72 2.92 -9.89 -0.03 -2.75 16 19 H 0.08 2.49 7.98 -2.38 -0.02 2.47 16 20 C 0.17 5.62 5.37 86.38 0.46 6.08 16 21 N -0.76 -32.17 5.26 -343.46 -1.81 -33.97 16 22 C -0.23 -12.51 10.47 84.03 0.88 -11.63 16 23 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 24 C -0.06 -3.42 5.50 84.86 0.47 -2.96 16 25 N -0.98 -61.28 13.97 21.65 0.30 -60.97 16 26 Si 0.95 43.08 27.74 68.60 1.90 44.98 16 27 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 28 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 29 H -0.25 -10.23 6.52 99.48 0.65 -9.58 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.06 1.05 8.11 -2.39 -0.02 1.03 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 1.96 7.79 -2.38 -0.02 1.94 16 36 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.10 2.01 6.39 -2.39 -0.02 2.00 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.09 1.42 8.09 -2.39 -0.02 1.40 16 42 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 44 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 46 H 0.09 1.40 8.12 -2.39 -0.02 1.38 16 47 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.07 1.71 7.78 -2.38 -0.02 1.69 16 49 H 0.09 2.19 7.78 -2.39 -0.02 2.17 16 50 H 0.09 2.04 6.52 -2.38 -0.02 2.03 16 51 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 52 H 0.04 1.37 8.02 -2.39 -0.02 1.35 16 53 H 0.37 14.83 5.42 -92.70 -0.50 14.32 16 54 H 0.26 15.31 8.31 -92.70 -0.77 14.54 16 Total: -1.00 -71.22 419.38 -0.77 -71.99 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 0.29 Total: 32.64 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 7.28 Total: 10.57 kcal Atomic # 7 Polarization: -119.45 SS G_CDS: -8.71 Total: -128.17 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -1.53 Total: -32.02 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.90 Total: 44.98 kcal Total: -71.22 -0.77 -71.99 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691762359.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.639 kcal (2) G-P(sol) polarization free energy of solvation -71.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds