Wall clock time and date at job start Sat Apr 11 2020 05:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42906 * 113.99652 * 2 1 4 4 H 1.08997 * 110.05592 * 331.41990 * 3 2 1 5 5 C 1.54269 * 110.03003 * 92.83398 * 3 2 1 6 6 C 1.54886 * 104.19493 * 142.89168 * 5 3 2 7 7 C 1.54888 * 102.74828 * 322.05872 * 6 5 3 8 8 C 1.53876 * 110.02889 * 209.99777 * 3 2 1 9 9 H 1.08997 * 110.06711 * 121.41067 * 8 3 2 10 10 C 1.50693 * 110.03323 * 0.02562 * 8 3 2 11 11 O 1.21292 * 119.99501 * 269.96778 * 10 8 3 12 12 N 1.34777 * 120.00666 * 89.97106 * 10 8 3 13 13 C 1.46496 * 119.99456 * 355.00962 * 12 10 8 14 14 C 1.46496 * 119.99999 * 175.01349 * 12 10 8 15 15 C 1.52994 * 109.47543 * 89.99935 * 14 12 10 16 16 N 1.46894 * 109.47543 * 179.97438 * 15 14 12 17 17 C 1.46894 * 111.00442 * 294.30600 * 16 15 14 18 18 C 1.53235 * 109.34423 * 172.74291 * 17 16 15 19 19 N 1.47082 * 108.51867 * 53.82936 * 18 17 16 20 20 C 1.36941 * 120.87883 * 128.79470 * 19 18 17 21 21 H 1.08000 * 119.99987 * 208.02402 * 20 19 18 22 22 C 1.38810 * 119.99935 * 28.03184 * 20 19 18 23 23 N 1.31612 * 120.00480 * 27.59057 * 22 20 19 24 24 Si 1.86805 * 119.99525 * 207.59081 * 22 20 19 25 25 H 1.48506 * 109.46845 * 94.99455 * 24 22 20 26 26 H 1.48504 * 109.47209 * 214.99046 * 24 22 20 27 27 H 1.48500 * 109.47471 * 334.99179 * 24 22 20 28 28 C 1.47077 * 118.23679 * 308.81369 * 19 18 17 29 29 C 1.46899 * 111.00223 * 169.99901 * 16 15 14 30 30 H 1.09002 * 109.46988 * 60.00287 * 1 2 3 31 31 H 1.09001 * 109.46907 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47483 * 299.99829 * 1 2 3 33 33 H 1.08996 * 110.48446 * 24.21711 * 5 3 2 34 34 H 1.09003 * 110.48609 * 261.57129 * 5 3 2 35 35 H 1.08991 * 110.75829 * 203.74006 * 6 5 3 36 36 H 1.09004 * 110.75477 * 80.36711 * 6 5 3 37 37 H 1.08994 * 110.48891 * 279.25950 * 7 6 5 38 38 H 1.09003 * 110.48542 * 156.61742 * 7 6 5 39 39 H 1.08999 * 109.47300 * 274.34005 * 13 12 10 40 40 H 1.08996 * 109.47403 * 34.34853 * 13 12 10 41 41 H 1.09002 * 109.46820 * 154.34712 * 13 12 10 42 42 H 1.09000 * 109.47463 * 329.99614 * 14 12 10 43 43 H 1.09004 * 109.46939 * 209.99816 * 14 12 10 44 44 H 1.09004 * 109.46885 * 59.99888 * 15 14 12 45 45 H 1.08994 * 109.47045 * 299.99882 * 15 14 12 46 46 H 1.09003 * 109.49077 * 292.70320 * 17 16 15 47 47 H 1.09004 * 109.49425 * 52.77859 * 17 16 15 48 48 H 1.08998 * 109.63086 * 294.11627 * 18 17 16 49 49 H 1.09001 * 109.62804 * 173.53578 * 18 17 16 50 50 H 0.97003 * 120.00155 * 180.02562 * 23 22 20 51 51 H 1.08998 * 109.62665 * 291.47600 * 28 19 18 52 52 H 1.08996 * 109.62884 * 170.89846 * 28 19 18 53 53 H 1.09001 * 109.49663 * 307.21528 * 29 16 15 54 54 H 1.08997 * 109.49117 * 67.26941 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3408 2.0127 -0.4898 5 6 2.2906 1.7591 1.4476 6 6 3.6252 2.5389 1.3496 7 6 4.4265 1.7156 0.3108 8 6 3.3684 1.2778 -0.7228 9 1 3.3586 1.9711 -1.5638 10 6 3.6664 -0.1173 -1.2083 11 8 4.2666 -0.8925 -0.4942 12 7 3.2662 -0.5037 -2.4359 13 6 2.4475 0.3933 -3.2553 14 6 3.6497 -1.8205 -2.9506 15 6 2.5874 -2.8499 -2.5603 16 7 2.9716 -4.1702 -3.0769 17 6 2.9595 -4.1848 -4.5458 18 6 3.5369 -5.5135 -5.0450 19 7 2.7983 -6.6132 -4.4061 20 6 2.2626 -7.6278 -5.1538 21 1 1.3876 -8.1540 -4.8019 22 6 2.8444 -7.9799 -6.3639 23 7 4.1302 -7.7781 -6.5595 24 14 1.8022 -8.7404 -7.7149 25 1 1.3483 -7.6775 -8.6474 26 1 2.6094 -9.7402 -8.4593 27 1 0.6206 -9.4079 -7.1122 28 6 2.6499 -6.5942 -2.9430 29 6 2.1075 -5.2229 -2.5265 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 2.4006 0.8955 2.1034 34 1 1.4931 2.4111 1.8043 35 1 4.1374 2.5504 2.3115 36 1 3.4543 3.5535 0.9895 37 1 4.8816 0.8450 0.7829 38 1 5.1880 2.3358 -0.1622 39 1 1.3966 0.2633 -2.9972 40 1 2.7424 1.4259 -3.0692 41 1 2.5946 0.1578 -4.3094 42 1 4.6105 -2.1110 -2.5258 43 1 3.7311 -1.7764 -4.0367 44 1 1.6265 -2.5595 -2.9852 45 1 2.5060 -2.8940 -1.4743 46 1 1.9351 -4.0766 -4.9021 47 1 3.5651 -3.3605 -4.9227 48 1 4.5919 -5.5775 -4.7785 49 1 3.4252 -5.5776 -6.1274 50 1 4.5366 -8.0238 -7.4053 51 1 3.6197 -6.7621 -2.4744 52 1 1.9519 -7.3729 -2.6356 53 1 2.0951 -5.1517 -1.4389 54 1 1.0948 -5.1000 -2.9106 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691937182.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:17 Heat of formation + Delta-G solvation = -66.187742 kcal Electronic energy + Delta-G solvation = -31415.758081 eV Core-core repulsion = 27387.644369 eV Total energy + Delta-G solvation = -4028.113712 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.47522 -39.87982 -39.11112 -37.15519 -36.56786 -35.89987 -33.48879 -31.74503 -31.35722 -29.79486 -29.18325 -28.06065 -27.13920 -26.87336 -25.12369 -24.34671 -23.28973 -21.87559 -21.68951 -20.88129 -19.75339 -18.78680 -18.54008 -17.62384 -17.22829 -16.98594 -16.47700 -16.44608 -16.09194 -15.81173 -15.67992 -15.41513 -15.27708 -15.15512 -14.94032 -14.78696 -14.61573 -14.36973 -13.91524 -13.86308 -13.40344 -13.33019 -13.21881 -13.08982 -12.94495 -12.61408 -12.53741 -12.47532 -12.33530 -12.26352 -12.13530 -12.05282 -11.96688 -11.86371 -11.72240 -11.57573 -11.48482 -11.39117 -10.68050 -10.56509 -10.50738 -9.66932 -9.27658 -8.73845 -7.92695 -5.32565 1.45420 1.47117 1.57350 1.71463 2.02556 2.50058 2.81837 3.05676 3.18526 3.48383 3.59926 3.63102 3.69719 3.95053 4.08410 4.15817 4.23082 4.25339 4.29762 4.31809 4.39601 4.41507 4.45371 4.48308 4.52912 4.56038 4.57885 4.62270 4.65101 4.71523 4.75654 4.81808 4.86421 4.87518 4.94555 4.96130 4.99072 5.01449 5.05912 5.13879 5.17687 5.20944 5.24911 5.45331 5.54903 5.57687 5.64359 6.14163 6.21352 6.30376 6.33373 6.50700 7.08708 7.30793 7.79603 8.37977 9.13800 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.024511 B = 0.002300 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.071479 B =12168.443846 C =12386.103036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.406 6.406 3 C 0.095 3.905 4 H 0.102 0.898 5 C -0.146 4.146 6 C -0.112 4.112 7 C -0.118 4.118 8 C -0.113 4.113 9 H 0.133 0.867 10 C 0.531 3.469 11 O -0.583 6.583 12 N -0.612 5.612 13 C 0.073 3.927 14 C 0.128 3.872 15 C 0.064 3.936 16 N -0.545 5.545 17 C 0.053 3.947 18 C 0.186 3.814 19 N -0.611 5.611 20 C -0.274 4.274 21 H 0.064 0.936 22 C -0.042 4.042 23 N -0.925 5.925 24 Si 0.962 3.038 25 H -0.283 1.283 26 H -0.294 1.294 27 H -0.268 1.268 28 C 0.145 3.855 29 C 0.061 3.939 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.052 0.948 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.035 0.965 45 H 0.056 0.944 46 H 0.026 0.974 47 H 0.088 0.912 48 H -0.001 1.001 49 H 0.048 0.952 50 H 0.252 0.748 51 H 0.010 0.990 52 H 0.061 0.939 53 H 0.080 0.920 54 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.442 29.154 11.459 32.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.326 6.326 3 C 0.037 3.963 4 H 0.120 0.880 5 C -0.184 4.184 6 C -0.150 4.150 7 C -0.156 4.156 8 C -0.134 4.134 9 H 0.150 0.850 10 C 0.321 3.679 11 O -0.463 6.463 12 N -0.344 5.344 13 C -0.069 4.069 14 C 0.005 3.995 15 C -0.065 4.065 16 N -0.270 5.270 17 C -0.076 4.076 18 C 0.060 3.940 19 N -0.335 5.335 20 C -0.404 4.404 21 H 0.082 0.918 22 C -0.239 4.239 23 N -0.569 5.569 24 Si 0.789 3.211 25 H -0.209 1.209 26 H -0.221 1.221 27 H -0.193 1.193 28 C 0.020 3.980 29 C -0.069 4.069 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.115 0.885 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.109 0.891 44 H 0.053 0.947 45 H 0.075 0.925 46 H 0.044 0.956 47 H 0.106 0.894 48 H 0.017 0.983 49 H 0.066 0.934 50 H 0.061 0.939 51 H 0.028 0.972 52 H 0.079 0.921 53 H 0.098 0.902 54 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -6.468 28.427 11.843 31.467 hybrid contribution -1.051 -0.906 -0.974 1.695 sum -7.519 27.520 10.869 30.530 Atomic orbital electron populations 1.22873 0.79874 1.02830 1.01119 1.88060 1.21064 1.28379 1.95070 1.22903 0.92516 0.85002 0.95917 0.88004 1.22898 0.99160 1.00147 0.96161 1.22410 0.94389 0.99107 0.99057 1.22388 0.97070 1.00053 0.96068 1.22341 0.96959 0.93407 1.00705 0.84974 1.20767 0.76839 0.90060 0.80276 1.90663 1.43810 1.56225 1.55583 1.47843 1.53013 1.16695 1.16850 1.22080 0.94741 0.94363 0.95719 1.21263 0.97406 0.81720 0.99158 1.22192 0.96733 0.88339 0.99229 1.61780 1.53603 1.03855 1.07772 1.22603 0.99016 0.98841 0.87116 1.20558 0.92460 0.85217 0.95762 1.44428 1.64266 1.23410 1.01378 1.19422 1.06242 1.12630 1.02104 0.91795 1.25757 0.95635 1.00056 1.02500 1.70318 1.10059 1.52163 1.24398 0.85351 0.78612 0.77563 0.79541 1.20932 1.22129 1.19271 1.21091 0.97446 0.94987 0.84504 1.22386 0.93588 0.91997 0.98910 0.92302 0.90720 0.92840 0.92920 0.89092 0.90860 0.88552 0.92904 0.89500 0.92210 0.88527 0.89795 0.92123 0.89082 0.94699 0.92548 0.95617 0.89415 0.98285 0.93390 0.93894 0.97159 0.92069 0.90183 0.95388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.85 113.37 1.23 1.64 16 2 O -0.41 -8.43 8.81 -148.98 -1.31 -9.75 16 3 C 0.09 1.33 3.36 31.32 0.11 1.43 16 4 H 0.10 0.76 7.81 -2.39 -0.02 0.74 16 5 C -0.15 -1.91 6.56 31.67 0.21 -1.70 16 6 C -0.11 -1.22 6.91 31.88 0.22 -1.00 16 7 C -0.12 -1.90 6.31 31.67 0.20 -1.70 16 8 C -0.11 -1.80 2.62 -10.82 -0.03 -1.83 16 9 H 0.13 1.15 6.09 -2.39 -0.01 1.13 16 10 C 0.53 13.68 5.44 87.65 0.48 14.16 16 11 O -0.58 -21.32 15.27 -3.07 -0.05 -21.36 16 12 N -0.61 -13.74 2.87 -846.79 -2.43 -16.17 16 13 C 0.07 0.91 10.29 127.77 1.32 2.23 16 14 C 0.13 3.58 5.34 86.38 0.46 4.04 16 15 C 0.06 2.01 5.28 86.30 0.46 2.47 16 16 N -0.54 -20.52 4.63 -895.31 -4.14 -24.67 16 17 C 0.05 2.08 5.46 86.38 0.47 2.55 16 18 C 0.19 9.36 5.52 86.35 0.48 9.84 16 19 N -0.61 -32.58 3.02 -698.15 -2.11 -34.69 16 20 C -0.27 -15.69 9.52 84.03 0.80 -14.89 16 21 H 0.06 3.59 7.97 -2.91 -0.02 3.57 16 22 C -0.04 -2.43 4.61 84.86 0.39 -2.04 16 23 N -0.93 -56.31 12.01 21.65 0.26 -56.05 16 24 Si 0.96 45.34 29.63 68.60 2.03 47.38 16 25 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 26 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 27 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 28 C 0.15 6.67 6.69 86.35 0.58 7.25 16 29 C 0.06 2.32 5.62 86.38 0.49 2.81 16 30 H 0.06 0.58 8.10 -2.39 -0.02 0.56 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.99 8.08 -2.39 -0.02 0.97 16 34 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.05 1.28 6.84 -2.39 -0.02 1.26 16 38 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.10 0.64 5.93 -2.39 -0.01 0.63 16 41 H 0.08 0.91 7.84 -2.39 -0.02 0.89 16 42 H 0.06 2.07 7.50 -2.39 -0.02 2.05 16 43 H 0.09 2.23 6.12 -2.39 -0.01 2.22 16 44 H 0.03 1.02 8.12 -2.38 -0.02 1.00 16 45 H 0.06 1.99 7.97 -2.39 -0.02 1.97 16 46 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.09 2.93 6.16 -2.39 -0.01 2.91 16 48 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 49 H 0.05 2.62 6.58 -2.39 -0.02 2.60 16 50 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 51 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 52 H 0.06 2.68 7.95 -2.39 -0.02 2.66 16 53 H 0.08 2.77 7.99 -2.39 -0.02 2.75 16 54 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -78.05 412.87 0.95 -77.11 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.85 Total: 12.95 kcal Atomic # 6 Polarization: 17.40 SS G_CDS: 7.85 Total: 25.25 kcal Atomic # 7 Polarization: -123.15 SS G_CDS: -8.43 Total: -131.58 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -1.36 Total: -31.11 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.38 kcal Total: -78.05 0.95 -77.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691937182.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.920 kcal (2) G-P(sol) polarization free energy of solvation -78.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds