Wall clock time and date at job start Sat Apr 11 2020 05:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34776 * 120.00468 * 2 1 4 4 O 1.21277 * 119.99856 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00306 * 179.97438 * 3 2 1 6 6 C 1.52995 * 109.47058 * 179.97438 * 5 3 2 7 7 C 1.53006 * 109.47023 * 180.02562 * 6 5 3 8 8 C 1.53004 * 109.47143 * 180.02562 * 7 6 5 9 9 C 1.50693 * 109.47287 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99993 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00414 * 179.97438 * 9 8 7 12 12 C 1.46922 * 120.62660 * 354.21539 * 11 9 8 13 13 C 1.53624 * 108.54270 * 126.36652 * 12 11 9 14 14 C 1.53049 * 109.23914 * 54.85640 * 13 12 11 15 15 C 1.53035 * 109.53542 * 298.51040 * 14 13 12 16 16 C 1.46922 * 120.63186 * 174.49412 * 11 9 8 17 17 H 1.09005 * 109.58693 * 113.80073 * 16 11 9 18 18 C 1.53003 * 109.58773 * 353.51733 * 16 11 9 19 19 C 1.52998 * 109.46733 * 181.62769 * 18 16 11 20 20 N 1.46504 * 109.46800 * 185.07493 * 19 18 16 21 21 C 1.36934 * 120.00239 * 180.02562 * 20 19 18 22 22 H 1.08001 * 119.99963 * 0.02562 * 21 20 19 23 23 C 1.38815 * 120.00507 * 180.02562 * 21 20 19 24 24 N 1.31620 * 119.99352 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00375 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47045 * 59.99748 * 25 23 21 27 27 H 1.48494 * 109.47184 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.46947 * 300.00365 * 25 23 21 29 29 H 1.09006 * 109.46759 * 59.99965 * 1 2 3 30 30 H 1.08993 * 109.47399 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46943 * 300.00518 * 1 2 3 32 32 H 0.96998 * 120.00015 * 180.02562 * 2 1 3 33 33 H 1.09005 * 109.47140 * 60.00355 * 5 3 2 34 34 H 1.08993 * 109.47140 * 300.00502 * 5 3 2 35 35 H 1.08993 * 109.47765 * 300.00377 * 6 5 3 36 36 H 1.09009 * 109.47135 * 60.00308 * 6 5 3 37 37 H 1.08994 * 109.46969 * 299.99939 * 7 6 5 38 38 H 1.08996 * 109.47114 * 60.00416 * 7 6 5 39 39 H 1.09003 * 109.46530 * 299.99827 * 8 7 6 40 40 H 1.08996 * 109.47229 * 59.99931 * 8 7 6 41 41 H 1.09000 * 109.59189 * 246.19987 * 12 11 9 42 42 H 1.09001 * 109.59006 * 6.62924 * 12 11 9 43 43 H 1.09000 * 109.63876 * 294.86803 * 13 12 11 44 44 H 1.09001 * 109.43463 * 174.71937 * 13 12 11 45 45 H 1.09002 * 109.45694 * 178.49096 * 14 13 12 46 46 H 1.08994 * 109.44546 * 58.52609 * 14 13 12 47 47 H 1.08996 * 109.50092 * 301.41093 * 15 14 13 48 48 H 1.09008 * 109.49586 * 181.31634 * 15 14 13 49 49 H 1.09002 * 109.47054 * 301.62752 * 18 16 11 50 50 H 1.09001 * 109.46981 * 61.63179 * 18 16 11 51 51 H 1.08993 * 109.47712 * 305.07185 * 19 18 16 52 52 H 1.08999 * 109.47153 * 65.08000 * 19 18 16 53 53 H 0.97005 * 120.00096 * 0.02562 * 20 19 18 54 54 H 0.96999 * 119.99541 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6459 1.1671 0.0006 6 6 4.1559 2.6095 -0.0002 7 6 5.6860 2.6095 -0.0002 8 6 6.1961 4.0520 -0.0004 9 6 7.7030 4.0520 -0.0011 10 8 8.3094 3.0016 -0.0009 11 7 8.3770 5.2191 -0.0018 12 6 7.6619 6.4963 -0.1294 13 6 8.0731 7.4052 1.0389 14 6 9.5976 7.5383 1.0620 15 6 10.2283 6.1609 1.2787 16 6 9.8411 5.2382 0.1188 17 1 10.2792 5.6114 -0.8069 18 6 10.3516 3.8222 0.3935 19 6 11.8724 3.8516 0.5589 20 7 12.3746 2.4827 0.7010 21 6 13.7157 2.2588 0.8632 22 1 14.4032 3.0914 0.8868 23 6 14.1917 0.9617 0.9974 24 7 13.3539 -0.0529 0.9681 25 14 16.0213 0.6563 1.2180 26 1 16.4925 1.3405 2.4489 27 1 16.2688 -0.8031 1.3366 28 1 16.7572 1.1888 0.0432 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.9499 -0.8400 -0.0004 33 1 4.0096 0.6531 -0.8892 34 1 4.0089 0.6534 0.8907 35 1 3.7930 3.1229 -0.8905 36 1 3.7923 3.1240 0.8894 37 1 6.0493 2.0961 0.8900 38 1 6.0493 2.0953 -0.8900 39 1 5.8327 4.5657 -0.8904 40 1 5.8328 4.5659 0.8895 41 1 7.9259 6.9700 -1.0749 42 1 6.5871 6.3184 -0.0949 43 1 7.7316 6.9710 1.9786 44 1 7.6239 8.3897 0.9080 45 1 9.8916 8.2041 1.8734 46 1 9.9403 7.9494 0.1126 47 1 9.8665 5.7384 2.2161 48 1 11.3132 6.2597 1.3184 49 1 9.8941 3.4418 1.3068 50 1 10.0895 3.1731 -0.4420 51 1 12.3244 4.3152 -0.3179 52 1 12.1301 4.4273 1.4478 53 1 11.7571 1.7349 0.6802 54 1 13.6865 -0.9593 1.0615 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698922830.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:03 Heat of formation + Delta-G solvation = -101.333854 kcal Electronic energy + Delta-G solvation = -29703.473256 eV Core-core repulsion = 25673.835494 eV Total energy + Delta-G solvation = -4029.637762 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.56655 -40.67095 -38.55828 -36.99850 -36.21025 -35.53877 -34.56612 -33.78382 -32.53038 -31.61593 -29.25546 -28.30994 -26.59864 -25.57524 -25.20962 -23.90520 -22.49323 -22.00154 -21.48816 -21.30711 -19.80801 -19.18858 -18.10767 -17.62631 -17.22901 -17.07102 -16.79759 -16.59047 -16.41277 -15.83917 -15.49955 -15.41649 -15.18662 -15.02923 -14.87087 -14.70918 -14.60768 -14.23969 -14.07698 -13.81446 -13.40963 -13.32697 -13.28017 -13.07200 -12.90884 -12.76225 -12.68532 -12.40590 -12.33464 -12.20953 -12.13907 -12.06639 -11.88452 -11.85643 -11.75872 -11.52420 -11.48027 -11.35441 -10.93131 -10.92248 -10.12012 -9.92981 -9.48291 -9.01763 -7.95028 -5.25845 1.44280 1.49721 1.55879 1.64505 1.74229 2.04519 2.35087 2.55412 3.36632 3.50271 3.78673 3.85049 3.88427 3.91335 3.99392 4.04898 4.11955 4.15832 4.28293 4.38859 4.40091 4.43908 4.51582 4.52817 4.58183 4.60973 4.62869 4.74042 4.74856 4.81012 4.83116 4.86357 4.89463 4.93699 4.94712 5.00471 5.08776 5.13752 5.18516 5.25123 5.34140 5.38980 5.41955 5.43978 5.50511 5.51380 5.53303 5.76395 6.26026 6.55218 6.55975 7.26972 7.30273 7.34908 8.07568 8.32204 9.28954 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.008910 B = 0.002269 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3141.623099 B =12337.921303 C =15287.333721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.730 5.730 3 C 0.507 3.493 4 O -0.587 6.587 5 C -0.140 4.140 6 C -0.093 4.093 7 C -0.100 4.100 8 C -0.130 4.130 9 C 0.496 3.504 10 O -0.572 6.572 11 N -0.612 5.612 12 C 0.100 3.900 13 C -0.131 4.131 14 C -0.116 4.116 15 C -0.128 4.128 16 C 0.156 3.844 17 H 0.075 0.925 18 C -0.091 4.091 19 C 0.148 3.852 20 N -0.748 5.748 21 C -0.250 4.250 22 H 0.078 0.922 23 C -0.083 4.083 24 N -0.973 5.973 25 Si 0.983 3.017 26 H -0.275 1.275 27 H -0.293 1.293 28 H -0.275 1.275 29 H 0.048 0.952 30 H 0.107 0.893 31 H 0.048 0.952 32 H 0.418 0.582 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.116 0.884 40 H 0.111 0.889 41 H 0.083 0.917 42 H 0.110 0.890 43 H 0.060 0.940 44 H 0.102 0.898 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.051 0.949 48 H 0.071 0.929 49 H 0.040 0.960 50 H 0.064 0.936 51 H 0.017 0.983 52 H 0.022 0.978 53 H 0.370 0.630 54 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.136 11.873 -2.648 28.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.382 5.382 3 C 0.295 3.705 4 O -0.467 6.467 5 C -0.180 4.180 6 C -0.131 4.131 7 C -0.138 4.138 8 C -0.170 4.170 9 C 0.287 3.713 10 O -0.452 6.452 11 N -0.345 5.345 12 C -0.021 4.021 13 C -0.169 4.169 14 C -0.153 4.153 15 C -0.167 4.167 16 C 0.052 3.948 17 H 0.093 0.907 18 C -0.129 4.129 19 C 0.021 3.979 20 N -0.390 5.390 21 C -0.382 4.382 22 H 0.096 0.904 23 C -0.274 4.274 24 N -0.623 5.623 25 Si 0.811 3.189 26 H -0.201 1.201 27 H -0.219 1.219 28 H -0.201 1.201 29 H 0.067 0.933 30 H 0.126 0.874 31 H 0.067 0.933 32 H 0.255 0.745 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.134 0.866 40 H 0.130 0.870 41 H 0.101 0.899 42 H 0.128 0.872 43 H 0.079 0.921 44 H 0.120 0.880 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.070 0.930 48 H 0.089 0.911 49 H 0.059 0.941 50 H 0.083 0.917 51 H 0.035 0.965 52 H 0.040 0.960 53 H 0.201 0.799 54 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -26.111 12.131 -2.635 28.912 hybrid contribution 1.139 -1.346 0.228 1.778 sum -24.973 10.785 -2.407 27.308 Atomic orbital electron populations 1.21641 0.79225 1.04030 1.01272 1.45867 1.08361 1.09029 1.74939 1.21213 0.91305 0.83438 0.74546 1.90675 1.71605 1.32955 1.51486 1.21717 0.89861 1.00198 1.06200 1.21223 0.93462 0.95304 1.03111 1.21277 0.94705 0.95300 1.02517 1.21744 0.89203 0.99953 1.06084 1.21512 0.91677 0.83012 0.75146 1.90834 1.70148 1.33436 1.50776 1.48335 1.06472 1.07213 1.72491 1.22176 0.97977 0.82337 0.99595 1.21999 0.95757 1.00829 0.98295 1.21528 0.95772 0.95074 1.02969 1.21983 1.01241 0.96305 0.97155 1.21097 0.80079 0.94788 0.98844 0.90736 1.21903 0.92879 0.96317 1.01836 1.20975 0.93746 0.86064 0.97111 1.42628 1.05000 1.03428 1.87956 1.19675 0.85294 0.92543 1.40662 0.90427 1.25740 1.02792 0.95341 1.03576 1.69871 1.35274 0.98267 1.58922 0.85080 0.79185 0.76332 0.78353 1.20089 1.21922 1.20113 0.93288 0.87426 0.93346 0.74537 0.87144 0.87346 0.91368 0.91628 0.92668 0.92255 0.86607 0.87038 0.89894 0.87226 0.92126 0.87984 0.90672 0.90847 0.93046 0.91068 0.94109 0.91702 0.96491 0.95990 0.79904 0.93954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.70 127.77 1.37 2.19 16 2 N -0.73 -8.34 5.71 -484.54 -2.77 -11.10 16 3 C 0.51 8.95 7.83 87.66 0.69 9.63 16 4 O -0.59 -15.34 15.98 -3.02 -0.05 -15.38 16 5 C -0.14 -1.93 5.70 29.85 0.17 -1.76 16 6 C -0.09 -1.51 4.50 30.59 0.14 -1.37 16 7 C -0.10 -1.95 4.50 30.60 0.14 -1.81 16 8 C -0.13 -2.29 4.06 29.85 0.12 -2.17 16 9 C 0.50 13.61 7.53 87.65 0.66 14.27 16 10 O -0.57 -22.03 11.53 -3.04 -0.04 -22.07 16 11 N -0.61 -14.43 2.97 -794.21 -2.36 -16.79 16 12 C 0.10 1.35 6.38 86.51 0.55 1.90 16 13 C -0.13 -1.61 6.10 30.82 0.19 -1.42 16 14 C -0.12 -1.85 5.88 30.62 0.18 -1.67 16 15 C -0.13 -3.14 4.83 30.67 0.15 -3.00 16 16 C 0.16 4.48 3.02 44.98 0.14 4.61 16 17 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 18 C -0.09 -3.67 3.29 30.59 0.10 -3.57 16 19 C 0.15 6.75 5.74 86.38 0.50 7.25 16 20 N -0.75 -43.23 5.60 -343.46 -1.92 -45.16 16 21 C -0.25 -15.18 9.99 84.03 0.84 -14.34 16 22 H 0.08 4.45 7.83 -2.91 -0.02 4.42 16 23 C -0.08 -5.09 5.50 84.86 0.47 -4.62 16 24 N -0.97 -63.90 13.06 21.65 0.28 -63.61 16 25 Si 0.98 48.47 29.55 68.60 2.03 50.49 16 26 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 27 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 28 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 29 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.42 2.20 8.83 -92.71 -0.82 1.38 16 33 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 1.14 8.10 -2.39 -0.02 1.12 16 36 H 0.06 1.13 8.10 -2.38 -0.02 1.11 16 37 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 38 H 0.06 1.31 8.10 -2.39 -0.02 1.30 16 39 H 0.12 1.45 7.71 -2.39 -0.02 1.43 16 40 H 0.11 1.52 7.93 -2.39 -0.02 1.50 16 41 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.11 0.95 5.93 -2.39 -0.01 0.93 16 43 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.07 1.86 6.87 -2.38 -0.02 1.84 16 49 H 0.04 1.81 7.24 -2.39 -0.02 1.80 16 50 H 0.06 3.00 6.23 -2.39 -0.01 2.98 16 51 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 52 H 0.02 0.98 6.85 -2.39 -0.02 0.96 16 53 H 0.37 23.24 7.67 -92.70 -0.71 22.53 16 54 H 0.25 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -86.34 420.91 0.92 -85.42 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: -0.65 Total: 34.09 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 6.39 Total: 4.11 kcal Atomic # 7 Polarization: -129.89 SS G_CDS: -6.76 Total: -136.66 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -0.08 Total: -37.45 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 2.03 Total: 50.49 kcal Total: -86.34 0.92 -85.42 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698922830.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.915 kcal (2) G-P(sol) polarization free energy of solvation -86.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds