Wall clock time and date at job start Sat Apr 11 2020 05:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34772 * 119.99826 * 2 1 4 4 O 1.21284 * 120.00103 * 359.72163 * 3 2 1 5 5 C 1.50700 * 120.00177 * 179.72661 * 3 2 1 6 6 C 1.53005 * 109.47195 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.46863 * 179.97438 * 6 5 3 8 8 C 1.53003 * 109.46838 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.46941 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00229 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99953 * 180.02562 * 9 8 7 12 12 C 1.46923 * 120.62791 * 354.86683 * 11 9 8 13 13 C 1.53191 * 108.77384 * 233.58130 * 12 11 9 14 14 C 1.53038 * 109.31886 * 305.36870 * 13 12 11 15 15 C 1.53041 * 109.53775 * 61.36036 * 14 13 12 16 16 C 1.46923 * 120.62845 * 174.58564 * 11 9 8 17 17 H 1.09001 * 109.58839 * 246.19891 * 16 11 9 18 18 C 1.52997 * 109.58864 * 6.63206 * 16 11 9 19 19 C 1.53004 * 109.47197 * 181.23121 * 18 16 11 20 20 N 1.46494 * 109.47257 * 174.73782 * 19 18 16 21 21 C 1.36940 * 120.00485 * 179.97438 * 20 19 18 22 22 H 1.08005 * 119.99354 * 0.02562 * 21 20 19 23 23 C 1.38806 * 120.00828 * 179.97438 * 21 20 19 24 24 N 1.31619 * 119.99499 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00465 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47236 * 90.00341 * 25 23 21 27 27 H 1.48508 * 109.47081 * 210.00443 * 25 23 21 28 28 H 1.48498 * 109.46730 * 329.99853 * 25 23 21 29 29 H 1.09000 * 109.47234 * 60.00168 * 1 2 3 30 30 H 1.09001 * 109.46457 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47256 * 299.99820 * 1 2 3 32 32 H 0.96995 * 120.00257 * 179.72507 * 2 1 3 33 33 H 1.09003 * 109.46917 * 299.99761 * 5 3 2 34 34 H 1.08995 * 109.47418 * 59.99818 * 5 3 2 35 35 H 1.09003 * 109.46876 * 299.99642 * 6 5 3 36 36 H 1.08995 * 109.47203 * 59.99543 * 6 5 3 37 37 H 1.09003 * 109.47200 * 299.99588 * 7 6 5 38 38 H 1.09004 * 109.47225 * 60.00007 * 7 6 5 39 39 H 1.08995 * 109.47483 * 300.00206 * 8 7 6 40 40 H 1.09004 * 109.46894 * 60.00187 * 8 7 6 41 41 H 1.08992 * 109.58832 * 353.37334 * 12 11 9 42 42 H 1.09006 * 109.58547 * 113.65664 * 12 11 9 43 43 H 1.09001 * 109.49668 * 65.31953 * 13 12 11 44 44 H 1.09002 * 109.49743 * 185.41332 * 13 12 11 45 45 H 1.08993 * 109.46484 * 181.38668 * 14 13 12 46 46 H 1.09002 * 109.45795 * 301.34847 * 14 13 12 47 47 H 1.09006 * 109.49577 * 58.59166 * 15 14 13 48 48 H 1.08998 * 109.49865 * 178.65422 * 15 14 13 49 49 H 1.09008 * 109.46903 * 301.22503 * 18 16 11 50 50 H 1.08994 * 109.47885 * 61.22784 * 18 16 11 51 51 H 1.08998 * 109.46899 * 294.73712 * 19 18 16 52 52 H 1.09007 * 109.47297 * 54.73925 * 19 18 16 53 53 H 0.97003 * 120.00561 * 0.02562 * 20 19 18 54 54 H 0.97001 * 120.00293 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 -0.0051 5 6 3.6458 1.1673 0.0062 6 6 4.1558 2.6099 0.0055 7 6 5.6858 2.6099 0.0125 8 6 6.1957 4.0524 0.0112 9 6 7.7027 4.0525 0.0187 10 8 8.3091 3.0022 0.0240 11 7 8.3765 5.2197 0.0194 12 6 7.6608 6.4973 -0.1001 13 6 8.2656 7.2945 -1.2601 14 6 9.7740 7.4368 -1.0445 15 6 10.4209 6.0501 -1.0224 16 6 9.8402 5.2390 0.1459 17 1 10.1192 5.7041 1.0914 18 6 10.3782 3.8076 0.0966 19 6 11.8994 3.8286 0.2593 20 7 12.4011 2.4545 0.3381 21 6 13.7427 2.2227 0.4856 22 1 14.4308 3.0531 0.5443 23 6 14.2181 0.9207 0.5608 24 7 13.3794 -0.0911 0.4898 25 14 16.0480 0.6047 0.7628 26 1 16.3838 0.5468 2.2082 27 1 16.4011 -0.6868 0.1204 28 1 16.8137 1.7028 0.1202 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.9500 -0.8400 0.0040 33 1 4.0055 0.6556 0.8990 34 1 4.0129 0.6514 -0.8809 35 1 3.7961 3.1219 -0.8870 36 1 3.7887 3.1254 0.8929 37 1 6.0451 2.0980 0.9053 38 1 6.0532 2.0942 -0.8748 39 1 5.8364 4.5640 -0.8817 40 1 5.8283 4.5684 0.8982 41 1 6.6058 6.3080 -0.2976 42 1 7.7636 7.0618 0.8267 43 1 8.0800 6.7703 -2.1976 44 1 7.8087 8.2834 -1.2991 45 1 10.2029 8.0248 -1.8558 46 1 9.9593 7.9391 -0.0950 47 1 10.2150 5.5376 -1.9622 48 1 11.4983 6.1533 -0.8927 49 1 9.9345 3.2246 0.9038 50 1 10.1215 3.3557 -0.8615 51 1 12.3494 4.3312 -0.5968 52 1 12.1598 4.3633 1.1728 53 1 11.7832 1.7086 0.2850 54 1 13.7115 -1.0010 0.5419 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698922831.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:14 Heat of formation + Delta-G solvation = -101.053123 kcal Electronic energy + Delta-G solvation = -29688.758174 eV Core-core repulsion = 25659.132585 eV Total energy + Delta-G solvation = -4029.625589 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.56558 -40.66986 -38.54280 -37.00297 -36.20926 -35.53825 -34.55782 -33.79847 -32.53303 -31.60992 -29.27739 -28.30601 -26.59921 -25.57001 -25.19484 -23.88705 -22.50608 -21.99692 -21.52393 -21.30654 -19.79596 -19.19349 -18.10402 -17.55214 -17.20457 -17.09278 -16.80131 -16.62524 -16.45058 -15.85469 -15.48412 -15.41866 -15.25327 -15.03172 -14.84825 -14.67986 -14.55679 -14.20904 -14.12897 -13.78833 -13.41017 -13.32043 -13.28024 -13.07106 -12.92338 -12.79421 -12.71135 -12.40638 -12.35249 -12.17405 -12.12212 -12.06103 -11.89264 -11.85085 -11.75994 -11.50472 -11.48323 -11.34734 -10.93442 -10.92579 -10.12059 -9.95687 -9.44803 -9.01835 -7.95298 -5.26104 1.44282 1.48387 1.56826 1.64470 1.75052 2.04296 2.35091 2.55170 3.36553 3.50623 3.78729 3.84721 3.88354 3.91008 3.98965 4.04952 4.12773 4.15811 4.28801 4.38581 4.40293 4.44168 4.52304 4.52890 4.57961 4.61012 4.62990 4.74259 4.75047 4.80943 4.83081 4.86950 4.89397 4.93756 4.94803 5.00132 5.08870 5.13542 5.18646 5.24755 5.34211 5.40709 5.41273 5.43907 5.49963 5.51712 5.53688 5.76365 6.25942 6.55205 6.55963 7.26942 7.30139 7.34901 8.07498 8.32013 9.28891 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.008830 B = 0.002271 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.180972 B =12326.973117 C =15337.924980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.730 5.730 3 C 0.507 3.493 4 O -0.587 6.587 5 C -0.140 4.140 6 C -0.093 4.093 7 C -0.100 4.100 8 C -0.130 4.130 9 C 0.495 3.505 10 O -0.572 6.572 11 N -0.612 5.612 12 C 0.101 3.899 13 C -0.131 4.131 14 C -0.116 4.116 15 C -0.129 4.129 16 C 0.155 3.845 17 H 0.078 0.922 18 C -0.087 4.087 19 C 0.147 3.853 20 N -0.748 5.748 21 C -0.249 4.249 22 H 0.078 0.922 23 C -0.083 4.083 24 N -0.973 5.973 25 Si 0.983 3.017 26 H -0.284 1.284 27 H -0.293 1.293 28 H -0.267 1.267 29 H 0.048 0.952 30 H 0.107 0.893 31 H 0.048 0.952 32 H 0.418 0.582 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.084 0.916 43 H 0.058 0.942 44 H 0.103 0.897 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.049 0.951 48 H 0.070 0.930 49 H 0.059 0.941 50 H 0.044 0.956 51 H 0.022 0.978 52 H 0.017 0.983 53 H 0.370 0.630 54 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.116 12.003 -2.415 28.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.382 5.382 3 C 0.295 3.705 4 O -0.467 6.467 5 C -0.180 4.180 6 C -0.131 4.131 7 C -0.138 4.138 8 C -0.170 4.170 9 C 0.285 3.715 10 O -0.451 6.451 11 N -0.345 5.345 12 C -0.021 4.021 13 C -0.169 4.169 14 C -0.153 4.153 15 C -0.167 4.167 16 C 0.051 3.949 17 H 0.096 0.904 18 C -0.125 4.125 19 C 0.020 3.980 20 N -0.390 5.390 21 C -0.380 4.380 22 H 0.096 0.904 23 C -0.275 4.275 24 N -0.624 5.624 25 Si 0.810 3.190 26 H -0.211 1.211 27 H -0.220 1.220 28 H -0.191 1.191 29 H 0.067 0.933 30 H 0.126 0.874 31 H 0.067 0.933 32 H 0.255 0.745 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.102 0.898 43 H 0.077 0.923 44 H 0.121 0.879 45 H 0.093 0.907 46 H 0.093 0.907 47 H 0.068 0.932 48 H 0.089 0.911 49 H 0.077 0.923 50 H 0.063 0.937 51 H 0.039 0.961 52 H 0.035 0.965 53 H 0.201 0.799 54 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -26.090 12.269 -2.410 28.931 hybrid contribution 1.142 -1.382 0.066 1.794 sum -24.948 10.886 -2.343 27.321 Atomic orbital electron populations 1.21642 0.79220 1.04031 1.01275 1.45868 1.08364 1.09028 1.74934 1.21213 0.91305 0.83439 0.74545 1.90677 1.71602 1.32955 1.51491 1.21719 0.89863 1.00204 1.06194 1.21224 0.93463 0.95296 1.03113 1.21278 0.94704 0.95315 1.02508 1.21747 0.89201 0.99936 1.06086 1.21514 0.91680 0.83014 0.75251 1.90854 1.70165 1.33457 1.50657 1.48331 1.06455 1.07207 1.72507 1.22076 0.97291 0.82843 0.99845 1.21920 0.95508 1.01474 0.97992 1.21524 0.95772 0.94983 1.03044 1.22062 1.00507 0.96907 0.97251 1.21220 0.79709 0.95014 0.98939 0.90437 1.21885 0.92747 0.95883 1.01981 1.20993 0.93928 0.85950 0.97154 1.42633 1.04957 1.03101 1.88316 1.19712 0.85257 0.92341 1.40732 0.90411 1.25736 1.02784 0.95341 1.03620 1.69877 1.35182 0.98124 1.59174 0.85011 0.79237 0.77104 0.77609 1.21125 1.21961 1.19127 0.93300 0.87428 0.93326 0.74537 0.87278 0.87224 0.91462 0.91527 0.92495 0.92450 0.86787 0.86843 0.87311 0.89785 0.92343 0.87885 0.90722 0.90743 0.93181 0.91138 0.92293 0.93713 0.96052 0.96469 0.79900 0.93963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.70 127.77 1.37 2.19 16 2 N -0.73 -8.34 5.71 -484.53 -2.77 -11.11 16 3 C 0.51 8.95 7.83 87.66 0.69 9.63 16 4 O -0.59 -15.33 15.98 -3.04 -0.05 -15.38 16 5 C -0.14 -1.93 5.70 29.85 0.17 -1.76 16 6 C -0.09 -1.51 4.50 30.60 0.14 -1.37 16 7 C -0.10 -1.95 4.50 30.60 0.14 -1.81 16 8 C -0.13 -2.29 4.10 29.85 0.12 -2.16 16 9 C 0.50 13.56 7.61 87.66 0.67 14.23 16 10 O -0.57 -22.02 11.39 -3.03 -0.03 -22.06 16 11 N -0.61 -14.39 2.97 -794.23 -2.36 -16.75 16 12 C 0.10 1.35 6.32 86.36 0.55 1.89 16 13 C -0.13 -1.63 6.08 30.67 0.19 -1.44 16 14 C -0.12 -1.86 5.88 30.62 0.18 -1.68 16 15 C -0.13 -3.17 4.93 30.82 0.15 -3.02 16 16 C 0.15 4.44 3.01 45.12 0.14 4.58 16 17 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 18 C -0.09 -3.49 3.24 30.59 0.10 -3.39 16 19 C 0.15 6.70 5.82 86.38 0.50 7.20 16 20 N -0.75 -43.25 5.60 -343.45 -1.92 -45.17 16 21 C -0.25 -15.11 9.99 84.03 0.84 -14.27 16 22 H 0.08 4.47 7.83 -2.91 -0.02 4.44 16 23 C -0.08 -5.11 5.50 84.86 0.47 -4.65 16 24 N -0.97 -63.95 13.06 21.65 0.28 -63.66 16 25 Si 0.98 48.51 29.55 68.60 2.03 50.54 16 26 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 27 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 28 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.42 2.20 8.83 -92.71 -0.82 1.38 16 33 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.11 1.22 8.14 -2.39 -0.02 1.21 16 35 H 0.07 1.13 8.10 -2.39 -0.02 1.11 16 36 H 0.07 1.13 8.10 -2.39 -0.02 1.11 16 37 H 0.06 1.29 8.10 -2.39 -0.02 1.28 16 38 H 0.06 1.29 8.10 -2.39 -0.02 1.27 16 39 H 0.11 1.46 7.48 -2.39 -0.02 1.44 16 40 H 0.11 1.49 8.11 -2.39 -0.02 1.47 16 41 H 0.11 0.94 5.96 -2.39 -0.01 0.93 16 42 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 44 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 48 H 0.07 1.84 6.93 -2.39 -0.02 1.82 16 49 H 0.06 2.70 6.35 -2.38 -0.02 2.69 16 50 H 0.04 2.01 7.12 -2.39 -0.02 1.99 16 51 H 0.02 0.96 6.91 -2.39 -0.02 0.94 16 52 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 53 H 0.37 23.26 7.67 -92.71 -0.71 22.55 16 54 H 0.25 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -86.49 421.07 0.93 -85.56 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: -0.65 Total: 33.87 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 6.40 Total: 4.16 kcal Atomic # 7 Polarization: -129.92 SS G_CDS: -6.76 Total: -136.69 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -0.08 Total: -37.44 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.03 Total: 50.54 kcal Total: -86.49 0.93 -85.56 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698922831.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.495 kcal (2) G-P(sol) polarization free energy of solvation -86.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds