Wall clock time and date at job start Sat Apr 11 2020 05:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34773 * 119.99754 * 2 1 4 4 O 1.21272 * 120.00549 * 359.97438 * 3 2 1 5 5 C 1.50709 * 119.99614 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.46706 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.46635 * 180.02562 * 6 5 3 8 8 C 1.50707 * 109.47117 * 179.97438 * 7 6 5 9 9 O 1.21285 * 119.99514 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00428 * 179.97438 * 8 7 6 11 11 C 1.46494 * 120.00177 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47314 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.46819 * 305.00102 * 12 11 10 14 14 C 1.53003 * 109.47012 * 64.99626 * 12 11 10 15 15 C 1.53004 * 109.47012 * 179.97438 * 14 12 11 16 16 C 1.52995 * 109.47249 * 300.00256 * 15 14 12 17 17 H 1.08999 * 109.47414 * 300.00424 * 16 15 14 18 18 C 1.52996 * 109.47350 * 179.97438 * 16 15 14 19 19 N 1.46504 * 109.46681 * 64.99926 * 18 16 15 20 20 C 1.36943 * 119.99781 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99788 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99622 * 180.27904 * 20 19 18 23 23 N 1.31614 * 120.00467 * 359.72375 * 22 20 19 24 24 Si 1.86801 * 119.99700 * 179.72266 * 22 20 19 25 25 H 1.48501 * 109.46896 * 89.99850 * 24 22 20 26 26 H 1.48499 * 109.47039 * 210.00011 * 24 22 20 27 27 H 1.48501 * 109.47275 * 329.99811 * 24 22 20 28 28 C 1.53002 * 109.46995 * 60.00122 * 16 15 14 29 29 C 1.52995 * 109.47249 * 184.99882 * 12 11 10 30 30 H 1.08998 * 109.47377 * 300.00346 * 1 2 3 31 31 H 1.08998 * 109.47110 * 60.00889 * 1 2 3 32 32 H 1.09006 * 109.46874 * 180.02562 * 1 2 3 33 33 H 0.97002 * 119.99994 * 179.97438 * 2 1 3 34 34 H 1.08998 * 109.47316 * 59.99810 * 5 3 2 35 35 H 1.09005 * 109.47178 * 299.99544 * 5 3 2 36 36 H 1.08998 * 109.47407 * 59.99842 * 6 5 3 37 37 H 1.09005 * 109.46911 * 299.99685 * 6 5 3 38 38 H 1.08998 * 109.47366 * 59.99800 * 7 6 5 39 39 H 1.08998 * 109.47331 * 299.99128 * 7 6 5 40 40 H 0.97002 * 119.99689 * 0.02562 * 10 8 7 41 41 H 1.08998 * 109.47048 * 60.00144 * 11 10 8 42 42 H 1.08998 * 109.47419 * 300.00066 * 11 10 8 43 43 H 1.09002 * 109.47209 * 300.00563 * 14 12 11 44 44 H 1.09000 * 109.46940 * 60.00550 * 14 12 11 45 45 H 1.08994 * 109.46688 * 180.02562 * 15 14 12 46 46 H 1.09000 * 109.46819 * 60.00476 * 15 14 12 47 47 H 1.09006 * 109.47179 * 305.00542 * 18 16 15 48 48 H 1.08997 * 109.47540 * 185.00005 * 18 16 15 49 49 H 0.97000 * 120.00410 * 0.02562 * 19 18 16 50 50 H 0.96995 * 120.00147 * 180.02562 * 23 22 20 51 51 H 1.09000 * 109.47257 * 59.99667 * 28 16 15 52 52 H 1.09002 * 109.47364 * 179.97438 * 28 16 15 53 53 H 1.09001 * 109.46802 * 60.00316 * 29 12 11 54 54 H 1.09000 * 109.47390 * 299.99870 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 0.0006 6 6 4.1558 2.6097 0.0011 7 6 5.6858 2.6097 0.0011 8 6 6.1882 4.0305 0.0009 9 8 5.4000 4.9523 0.0004 10 7 7.5132 4.2768 0.0014 11 6 8.0015 5.6580 0.0018 12 6 9.5316 5.6581 0.0017 13 1 9.8950 5.0683 0.8432 14 6 10.0414 5.0488 -1.3060 15 6 11.5715 5.0495 -1.3064 16 6 12.0809 6.4866 -1.1806 17 1 11.7171 7.0762 -2.0221 18 6 13.6109 6.4873 -1.1804 19 7 14.0995 6.0151 -2.4783 20 6 15.4459 5.9295 -2.7132 21 1 16.1475 6.2105 -1.9417 22 6 15.9088 5.4876 -3.9449 23 7 15.0538 5.1457 -4.8853 24 14 17.7454 5.3783 -4.2680 25 1 18.2371 4.0321 -3.8791 26 1 18.0083 5.6032 -5.7121 27 1 18.4509 6.4127 -3.4695 28 6 11.5711 7.0958 0.1271 29 6 10.0415 7.0950 0.1278 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.9500 -0.8401 0.0004 34 1 4.0096 0.6531 -0.8891 35 1 4.0089 0.6536 0.8909 36 1 3.7921 3.1234 0.8910 37 1 3.7928 3.1237 -0.8890 38 1 6.0491 2.0961 -0.8891 39 1 6.0492 2.0956 0.8909 40 1 8.1436 3.5395 0.0014 41 1 7.6380 6.1716 0.8918 42 1 7.6385 6.1721 -0.8881 43 1 9.6780 4.0251 -1.3959 44 1 9.6780 5.6386 -2.1475 45 1 11.9346 4.6159 -2.2381 46 1 11.9352 4.4600 -0.4648 47 1 13.9744 5.8267 -0.3931 48 1 13.9738 7.4994 -1.0018 49 1 13.4693 5.7630 -3.1713 50 1 15.3773 4.8366 -5.7459 51 1 11.9348 6.5063 0.9687 52 1 11.9344 8.1195 0.2170 53 1 9.6783 7.5289 1.0594 54 1 9.6781 7.6848 -0.7137 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699982893.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:34 Heat of formation + Delta-G solvation = -135.418676 kcal Electronic energy + Delta-G solvation = -28547.738759 eV Core-core repulsion = 24516.622968 eV Total energy + Delta-G solvation = -4031.115791 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.00032 -40.58108 -39.80201 -36.96248 -35.68161 -35.53476 -35.17688 -33.61671 -31.76269 -31.58453 -30.18524 -28.14841 -27.06603 -25.64806 -24.13010 -23.61095 -22.83093 -21.56209 -21.33670 -21.14448 -20.58754 -19.13474 -18.52833 -17.65784 -17.16909 -16.88085 -16.73687 -16.62149 -16.48527 -16.08948 -15.63643 -15.28252 -15.23872 -15.00263 -14.81368 -14.62570 -14.53517 -14.33426 -14.04044 -13.73768 -13.45932 -13.20757 -13.10413 -13.00064 -12.92357 -12.80997 -12.72624 -12.53867 -12.42963 -12.39268 -12.08483 -11.93353 -11.85834 -11.74563 -11.70055 -11.30214 -11.10300 -10.99652 -10.91595 -10.81088 -10.71153 -10.12012 -10.01994 -8.96969 -7.94135 -5.22309 1.47395 1.49133 1.57666 1.66847 1.72388 2.19215 2.46726 2.56924 3.39218 3.66852 3.73584 3.79834 3.84408 3.91874 4.00750 4.10091 4.10814 4.24640 4.34965 4.43344 4.44056 4.57008 4.58096 4.60579 4.64299 4.66411 4.66984 4.69114 4.73847 4.79342 4.81574 4.91314 4.95299 4.97252 5.07973 5.11642 5.19391 5.22734 5.25996 5.32646 5.35635 5.37682 5.44665 5.48083 5.49852 5.56162 5.62356 5.69285 6.28559 6.59597 6.63574 7.32058 7.34721 7.34755 8.12568 8.35899 9.29452 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018734 B = 0.001454 C = 0.001370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.234669 B =19249.924687 C =20434.790226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.725 5.725 3 C 0.498 3.502 4 O -0.597 6.597 5 C -0.129 4.129 6 C -0.088 4.088 7 C -0.130 4.130 8 C 0.501 3.499 9 O -0.596 6.596 10 N -0.718 5.718 11 C 0.128 3.872 12 C -0.084 4.084 13 H 0.093 0.907 14 C -0.105 4.105 15 C -0.103 4.103 16 C -0.086 4.086 17 H 0.051 0.949 18 C 0.154 3.846 19 N -0.744 5.744 20 C -0.247 4.247 21 H 0.073 0.927 22 C -0.075 4.075 23 N -0.969 5.969 24 Si 0.973 3.027 25 H -0.285 1.285 26 H -0.295 1.295 27 H -0.271 1.271 28 C -0.102 4.102 29 C -0.107 4.107 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.111 0.889 33 H 0.422 0.578 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.045 0.955 37 H 0.041 0.959 38 H 0.125 0.875 39 H 0.130 0.870 40 H 0.416 0.584 41 H 0.062 0.938 42 H 0.049 0.951 43 H 0.076 0.924 44 H 0.050 0.950 45 H 0.037 0.963 46 H 0.065 0.935 47 H 0.020 0.980 48 H 0.012 0.988 49 H 0.374 0.626 50 H 0.251 0.749 51 H 0.072 0.928 52 H 0.064 0.936 53 H 0.080 0.920 54 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.370 -14.178 15.127 31.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.378 5.378 3 C 0.286 3.714 4 O -0.478 6.478 5 C -0.169 4.169 6 C -0.127 4.127 7 C -0.169 4.169 8 C 0.289 3.711 9 O -0.477 6.477 10 N -0.371 5.371 11 C 0.004 3.996 12 C -0.102 4.102 13 H 0.111 0.889 14 C -0.143 4.143 15 C -0.141 4.141 16 C -0.105 4.105 17 H 0.070 0.930 18 C 0.028 3.972 19 N -0.387 5.387 20 C -0.379 4.379 21 H 0.091 0.909 22 C -0.267 4.267 23 N -0.620 5.620 24 Si 0.802 3.198 25 H -0.212 1.212 26 H -0.222 1.222 27 H -0.196 1.196 28 C -0.140 4.140 29 C -0.145 4.145 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.129 0.871 33 H 0.259 0.741 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.143 0.857 39 H 0.148 0.852 40 H 0.254 0.746 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.094 0.906 44 H 0.069 0.931 45 H 0.056 0.944 46 H 0.084 0.916 47 H 0.038 0.962 48 H 0.030 0.970 49 H 0.206 0.794 50 H 0.060 0.940 51 H 0.091 0.909 52 H 0.082 0.918 53 H 0.099 0.901 54 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -25.181 -12.766 15.187 32.058 hybrid contribution 1.184 -0.320 -1.006 1.586 sum -23.997 -13.086 14.181 30.793 Atomic orbital electron populations 1.21623 0.79654 1.04053 1.00970 1.45797 1.08085 1.08981 1.74944 1.21500 0.92024 0.83297 0.74572 1.90729 1.71941 1.33592 1.51504 1.21705 0.89122 0.98395 1.07654 1.20956 0.93898 0.95813 1.01998 1.21717 0.95823 0.91852 1.07557 1.21474 0.82062 0.92909 0.74632 1.90721 1.56670 1.48587 1.51681 1.46007 1.07042 1.09343 1.74698 1.21301 0.93830 0.83218 1.01275 1.21305 0.92345 0.97828 0.98745 0.88876 1.21553 0.94336 1.01242 0.97172 1.21415 0.95679 0.95781 1.01180 1.21239 0.93496 0.97149 0.98642 0.93001 1.20885 0.93524 0.95690 0.87150 1.42604 1.03766 1.79193 1.13106 1.19662 0.85044 1.35515 0.97684 0.90885 1.25545 1.01946 1.02830 0.96369 1.69814 1.34404 1.52509 1.05275 0.85149 0.80175 0.77924 0.76573 1.21218 1.22187 1.19580 1.21431 0.95559 1.00852 0.96129 1.21457 0.94772 0.95637 1.02597 0.93682 0.93810 0.87060 0.74113 0.85480 0.85179 0.93594 0.93964 0.85715 0.85218 0.74638 0.91939 0.93248 0.90574 0.93145 0.94366 0.91635 0.96203 0.96981 0.79390 0.94041 0.90937 0.91774 0.90098 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.68 10.70 127.77 1.37 2.05 16 2 N -0.73 -5.83 5.71 -484.52 -2.77 -8.59 16 3 C 0.50 7.69 7.83 87.66 0.69 8.38 16 4 O -0.60 -16.58 15.98 -3.01 -0.05 -16.63 16 5 C -0.13 -0.95 5.70 29.85 0.17 -0.78 16 6 C -0.09 -1.39 3.79 30.59 0.12 -1.28 16 7 C -0.13 -1.27 5.70 29.85 0.17 -1.10 16 8 C 0.50 9.80 7.83 87.66 0.69 10.49 16 9 O -0.60 -18.44 15.98 -3.05 -0.05 -18.49 16 10 N -0.72 -11.05 5.28 -463.06 -2.45 -13.50 16 11 C 0.13 2.38 5.06 86.38 0.44 2.82 16 12 C -0.08 -1.44 2.23 -10.79 -0.02 -1.46 16 13 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 14 C -0.11 -2.25 5.08 30.60 0.16 -2.09 16 15 C -0.10 -2.94 5.08 30.59 0.16 -2.78 16 16 C -0.09 -2.68 2.23 -10.80 -0.02 -2.70 16 17 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 18 C 0.15 6.17 5.65 86.38 0.49 6.66 16 19 N -0.74 -38.29 5.33 -343.44 -1.83 -40.12 16 20 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 21 H 0.07 3.99 7.83 -2.91 -0.02 3.96 16 22 C -0.07 -4.32 5.50 84.86 0.47 -3.86 16 23 N -0.97 -59.59 13.06 21.65 0.28 -59.31 16 24 Si 0.97 46.26 29.55 68.60 2.03 48.29 16 25 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 26 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 27 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 28 C -0.10 -2.34 5.20 30.58 0.16 -2.18 16 29 C -0.11 -2.02 5.20 30.58 0.16 -1.86 16 30 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.11 0.10 8.14 -2.38 -0.02 0.08 16 33 H 0.42 -0.07 8.83 -92.71 -0.82 -0.88 16 34 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.13 0.10 8.14 -2.38 -0.02 0.08 16 36 H 0.05 1.01 8.06 -2.39 -0.02 0.99 16 37 H 0.04 0.96 8.06 -2.38 -0.02 0.94 16 38 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.42 3.85 7.66 -92.71 -0.71 3.14 16 41 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 42 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.08 1.33 7.18 -2.39 -0.02 1.31 16 44 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.04 1.37 7.18 -2.39 -0.02 1.35 16 46 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 48 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 49 H 0.37 20.42 6.85 -92.71 -0.64 19.78 16 50 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 51 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 52 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 53 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 54 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -86.58 429.64 -0.10 -86.68 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: -1.28 Total: 24.56 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 6.01 Total: -2.87 kcal Atomic # 7 Polarization: -114.77 SS G_CDS: -6.76 Total: -121.53 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -0.10 Total: -35.12 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -86.58 -0.10 -86.68 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699982893.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.741 kcal (2) G-P(sol) polarization free energy of solvation -86.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds