Wall clock time and date at job start Sat Apr 11 2020 05:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.47180 * 2 1 4 4 C 1.42894 * 114.00150 * 175.15718 * 3 2 1 5 5 H 1.08996 * 109.47391 * 30.04678 * 4 3 2 6 6 C 1.50703 * 109.47009 * 270.04638 * 4 3 2 7 7 O 1.21277 * 119.99990 * 0.02562 * 6 4 3 8 8 N 1.34777 * 120.00055 * 179.97438 * 6 4 3 9 9 C 1.46492 * 120.00109 * 180.02562 * 8 6 4 10 10 C 1.53002 * 109.47258 * 180.02562 * 9 8 6 11 11 N 1.46904 * 109.47262 * 179.97438 * 10 9 8 12 12 C 1.46857 * 110.99910 * 45.78847 * 11 10 9 13 13 C 1.53034 * 109.52366 * 185.83955 * 12 11 10 14 14 C 1.53123 * 109.27848 * 300.82262 * 13 12 11 15 15 N 1.46499 * 109.57482 * 177.59005 * 14 13 12 16 16 C 1.36935 * 119.99963 * 85.28458 * 15 14 13 17 17 H 1.08009 * 119.99947 * 0.02562 * 16 15 14 18 18 C 1.38805 * 120.00131 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00283 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00253 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47814 * 89.99865 * 20 18 16 22 22 H 1.48502 * 109.47283 * 210.00058 * 20 18 16 23 23 H 1.48503 * 109.47002 * 329.99541 * 20 18 16 24 24 C 1.53124 * 109.15845 * 57.65208 * 14 13 12 25 25 C 1.46846 * 110.99973 * 169.99689 * 11 10 9 26 26 C 1.53003 * 109.47191 * 150.04750 * 4 3 2 27 27 C 1.53000 * 117.49813 * 3.61066 * 26 4 3 28 28 C 1.53000 * 117.49938 * 294.94955 * 26 4 3 29 29 H 1.09003 * 109.46721 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46930 * 300.00393 * 1 2 3 31 31 H 1.08992 * 109.47140 * 60.00340 * 1 2 3 32 32 H 1.08996 * 109.47175 * 239.99705 * 2 1 3 33 33 H 1.09004 * 109.46985 * 119.99327 * 2 1 3 34 34 H 0.96998 * 119.99951 * 0.02562 * 8 6 4 35 35 H 1.09004 * 109.47246 * 300.00308 * 9 8 6 36 36 H 1.09001 * 109.47183 * 60.00409 * 9 8 6 37 37 H 1.08996 * 109.47328 * 299.99988 * 10 9 8 38 38 H 1.08992 * 109.47052 * 60.00068 * 10 9 8 39 39 H 1.08997 * 109.46126 * 305.85649 * 12 11 10 40 40 H 1.08999 * 109.45603 * 65.82604 * 12 11 10 41 41 H 1.08995 * 109.50483 * 180.88076 * 13 12 11 42 42 H 1.08998 * 109.49979 * 60.75758 * 13 12 11 43 43 H 1.09004 * 109.52039 * 297.75125 * 14 13 12 44 44 H 0.97004 * 119.99983 * 265.28497 * 15 14 13 45 45 H 0.96998 * 120.00344 * 180.02562 * 19 18 16 46 46 H 1.09004 * 109.49731 * 182.40291 * 24 14 13 47 47 H 1.08998 * 109.49982 * 62.29125 * 24 14 13 48 48 H 1.08997 * 109.46378 * 294.17683 * 25 11 10 49 49 H 1.08998 * 109.46040 * 54.16276 * 25 11 10 50 50 H 1.09005 * 115.54947 * 149.27708 * 26 4 3 51 51 H 1.08993 * 117.49986 * 0.02562 * 27 26 4 52 52 H 1.09007 * 117.49720 * 145.01958 * 27 26 4 53 53 H 1.08998 * 117.49751 * 214.98160 * 28 26 4 54 54 H 1.08997 * 117.49519 * 359.97438 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4265 1.4617 0.1102 5 1 3.8976 0.5900 -0.3439 6 6 3.8127 1.5407 1.5648 7 8 2.9562 1.5023 2.4225 8 7 5.1100 1.6530 1.9124 9 6 5.4855 1.7293 3.3263 10 6 7.0060 1.8519 3.4444 11 7 7.3825 1.9290 4.8623 12 6 6.6726 0.9139 5.6512 13 6 6.9762 1.1168 7.1374 14 6 8.4861 1.0032 7.3650 15 7 8.7900 1.2533 8.7761 16 6 8.7157 0.2310 9.6841 17 1 8.4334 -0.7599 9.3598 18 6 9.0040 0.4678 11.0211 19 7 9.3484 1.6751 11.4163 20 14 8.9034 -0.9270 12.2596 21 1 10.2221 -1.6033 12.3520 22 1 8.5325 -0.3817 13.5902 23 1 7.8752 -1.9048 11.8214 24 6 9.2047 2.0387 6.4955 25 6 8.8366 1.8091 5.0279 26 6 3.8937 2.7276 -0.6110 27 6 2.8187 3.6379 -1.2083 28 6 3.7003 2.7888 -2.1275 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 5.7950 1.6833 1.2264 35 1 5.0146 2.6010 3.7808 36 1 5.1524 0.8274 3.8399 37 1 7.4772 0.9805 2.9899 38 1 7.3387 2.7540 2.9310 39 1 5.5998 1.0084 5.4835 40 1 7.0019 -0.0791 5.3455 41 1 6.4617 0.3537 7.7214 42 1 6.6349 2.1046 7.4469 43 1 8.8214 0.0026 7.0919 44 1 9.0438 2.1431 9.0673 45 1 9.5503 1.8405 12.3505 46 1 10.2825 1.9342 6.6210 47 1 8.8984 3.0409 6.7951 48 1 9.1556 0.8118 4.7252 49 1 9.3354 2.5539 4.4078 50 1 4.7830 3.2032 -0.1974 51 1 1.7787 3.3351 -1.0870 52 1 3.0010 4.7124 -1.1879 53 1 4.4622 3.3050 -2.7116 54 1 3.2406 1.9270 -2.6114 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699993914.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:56 Heat of formation + Delta-G solvation = -65.978412 kcal Electronic energy + Delta-G solvation = -29640.787323 eV Core-core repulsion = 25612.682688 eV Total energy + Delta-G solvation = -4028.104635 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.32976 -40.20571 -38.98810 -37.34452 -37.03898 -35.71350 -34.02801 -32.37467 -31.90625 -31.52862 -29.91600 -27.99372 -26.03576 -24.68290 -23.94148 -23.52243 -23.10603 -22.50792 -22.18761 -21.21946 -20.74501 -19.10457 -18.78146 -17.99952 -17.35867 -17.02167 -16.68999 -16.45125 -16.21938 -16.08521 -15.74629 -15.57607 -15.41793 -15.32590 -15.04225 -14.72829 -14.46585 -14.21866 -13.97448 -13.86770 -13.41764 -13.13356 -13.00641 -12.96535 -12.87578 -12.69978 -12.53509 -12.37148 -12.34195 -12.22081 -12.17996 -12.16096 -12.05113 -11.77259 -11.71314 -11.51411 -11.26041 -11.17504 -11.08717 -10.85680 -10.26958 -10.16298 -9.26121 -8.99963 -7.94630 -5.22986 1.45236 1.47061 1.47346 1.55350 1.90590 2.55105 2.58526 2.93704 3.03237 3.37903 3.56778 3.72646 3.79842 3.81880 3.91186 4.00781 4.07215 4.12426 4.16396 4.19077 4.23568 4.27306 4.32835 4.36234 4.44166 4.47671 4.49636 4.54782 4.69399 4.74162 4.78612 4.86594 4.87682 4.92583 4.95977 4.96859 4.99131 5.03065 5.11277 5.18701 5.22453 5.24167 5.35003 5.37188 5.43350 5.48701 5.59843 6.02909 6.09536 6.16014 6.28053 6.50554 7.18391 7.33232 8.10574 8.33782 9.28905 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019610 B = 0.001784 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.529084 B =15689.863611 C =16734.073919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.050 3.950 3 O -0.373 6.373 4 C 0.109 3.891 5 H 0.118 0.882 6 C 0.489 3.511 7 O -0.576 6.576 8 N -0.709 5.709 9 C 0.120 3.880 10 C 0.055 3.945 11 N -0.545 5.545 12 C 0.063 3.937 13 C -0.124 4.124 14 C 0.171 3.829 15 N -0.738 5.738 16 C -0.238 4.238 17 H 0.073 0.927 18 C -0.078 4.078 19 N -0.970 5.970 20 Si 0.972 3.028 21 H -0.286 1.286 22 H -0.296 1.296 23 H -0.271 1.271 24 C -0.114 4.114 25 C 0.072 3.928 26 C -0.168 4.168 27 C -0.177 4.177 28 C -0.147 4.147 29 H 0.089 0.911 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.036 0.964 34 H 0.419 0.581 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.037 0.963 41 H 0.043 0.957 42 H 0.046 0.954 43 H 0.036 0.964 44 H 0.372 0.628 45 H 0.250 0.750 46 H 0.065 0.935 47 H 0.057 0.943 48 H 0.042 0.958 49 H 0.099 0.901 50 H 0.132 0.868 51 H 0.090 0.910 52 H 0.100 0.900 53 H 0.117 0.883 54 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.621 -0.602 -35.160 36.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.026 4.026 3 O -0.291 6.291 4 C 0.047 3.953 5 H 0.135 0.865 6 C 0.275 3.725 7 O -0.455 6.455 8 N -0.364 5.364 9 C -0.005 4.005 10 C -0.073 4.073 11 N -0.271 5.271 12 C -0.066 4.066 13 C -0.164 4.164 14 C 0.063 3.937 15 N -0.377 5.377 16 C -0.370 4.370 17 H 0.091 0.909 18 C -0.270 4.270 19 N -0.621 5.621 20 Si 0.801 3.199 21 H -0.213 1.213 22 H -0.223 1.223 23 H -0.196 1.196 24 C -0.152 4.152 25 C -0.055 4.055 26 C -0.187 4.187 27 C -0.214 4.214 28 C -0.184 4.184 29 H 0.107 0.893 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.256 0.744 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.120 0.880 39 H 0.096 0.904 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.203 0.797 45 H 0.059 0.941 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.060 0.940 49 H 0.118 0.882 50 H 0.150 0.850 51 H 0.108 0.892 52 H 0.118 0.882 53 H 0.135 0.865 54 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.527 -0.207 -34.322 35.901 hybrid contribution 0.545 -1.189 1.327 1.863 sum -9.982 -1.396 -32.996 34.501 Atomic orbital electron populations 1.21726 0.92982 1.03287 1.02495 1.22726 0.96589 0.82842 1.00443 1.87987 1.19706 1.27953 1.93422 1.21509 0.83547 1.00671 0.89533 0.86455 1.21892 0.82446 0.75355 0.92757 1.90723 1.50871 1.50643 1.53264 1.45790 1.07750 1.74255 1.08637 1.21351 0.95638 1.01532 0.81938 1.22225 0.93015 1.03150 0.88878 1.61916 1.07308 1.49498 1.08344 1.22091 0.98815 0.92893 0.92784 1.22107 0.98756 1.00518 0.95040 1.20493 0.92864 0.96716 0.83638 1.42648 1.82076 1.09482 1.03504 1.19602 1.37033 0.91087 0.89255 0.90941 1.25556 1.03377 0.98981 0.99131 1.69821 1.55056 1.21478 1.15719 0.85163 0.77786 0.78632 0.78338 1.21257 1.22278 1.19640 1.21749 0.99678 0.99003 0.94790 1.21998 0.86844 1.01019 0.95682 1.22362 1.02256 0.97156 0.96899 1.22910 0.96940 0.97566 1.03951 1.23063 1.02519 1.02546 0.90268 0.89263 0.93633 0.91241 0.90704 0.94590 0.74374 0.92550 0.92516 0.92422 0.87953 0.90400 0.94498 0.93856 0.93516 0.94575 0.79657 0.94092 0.91606 0.92407 0.94011 0.88227 0.84985 0.89181 0.88207 0.86515 0.88219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 10.28 71.98 0.74 -1.27 16 2 C 0.05 0.75 6.40 71.98 0.46 1.21 16 3 O -0.37 -7.00 7.89 -129.94 -1.03 -8.03 16 4 C 0.11 1.54 2.87 29.85 0.09 1.63 16 5 H 0.12 0.97 7.83 -2.39 -0.02 0.95 16 6 C 0.49 10.11 7.16 87.66 0.63 10.74 16 7 O -0.58 -18.37 16.47 16.02 0.26 -18.11 16 8 N -0.71 -10.43 5.30 -463.07 -2.46 -12.88 16 9 C 0.12 2.33 4.92 86.38 0.43 2.76 16 10 C 0.05 0.88 5.39 86.30 0.46 1.35 16 11 N -0.54 -13.05 4.81 -896.36 -4.31 -17.36 16 12 C 0.06 1.77 4.85 86.32 0.42 2.18 16 13 C -0.12 -4.63 5.68 30.65 0.17 -4.45 16 14 C 0.17 6.90 2.84 45.07 0.13 7.03 16 15 N -0.74 -38.33 5.13 -322.55 -1.65 -39.98 16 16 C -0.24 -13.53 9.93 84.03 0.83 -12.70 16 17 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 18 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 19 N -0.97 -60.66 13.06 21.65 0.28 -60.37 16 20 Si 0.97 47.17 29.55 68.60 2.03 49.19 16 21 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 22 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 23 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 24 C -0.11 -3.68 5.57 30.65 0.17 -3.51 16 25 C 0.07 1.70 5.42 86.32 0.47 2.17 16 26 C -0.17 -1.76 5.61 -10.79 -0.06 -1.82 16 27 C -0.18 -2.18 9.87 30.62 0.30 -1.88 16 28 C -0.15 -1.07 10.24 30.62 0.31 -0.76 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.04 0.65 8.12 -2.38 -0.02 0.63 16 34 H 0.42 2.83 8.14 -92.71 -0.76 2.07 16 35 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.06 1.32 6.21 -2.39 -0.01 1.30 16 37 H 0.06 0.75 8.08 -2.39 -0.02 0.73 16 38 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 2.15 5.81 -2.39 -0.01 2.13 16 40 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.04 1.49 8.08 -2.39 -0.02 1.47 16 44 H 0.37 20.79 7.80 -92.71 -0.72 20.07 16 45 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 46 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 47 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.10 1.82 8.12 -2.39 -0.02 1.80 16 50 H 0.13 1.00 7.64 -2.38 -0.02 0.98 16 51 H 0.09 1.47 7.02 -2.39 -0.02 1.45 16 52 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 53 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 54 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -76.55 427.20 -1.45 -78.00 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: -0.60 Total: 31.01 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 6.02 Total: -1.46 kcal Atomic # 7 Polarization: -122.47 SS G_CDS: -8.13 Total: -130.60 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.76 Total: -26.14 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.19 kcal Total: -76.55 -1.45 -78.00 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699993914.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.017 kcal (2) G-P(sol) polarization free energy of solvation -76.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds