Wall clock time and date at job start Sat Apr 11 2020 05:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 120.00166 * 2 1 4 4 N 1.34777 * 119.99624 * 180.02562 * 2 1 3 5 5 C 1.46507 * 119.99764 * 179.97438 * 4 2 1 6 6 H 1.08999 * 109.46758 * 325.00058 * 5 4 2 7 7 C 1.50693 * 109.47095 * 204.99630 * 5 4 2 8 8 O 1.21280 * 120.00047 * 345.60398 * 7 5 4 9 9 N 1.34773 * 120.00092 * 165.59712 * 7 5 4 10 10 C 1.46506 * 120.00005 * 176.52147 * 9 7 5 11 11 H 1.08995 * 110.63702 * 36.69363 * 10 9 7 12 12 C 1.54326 * 110.72340 * 273.54979 * 10 9 7 13 13 N 1.47016 * 107.26885 * 263.65464 * 12 10 9 14 14 C 1.36949 * 125.64425 * 181.07921 * 13 12 10 15 15 H 1.08001 * 119.99609 * 179.97438 * 14 13 12 16 16 C 1.38805 * 119.99687 * 359.97438 * 14 13 12 17 17 N 1.31615 * 120.00739 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99514 * 179.97438 * 16 14 13 19 19 H 1.48509 * 109.46938 * 90.00304 * 18 16 14 20 20 H 1.48500 * 109.46878 * 209.99515 * 18 16 14 21 21 H 1.48497 * 109.47360 * 329.99898 * 18 16 14 22 22 C 1.47424 * 108.70674 * 1.05744 * 13 12 10 23 23 C 1.54903 * 104.92862 * 335.82044 * 22 13 12 24 24 C 1.52992 * 111.00356 * 155.14099 * 23 22 13 25 25 C 1.53005 * 111.00152 * 278.98952 * 23 22 13 26 26 C 1.53002 * 109.47232 * 84.99532 * 5 4 2 27 27 C 1.52999 * 109.47144 * 177.46325 * 26 5 4 28 28 C 1.53000 * 109.47150 * 297.46365 * 26 5 4 29 29 C 1.53001 * 109.47001 * 57.46027 * 26 5 4 30 30 H 1.09005 * 109.47320 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46692 * 299.99286 * 1 2 3 32 32 H 1.08996 * 109.47218 * 59.99758 * 1 2 3 33 33 H 0.96996 * 120.00132 * 359.97438 * 4 2 1 34 34 H 0.96997 * 119.99988 * 356.53317 * 9 7 5 35 35 H 1.08994 * 109.88173 * 144.23169 * 12 10 9 36 36 H 1.09005 * 110.00498 * 23.14290 * 12 10 9 37 37 H 0.96993 * 120.00816 * 180.02562 * 17 16 14 38 38 H 1.09001 * 110.36133 * 94.71305 * 22 13 12 39 39 H 1.09003 * 110.36605 * 216.92036 * 22 13 12 40 40 H 1.09004 * 109.47763 * 61.45349 * 24 23 22 41 41 H 1.09005 * 109.47029 * 181.45317 * 24 23 22 42 42 H 1.09001 * 109.47125 * 301.44999 * 24 23 22 43 43 H 1.09003 * 109.47402 * 58.54567 * 25 23 22 44 44 H 1.09001 * 109.47001 * 178.55025 * 25 23 22 45 45 H 1.09005 * 109.47011 * 298.54561 * 25 23 22 46 46 H 1.08995 * 109.47119 * 66.52514 * 27 26 5 47 47 H 1.09000 * 109.47116 * 186.52691 * 27 26 5 48 48 H 1.09001 * 109.46961 * 306.52562 * 27 26 5 49 49 H 1.08997 * 109.47369 * 60.00269 * 28 26 5 50 50 H 1.08998 * 109.47062 * 179.97438 * 28 26 5 51 51 H 1.08996 * 109.47081 * 300.00104 * 28 26 5 52 52 H 1.09001 * 109.46857 * 60.00364 * 29 26 5 53 53 H 1.09001 * 109.47157 * 179.97438 * 29 26 5 54 54 H 1.08997 * 109.47696 * 300.00289 * 29 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1673 -0.0011 6 1 4.0090 -0.3253 -0.5905 7 6 4.1479 -2.4548 -0.6019 8 8 3.3909 -3.3906 -0.7500 9 7 5.4383 -2.5664 -0.9748 10 6 5.9448 -3.8418 -1.4880 11 1 5.1876 -4.3403 -2.0930 12 6 6.4051 -4.7522 -0.3300 13 7 7.8577 -4.5766 -0.1877 14 6 8.6553 -5.2257 0.7168 15 1 9.7165 -5.0265 0.7415 16 6 8.0997 -6.1395 1.6016 17 7 6.8064 -6.3818 1.5718 18 14 9.1877 -7.0254 2.8349 19 1 9.2620 -6.2326 4.0885 20 1 8.6148 -8.3635 3.1288 21 1 10.5510 -7.1841 2.2680 22 6 8.3138 -3.5865 -1.1803 23 6 7.2500 -3.6302 -2.3053 24 6 7.2106 -2.3082 -3.0745 25 6 7.5010 -4.8056 -3.2521 26 6 4.1565 -1.0418 1.4357 27 6 5.6852 -1.1054 1.4412 28 6 3.6996 0.2944 2.0245 29 6 3.5953 -2.1889 2.2784 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 1.6958 -2.0072 -0.0005 34 1 6.0316 -1.8024 -0.9033 35 1 6.1785 -5.7924 -0.5638 36 1 5.9043 -4.4625 0.5938 37 1 6.4181 -7.0201 2.1904 38 1 8.3536 -2.5928 -0.7341 39 1 9.2921 -3.8651 -1.5721 40 1 8.1783 -2.1322 -3.5444 41 1 6.4377 -2.3570 -3.8415 42 1 6.9878 -1.4935 -2.3855 43 1 7.4812 -5.7377 -2.6873 44 1 6.7250 -4.8279 -4.0173 45 1 8.4755 -4.6886 -3.7262 46 1 6.0872 -0.2253 0.9394 47 1 6.0440 -1.1328 2.4700 48 1 6.0133 -2.0035 0.9179 49 1 2.6105 0.3398 2.0207 50 1 4.0629 0.3836 3.0482 51 1 4.0993 1.1116 1.4242 52 1 3.9208 -3.1408 1.8590 53 1 3.9594 -2.0997 3.3020 54 1 2.5062 -2.1436 2.2746 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700575474.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:55 Heat of formation + Delta-G solvation = -72.209511 kcal Electronic energy + Delta-G solvation = -33073.995726 eV Core-core repulsion = 29045.620890 eV Total energy + Delta-G solvation = -4028.374836 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -42.08894 -40.65349 -39.42008 -37.73982 -35.74413 -34.89760 -34.29476 -32.58363 -31.05258 -30.04398 -28.46651 -28.27242 -27.95700 -27.49897 -27.17554 -25.02663 -22.50164 -21.75210 -21.48672 -20.45349 -19.83737 -18.66865 -18.63448 -17.76937 -17.18544 -17.09415 -16.81890 -16.41050 -15.92858 -15.66309 -15.42812 -15.30965 -14.86034 -14.77726 -14.59836 -14.44649 -14.03913 -13.80369 -13.70872 -13.46171 -13.31027 -13.24358 -13.13395 -13.05268 -12.98797 -12.85877 -12.78176 -12.67718 -12.59276 -12.56299 -12.28084 -12.11295 -11.89865 -11.83886 -11.77072 -11.70267 -11.48220 -11.29708 -10.94241 -10.89057 -10.69249 -10.06390 -9.93011 -8.84718 -7.80806 -5.16128 1.45001 1.45869 1.50412 1.54544 1.65915 1.87953 2.49102 2.51827 3.37568 3.46272 3.56085 3.62334 3.74600 3.79851 3.95048 3.97734 4.03840 4.07924 4.30922 4.40080 4.42445 4.53634 4.53775 4.66088 4.69402 4.70451 4.74436 4.82941 4.84984 4.88923 4.93702 4.96551 4.98662 5.04303 5.07743 5.08903 5.13381 5.18176 5.22703 5.27650 5.30068 5.35697 5.38680 5.44172 5.49215 5.56332 5.73056 5.80175 6.20920 6.48845 6.54827 7.11298 7.17415 7.24053 7.81402 8.45260 9.27917 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012663 B = 0.003998 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.601365 B = 7002.539055 C = 8127.026964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.510 3.490 3 O -0.577 6.577 4 N -0.707 5.707 5 C 0.145 3.855 6 H 0.114 0.886 7 C 0.515 3.485 8 O -0.569 6.569 9 N -0.694 5.694 10 C 0.136 3.864 11 H 0.079 0.921 12 C 0.197 3.803 13 N -0.617 5.617 14 C -0.234 4.234 15 H 0.084 0.916 16 C -0.063 4.063 17 N -0.948 5.948 18 Si 0.970 3.030 19 H -0.289 1.289 20 H -0.300 1.300 21 H -0.267 1.267 22 C 0.138 3.862 23 C -0.075 4.075 24 C -0.126 4.126 25 C -0.122 4.122 26 C -0.063 4.063 27 C -0.162 4.162 28 C -0.117 4.117 29 C -0.135 4.135 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.413 0.587 34 H 0.410 0.590 35 H 0.003 0.997 36 H 0.007 0.993 37 H 0.242 0.758 38 H 0.030 0.970 39 H 0.046 0.954 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.030 0.970 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.057 0.943 48 H 0.056 0.944 49 H 0.052 0.948 50 H 0.057 0.943 51 H 0.060 0.940 52 H 0.026 0.974 53 H 0.057 0.943 54 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.193 14.446 -6.808 17.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.299 3.701 3 O -0.457 6.457 4 N -0.361 5.361 5 C 0.036 3.964 6 H 0.132 0.868 7 C 0.301 3.699 8 O -0.449 6.449 9 N -0.347 5.347 10 C 0.030 3.970 11 H 0.097 0.903 12 C 0.071 3.929 13 N -0.343 5.343 14 C -0.363 4.363 15 H 0.102 0.898 16 C -0.256 4.256 17 N -0.598 5.598 18 Si 0.799 3.201 19 H -0.216 1.216 20 H -0.227 1.227 21 H -0.192 1.192 22 C 0.013 3.987 23 C -0.077 4.077 24 C -0.183 4.183 25 C -0.180 4.180 26 C -0.065 4.065 27 C -0.219 4.219 28 C -0.174 4.174 29 C -0.192 4.192 30 H 0.112 0.888 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.251 0.749 34 H 0.249 0.751 35 H 0.021 0.979 36 H 0.026 0.974 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.049 0.951 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.098 0.902 47 H 0.076 0.924 48 H 0.075 0.925 49 H 0.071 0.929 50 H 0.076 0.924 51 H 0.079 0.921 52 H 0.045 0.955 53 H 0.077 0.923 54 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.302 14.367 -6.771 17.921 hybrid contribution 0.571 -1.407 1.234 1.957 sum -7.731 12.960 -5.537 16.074 Atomic orbital electron populations 1.21881 0.88240 1.05936 1.06289 1.21456 0.92079 0.82400 0.74160 1.90705 1.71491 1.32238 1.51271 1.45965 1.05191 1.10198 1.74734 1.20768 0.83056 0.95355 0.97233 0.86789 1.20777 0.82361 0.89656 0.77087 1.90663 1.56561 1.41560 1.56067 1.46061 1.10308 1.14155 1.64132 1.22167 0.95578 0.84297 0.94987 0.90320 1.21057 0.83931 0.94407 0.93527 1.44621 1.03772 1.47218 1.38680 1.19413 0.91150 1.16553 1.09164 0.89841 1.25541 0.97099 1.01175 1.01816 1.70200 1.11050 1.38438 1.40089 0.85198 0.78356 0.77311 0.79207 1.21612 1.22654 1.19221 1.21876 0.96266 0.91950 0.88602 1.22028 0.92791 0.98114 0.94721 1.21668 1.03321 0.93739 0.99616 1.21578 1.02461 0.96163 0.97802 1.20779 0.96074 0.97051 0.92564 1.22217 0.93647 1.02868 1.03214 1.21762 1.01061 0.94341 1.00228 1.21792 1.01178 0.96639 0.99640 0.88768 0.87537 0.87536 0.74940 0.75100 0.97881 0.97445 0.94863 0.95224 0.93559 0.90334 0.91457 0.92137 0.95124 0.91331 0.90691 0.90220 0.92365 0.92491 0.92892 0.92432 0.92059 0.95465 0.92349 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 10.39 71.24 0.74 -1.28 16 2 C 0.51 10.86 6.40 87.66 0.56 11.42 16 3 O -0.58 -15.86 14.23 -3.02 -0.04 -15.90 16 4 N -0.71 -16.31 4.07 -446.09 -1.82 -18.13 16 5 C 0.15 3.81 1.97 44.24 0.09 3.90 16 6 H 0.11 2.83 7.58 -2.39 -0.02 2.82 16 7 C 0.51 16.59 5.58 87.66 0.49 17.08 16 8 O -0.57 -22.11 15.52 -3.03 -0.05 -22.16 16 9 N -0.69 -21.57 2.96 -436.44 -1.29 -22.86 16 10 C 0.14 4.97 2.54 46.28 0.12 5.09 16 11 H 0.08 3.05 7.55 -2.39 -0.02 3.04 16 12 C 0.20 9.72 4.73 86.73 0.41 10.13 16 13 N -0.62 -30.18 3.38 -692.00 -2.34 -32.52 16 14 C -0.23 -12.77 10.28 84.03 0.86 -11.91 16 15 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 16 C -0.06 -3.59 5.49 84.86 0.47 -3.13 16 17 N -0.95 -57.91 10.31 21.65 0.22 -57.69 16 18 Si 0.97 46.07 29.55 68.60 2.03 48.10 16 19 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 20 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 C 0.14 5.08 6.13 86.85 0.53 5.62 16 23 C -0.08 -2.27 0.84 -50.69 -0.04 -2.32 16 24 C -0.13 -2.67 8.36 71.98 0.60 -2.07 16 25 C -0.12 -3.61 8.61 71.98 0.62 -2.99 16 26 C -0.06 -1.67 0.62 -52.18 -0.03 -1.71 16 27 C -0.16 -4.49 7.57 71.98 0.54 -3.94 16 28 C -0.12 -2.80 7.03 71.98 0.51 -2.30 16 29 C -0.14 -4.08 8.07 71.98 0.58 -3.50 16 30 H 0.09 0.85 7.91 -2.38 -0.02 0.83 16 31 H 0.11 1.09 8.14 -2.39 -0.02 1.08 16 32 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.41 9.37 7.55 -92.71 -0.70 8.67 16 34 H 0.41 10.87 5.31 -92.71 -0.49 10.37 16 35 H 0.00 0.18 7.38 -2.39 -0.02 0.16 16 36 H 0.01 0.42 7.40 -2.38 -0.02 0.41 16 37 H 0.24 14.63 8.31 -92.71 -0.77 13.86 16 38 H 0.03 1.04 8.04 -2.39 -0.02 1.02 16 39 H 0.05 1.67 8.05 -2.39 -0.02 1.65 16 40 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.06 1.18 6.19 -2.39 -0.01 1.16 16 43 H 0.03 1.13 7.82 -2.39 -0.02 1.11 16 44 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 46 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.06 1.91 5.11 -2.39 -0.01 1.90 16 49 H 0.05 1.29 5.71 -2.39 -0.01 1.27 16 50 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 51 H 0.06 1.50 7.70 -2.39 -0.02 1.48 16 52 H 0.03 1.02 7.26 -2.39 -0.02 1.01 16 53 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 54 H 0.07 1.76 7.54 -2.39 -0.02 1.74 16 Total: -1.00 -72.81 407.62 3.46 -69.35 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: -0.30 Total: 33.70 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: 7.05 Total: 18.10 kcal Atomic # 7 Polarization: -125.96 SS G_CDS: -5.23 Total: -131.19 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -0.09 Total: -38.06 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -72.81 3.46 -69.35 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700575474.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.856 kcal (2) G-P(sol) polarization free energy of solvation -72.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds