Wall clock time and date at job start Sat Apr 11 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21284 * 119.99667 * 2 1 4 4 N 1.34771 * 120.00313 * 179.97438 * 2 1 3 5 5 C 1.46500 * 120.00039 * 180.02562 * 4 2 1 6 6 H 1.09005 * 109.47409 * 324.99602 * 5 4 2 7 7 C 1.50705 * 109.47253 * 205.00016 * 5 4 2 8 8 O 1.21282 * 119.99359 * 333.22153 * 7 5 4 9 9 N 1.34776 * 120.00350 * 153.22443 * 7 5 4 10 10 C 1.46498 * 119.99826 * 174.80907 * 9 7 5 11 11 H 1.09001 * 110.63901 * 322.50446 * 10 9 7 12 12 C 1.54319 * 110.72404 * 85.65167 * 10 9 7 13 13 N 1.47022 * 107.27239 * 96.16700 * 12 10 9 14 14 C 1.36936 * 125.64782 * 178.90971 * 13 12 10 15 15 H 1.08007 * 119.99704 * 180.02562 * 14 13 12 16 16 C 1.38804 * 120.00211 * 0.02562 * 14 13 12 17 17 N 1.31619 * 119.99981 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00176 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47118 * 60.00352 * 18 16 14 20 20 H 1.48497 * 109.47063 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.46789 * 300.00042 * 18 16 14 22 22 C 1.47425 * 108.70218 * 358.94293 * 13 12 10 23 23 C 1.54911 * 104.83406 * 24.12587 * 22 13 12 24 24 C 1.53000 * 111.00377 * 204.91846 * 23 22 13 25 25 C 1.53000 * 110.99942 * 81.06572 * 23 22 13 26 26 C 1.53003 * 109.47397 * 84.99651 * 5 4 2 27 27 C 1.53000 * 109.47040 * 183.36961 * 26 5 4 28 28 C 1.53002 * 109.46787 * 63.37018 * 26 5 4 29 29 C 1.53001 * 109.47096 * 303.36657 * 26 5 4 30 30 H 1.09003 * 109.46885 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47577 * 300.00266 * 1 2 3 32 32 H 1.09001 * 109.46873 * 60.00484 * 1 2 3 33 33 H 0.97001 * 120.00101 * 359.97438 * 4 2 1 34 34 H 0.97000 * 119.99616 * 354.80317 * 9 7 5 35 35 H 1.08995 * 109.88039 * 215.58863 * 12 10 9 36 36 H 1.09005 * 109.88124 * 336.74931 * 12 10 9 37 37 H 0.97007 * 120.00177 * 179.97438 * 17 16 14 38 38 H 1.09000 * 110.36677 * 142.96945 * 22 13 12 39 39 H 1.09008 * 110.36783 * 265.28735 * 22 13 12 40 40 H 1.09000 * 109.46746 * 173.84401 * 24 23 22 41 41 H 1.09005 * 109.47075 * 293.83789 * 24 23 22 42 42 H 1.08997 * 109.47424 * 53.84016 * 24 23 22 43 43 H 1.09001 * 109.47126 * 307.80278 * 25 23 22 44 44 H 1.08991 * 109.47233 * 67.80785 * 25 23 22 45 45 H 1.09001 * 109.46633 * 187.80401 * 25 23 22 46 46 H 1.09000 * 109.47409 * 52.71380 * 27 26 5 47 47 H 1.09007 * 109.47200 * 292.71193 * 27 26 5 48 48 H 1.08993 * 109.46993 * 172.71832 * 27 26 5 49 49 H 1.08996 * 109.46521 * 180.02562 * 28 26 5 50 50 H 1.09001 * 109.46738 * 299.99669 * 28 26 5 51 51 H 1.08996 * 109.47304 * 60.00031 * 28 26 5 52 52 H 1.09001 * 109.47203 * 300.00298 * 29 26 5 53 53 H 1.08999 * 109.46814 * 59.99655 * 29 26 5 54 54 H 1.08998 * 109.46759 * 179.97438 * 29 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6459 -1.1670 0.0011 6 1 4.0095 -0.3254 -0.5885 7 6 4.1486 -2.4549 -0.5989 8 8 3.4666 -3.4563 -0.5437 9 7 5.3559 -2.4938 -1.1967 10 6 5.8938 -3.7684 -1.6787 11 1 5.6392 -4.5767 -0.9931 12 6 5.3789 -4.0757 -3.1006 13 7 6.4100 -3.6228 -4.0457 14 6 6.3474 -3.7347 -5.4090 15 1 7.1609 -3.3698 -6.0186 16 6 5.2386 -4.3170 -6.0075 17 7 4.2471 -4.7612 -5.2646 18 14 5.1536 -4.4702 -7.8673 19 1 6.2936 -5.2909 -8.3490 20 1 3.8762 -5.1221 -8.2524 21 1 5.2232 -3.1188 -8.4789 22 6 7.5228 -3.0291 -3.2824 23 6 7.4298 -3.6757 -1.8778 24 6 8.0671 -2.7762 -0.8167 25 6 8.0686 -5.0659 -1.8707 26 6 4.1554 -1.0409 1.4383 27 6 5.6831 -0.9563 1.4322 28 6 3.7156 -2.2646 2.2445 29 6 3.5771 0.2244 2.0752 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6960 -2.0072 0.0013 34 1 5.8685 -1.6779 -1.3079 35 1 5.2182 -5.1479 -3.2129 36 1 4.4480 -3.5383 -3.2819 37 1 3.4720 -5.1678 -5.6828 38 1 8.4765 -3.2734 -3.7502 39 1 7.4000 -1.9483 -3.2114 40 1 7.8922 -3.2006 0.1719 41 1 9.1398 -2.7054 -0.9971 42 1 7.6234 -1.7820 -0.8691 43 1 7.6469 -5.6636 -2.6788 44 1 9.1452 -4.9717 -2.0122 45 1 7.8688 -5.5527 -0.9162 46 1 6.0004 -0.1640 0.7542 47 1 6.0983 -1.9075 1.0991 48 1 6.0388 -0.7372 2.4389 49 1 4.0782 -2.1745 3.2684 50 1 2.6272 -2.3248 2.2488 51 1 4.1276 -3.1659 1.7907 52 1 3.8905 1.0961 1.5007 53 1 2.4888 0.1641 2.0794 54 1 3.9398 0.3140 3.0991 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700575476.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:07 Heat of formation + Delta-G solvation = -79.893327 kcal Electronic energy + Delta-G solvation = -32790.334677 eV Core-core repulsion = 28761.626646 eV Total energy + Delta-G solvation = -4028.708031 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.03559 -40.68251 -39.45342 -37.64790 -35.75025 -34.79954 -34.39370 -32.60952 -31.08506 -30.05401 -28.40867 -28.16201 -28.03598 -27.55620 -27.06496 -25.04454 -22.51542 -21.78601 -21.48468 -20.39345 -19.83566 -18.69941 -18.63421 -17.79736 -17.17306 -17.10982 -16.83826 -16.41471 -15.90829 -15.62270 -15.41668 -15.27104 -14.86203 -14.84693 -14.65031 -14.39913 -14.00519 -13.79598 -13.67285 -13.42742 -13.35484 -13.20171 -13.14505 -13.01650 -12.92182 -12.82805 -12.77596 -12.65703 -12.57891 -12.52568 -12.26383 -12.16501 -11.89609 -11.83779 -11.75441 -11.67729 -11.49948 -11.29737 -10.92374 -10.89715 -10.71704 -10.09286 -9.96980 -8.88713 -7.83780 -5.20128 1.42711 1.45749 1.46411 1.52300 1.66226 1.92063 2.46664 2.49813 3.34056 3.47122 3.56147 3.65485 3.75077 3.84432 3.93946 3.97515 4.08107 4.10500 4.31315 4.40536 4.48593 4.49786 4.55153 4.65001 4.69805 4.78131 4.78915 4.86889 4.88191 4.91077 4.96450 5.00944 5.01995 5.04778 5.05711 5.13905 5.14921 5.18368 5.24122 5.31859 5.33051 5.36832 5.45120 5.45359 5.48603 5.58899 5.72068 5.77034 6.18151 6.49775 6.51486 7.08438 7.18614 7.20927 7.78478 8.42205 9.24908 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011599 B = 0.003959 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.412063 B = 7070.763158 C = 8655.273420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.509 3.491 3 O -0.579 6.579 4 N -0.711 5.711 5 C 0.141 3.859 6 H 0.095 0.905 7 C 0.515 3.485 8 O -0.566 6.566 9 N -0.694 5.694 10 C 0.142 3.858 11 H 0.081 0.919 12 C 0.195 3.805 13 N -0.621 5.621 14 C -0.239 4.239 15 H 0.085 0.915 16 C -0.067 4.067 17 N -0.952 5.952 18 Si 0.975 3.025 19 H -0.274 1.274 20 H -0.298 1.298 21 H -0.278 1.278 22 C 0.137 3.863 23 C -0.073 4.073 24 C -0.125 4.125 25 C -0.123 4.123 26 C -0.063 4.063 27 C -0.150 4.150 28 C -0.137 4.137 29 C -0.121 4.121 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.412 0.588 34 H 0.407 0.593 35 H 0.005 0.995 36 H -0.002 1.002 37 H 0.243 0.757 38 H 0.047 0.953 39 H 0.027 0.973 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.028 0.972 44 H 0.077 0.923 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.080 0.920 49 H 0.073 0.927 50 H 0.053 0.947 51 H 0.042 0.958 52 H 0.052 0.948 53 H 0.043 0.957 54 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.514 8.247 18.460 20.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.298 3.702 3 O -0.459 6.459 4 N -0.364 5.364 5 C 0.032 3.968 6 H 0.113 0.887 7 C 0.301 3.699 8 O -0.445 6.445 9 N -0.346 5.346 10 C 0.036 3.964 11 H 0.099 0.901 12 C 0.069 3.931 13 N -0.347 5.347 14 C -0.369 4.369 15 H 0.102 0.898 16 C -0.260 4.260 17 N -0.601 5.601 18 Si 0.804 3.196 19 H -0.200 1.200 20 H -0.225 1.225 21 H -0.204 1.204 22 C 0.012 3.988 23 C -0.074 4.074 24 C -0.183 4.183 25 C -0.181 4.181 26 C -0.065 4.065 27 C -0.208 4.208 28 C -0.194 4.194 29 C -0.178 4.178 30 H 0.112 0.888 31 H 0.130 0.870 32 H 0.118 0.882 33 H 0.249 0.751 34 H 0.245 0.755 35 H 0.023 0.977 36 H 0.017 0.983 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.045 0.955 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.047 0.953 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.099 0.901 49 H 0.092 0.908 50 H 0.072 0.928 51 H 0.061 0.939 52 H 0.071 0.929 53 H 0.062 0.938 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.333 8.192 18.335 20.126 hybrid contribution -0.665 -0.556 -1.782 1.982 sum 0.668 7.636 16.552 18.241 Atomic orbital electron populations 1.21885 0.88418 1.05925 1.06233 1.21429 0.92091 0.82532 0.74149 1.90696 1.71498 1.32288 1.51393 1.45991 1.05609 1.10024 1.74779 1.20902 0.82669 0.94870 0.98383 0.88732 1.20770 0.81329 0.90384 0.77374 1.90688 1.56370 1.37425 1.60041 1.45898 1.19256 1.11062 1.58393 1.22082 0.94203 0.85607 0.94542 0.90058 1.21061 0.90166 0.95644 0.86218 1.44683 1.18389 1.69958 1.01684 1.19429 1.02570 1.32672 0.82181 0.89756 1.25636 0.96685 1.01451 1.02223 1.70225 1.08781 1.46493 1.34569 0.85199 0.76543 0.77809 0.80087 1.20022 1.22480 1.20393 1.21902 0.90922 0.95092 0.90903 1.21973 0.91926 0.97825 0.95711 1.21706 1.01238 0.98225 0.97121 1.21585 1.00808 0.94341 1.01325 1.20819 0.97228 0.97197 0.91234 1.22038 0.92295 1.02606 1.03823 1.21838 1.01361 0.96002 1.00193 1.21800 1.00116 0.95605 1.00313 0.88774 0.87014 0.88160 0.75065 0.75522 0.97721 0.98341 0.94773 0.93498 0.95533 0.90985 0.90419 0.91970 0.95284 0.90428 0.91296 0.91657 0.91989 0.90111 0.90760 0.92823 0.93857 0.92874 0.93761 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 10.39 71.24 0.74 -1.82 16 2 C 0.51 12.35 6.18 87.66 0.54 12.89 16 3 O -0.58 -17.64 14.22 -3.04 -0.04 -17.68 16 4 N -0.71 -17.86 4.27 -446.08 -1.90 -19.76 16 5 C 0.14 3.71 1.93 44.25 0.09 3.79 16 6 H 0.09 2.67 7.58 -2.38 -0.02 2.65 16 7 C 0.52 16.61 5.31 87.66 0.47 17.07 16 8 O -0.57 -22.21 15.06 -3.03 -0.05 -22.26 16 9 N -0.69 -21.63 3.54 -436.92 -1.55 -23.18 16 10 C 0.14 5.18 2.46 46.18 0.11 5.29 16 11 H 0.08 3.08 7.71 -2.39 -0.02 3.06 16 12 C 0.20 9.93 4.79 86.73 0.42 10.35 16 13 N -0.62 -31.44 3.38 -691.99 -2.34 -33.78 16 14 C -0.24 -13.48 10.28 84.03 0.86 -12.61 16 15 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 16 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 17 N -0.95 -59.65 10.31 21.65 0.22 -59.42 16 18 Si 0.98 46.86 29.55 68.60 2.03 48.89 16 19 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 C 0.14 5.16 6.14 86.86 0.53 5.69 16 23 C -0.07 -2.19 0.83 -50.79 -0.04 -2.23 16 24 C -0.13 -2.51 8.16 71.98 0.59 -1.92 16 25 C -0.12 -3.58 8.57 71.98 0.62 -2.96 16 26 C -0.06 -1.31 0.62 -52.18 -0.03 -1.34 16 27 C -0.15 -2.54 7.80 71.98 0.56 -1.98 16 28 C -0.14 -2.82 7.94 71.98 0.57 -2.25 16 29 C -0.12 -2.47 6.97 71.98 0.50 -1.96 16 30 H 0.09 1.14 7.91 -2.39 -0.02 1.12 16 31 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.41 10.17 7.64 -92.71 -0.71 9.46 16 34 H 0.41 10.88 6.67 -92.71 -0.62 10.27 16 35 H 0.00 0.28 7.38 -2.39 -0.02 0.26 16 36 H 0.00 -0.10 7.41 -2.38 -0.02 -0.11 16 37 H 0.24 15.02 8.31 -92.70 -0.77 14.25 16 38 H 0.05 1.72 8.05 -2.39 -0.02 1.70 16 39 H 0.03 0.96 8.01 -2.38 -0.02 0.95 16 40 H 0.07 1.26 8.13 -2.39 -0.02 1.24 16 41 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.06 1.14 6.32 -2.39 -0.02 1.12 16 43 H 0.03 1.07 7.91 -2.39 -0.02 1.05 16 44 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.06 1.11 6.86 -2.38 -0.02 1.09 16 48 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 50 H 0.05 1.13 7.70 -2.39 -0.02 1.11 16 51 H 0.04 1.07 6.69 -2.39 -0.02 1.05 16 52 H 0.05 1.25 7.30 -2.39 -0.02 1.23 16 53 H 0.04 0.97 5.87 -2.39 -0.01 0.96 16 54 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -76.45 410.05 2.92 -73.53 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: -0.44 Total: 31.09 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 6.99 Total: 22.57 kcal Atomic # 7 Polarization: -130.57 SS G_CDS: -5.57 Total: -136.14 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -0.09 Total: -39.94 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -76.45 2.92 -73.53 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700575476.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.362 kcal (2) G-P(sol) polarization free energy of solvation -76.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds