Wall clock time and date at job start Sat Apr 11 2020 05:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36942 * 119.99531 * 2 1 4 4 H 1.08007 * 119.99377 * 197.82771 * 3 2 1 5 5 C 1.38805 * 120.00538 * 17.82078 * 3 2 1 6 6 N 1.31623 * 119.99711 * 15.23001 * 5 3 2 7 7 Si 1.86793 * 120.00350 * 195.22303 * 5 3 2 8 8 H 1.48500 * 109.47305 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.46860 * 120.00262 * 7 5 3 10 10 H 1.48495 * 109.47721 * 240.00272 * 7 5 3 11 11 C 1.46495 * 120.00109 * 179.97438 * 2 1 3 12 12 C 1.53008 * 109.47163 * 269.99983 * 11 2 1 13 13 O 1.42895 * 109.46987 * 65.00006 * 12 11 2 14 14 C 1.42904 * 114.00367 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.47463 * 180.02562 * 14 13 12 16 16 N 1.46505 * 109.47130 * 64.99847 * 15 14 13 17 17 C 1.34779 * 119.99868 * 180.02562 * 16 15 14 18 18 O 1.21286 * 119.99819 * 359.97438 * 17 16 15 19 19 C 1.50694 * 119.99867 * 180.02562 * 17 16 15 20 20 H 1.09003 * 109.82043 * 67.80080 * 19 17 16 21 21 C 1.53633 * 109.78480 * 307.00317 * 19 17 16 22 22 C 1.52825 * 110.64905 * 297.54377 * 21 19 17 23 23 C 1.53641 * 110.60605 * 306.13172 * 22 21 19 24 24 C 1.52368 * 107.59377 * 56.41013 * 23 22 21 25 25 H 1.08997 * 110.92496 * 58.72229 * 24 23 22 26 26 C 1.53915 * 113.27293 * 185.04778 * 24 23 22 27 27 C 1.55324 * 102.08591 * 155.08754 * 26 24 23 28 28 C 1.54806 * 104.99258 * 337.80250 * 27 26 24 29 29 N 1.45537 * 109.78396 * 188.59448 * 19 17 16 30 30 H 1.09005 * 109.47682 * 274.17293 * 1 2 3 31 31 H 1.09001 * 109.47390 * 34.17807 * 1 2 3 32 32 H 1.09006 * 109.47136 * 154.17365 * 1 2 3 33 33 H 0.96998 * 119.99920 * 179.97438 * 6 5 3 34 34 H 1.09000 * 109.47498 * 150.00292 * 11 2 1 35 35 H 1.08994 * 109.47480 * 29.99828 * 11 2 1 36 36 H 1.08999 * 109.47036 * 305.00076 * 12 11 2 37 37 H 1.08993 * 109.46843 * 185.00029 * 12 11 2 38 38 H 1.08993 * 109.46757 * 59.99813 * 14 13 12 39 39 H 1.08995 * 109.46784 * 300.00295 * 14 13 12 40 40 H 1.09005 * 109.47011 * 305.00289 * 15 14 13 41 41 H 1.08994 * 109.47052 * 185.00246 * 15 14 13 42 42 H 0.96997 * 119.99898 * 0.02562 * 16 15 14 43 43 H 1.09004 * 109.24328 * 177.23651 * 21 19 17 44 44 H 1.09002 * 109.20625 * 57.82109 * 21 19 17 45 45 H 1.08998 * 109.25017 * 185.84434 * 22 21 19 46 46 H 1.08999 * 109.22107 * 66.40414 * 22 21 19 47 47 H 1.08996 * 109.83294 * 296.88406 * 23 22 21 48 48 H 1.09002 * 109.83104 * 175.93115 * 23 22 21 49 49 H 1.09007 * 110.91093 * 273.28336 * 26 24 23 50 50 H 1.09008 * 110.91411 * 36.85608 * 26 24 23 51 51 H 1.09003 * 110.33903 * 96.68070 * 27 26 24 52 52 H 1.08998 * 110.34315 * 218.92142 * 27 26 24 53 53 H 1.08998 * 110.15349 * 237.23318 * 28 27 26 54 54 H 1.08998 * 110.15523 * 115.47808 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1495 1.1860 0.0000 4 1 3.1907 1.2084 -0.2864 5 6 1.5055 2.3593 0.3679 6 7 0.3498 2.3066 0.9957 7 14 2.2788 4.0129 -0.0278 8 1 3.5683 3.8003 -0.7330 9 1 1.3620 4.7925 -0.8979 10 1 2.5206 4.7606 1.2321 11 6 2.1974 -1.2687 0.0006 12 6 2.4525 -1.7097 1.4433 13 8 1.2060 -1.9926 2.0823 14 6 1.3323 -2.4160 3.4413 15 6 -0.0566 -2.6900 4.0214 16 7 -0.6652 -3.8218 3.3178 17 6 -1.8978 -4.2449 3.6614 18 8 -2.5030 -3.6890 4.5535 19 6 -2.5235 -5.4095 2.9381 20 1 -1.9794 -6.3248 3.1712 21 6 -2.4927 -5.1578 1.4229 22 6 -3.3184 -3.9226 1.0648 23 6 -4.7431 -4.0430 1.6271 24 6 -4.6280 -4.2603 3.1308 25 1 -4.0947 -3.4356 3.6035 26 6 -5.9827 -4.5221 3.8129 27 6 -5.5613 -5.3187 5.0779 28 6 -4.1772 -5.9188 4.7307 29 7 -3.9156 -5.5482 3.3393 30 1 -0.3634 0.0748 1.0249 31 1 -0.3634 0.8502 -0.5773 32 1 -0.3634 -0.9251 -0.4477 33 1 -0.1001 3.1264 1.2531 34 1 3.1499 -1.1386 -0.5133 35 1 1.6084 -2.0286 -0.5129 36 1 2.9642 -0.9122 1.9820 37 1 3.0732 -2.6056 1.4450 38 1 1.8210 -1.6334 4.0217 39 1 1.9297 -3.3267 3.4840 40 1 -0.6828 -1.8063 3.8979 41 1 0.0326 -2.9267 5.0816 42 1 -0.1809 -4.2666 2.6047 43 1 -2.9021 -6.0259 0.9061 44 1 -1.4611 -5.0046 1.1057 45 1 -3.3671 -3.8250 -0.0197 46 1 -2.8402 -3.0374 1.4841 47 1 -5.2511 -4.8914 1.1686 48 1 -5.2982 -3.1265 1.4272 49 1 -6.4679 -3.5852 4.0868 50 1 -6.6310 -5.1213 3.1733 51 1 -5.4803 -4.6516 5.9362 52 1 -6.2786 -6.1137 5.2816 53 1 -4.2022 -7.0038 4.8319 54 1 -3.4112 -5.4979 5.3819 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700704448.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:29 Heat of formation + Delta-G solvation = -70.748251 kcal Electronic energy + Delta-G solvation = -31743.451851 eV Core-core repulsion = 27715.140380 eV Total energy + Delta-G solvation = -4028.311471 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.11373 -39.56422 -38.83794 -37.22089 -36.21205 -35.47689 -33.49817 -33.32088 -31.08232 -30.09935 -29.41500 -28.17482 -27.82461 -25.14536 -24.79357 -23.44204 -22.67398 -22.14484 -22.00851 -21.79119 -20.58750 -18.78569 -17.86753 -17.67639 -17.47585 -16.99814 -16.76870 -16.58171 -16.30960 -15.98239 -15.66628 -15.31257 -15.25093 -15.16275 -14.77602 -14.58422 -14.49744 -14.04982 -13.85684 -13.77446 -13.27606 -13.23547 -13.13994 -13.03579 -12.76186 -12.64786 -12.52213 -12.48011 -12.34407 -12.18454 -12.09027 -11.98182 -11.80045 -11.75733 -11.69137 -11.44927 -11.31409 -11.25409 -11.09038 -10.61400 -10.40545 -10.07352 -9.17483 -8.79076 -7.79318 -5.22189 1.44970 1.46754 1.56319 1.56730 2.21235 2.52278 2.84295 2.93108 3.33972 3.60998 3.68940 3.76046 3.77634 3.94895 3.98556 4.07270 4.12207 4.14994 4.22711 4.37100 4.42249 4.47665 4.51517 4.57276 4.58148 4.61419 4.67445 4.70542 4.79323 4.83935 4.88168 4.93226 4.96635 4.99623 5.01897 5.03575 5.07673 5.15604 5.17906 5.20540 5.30415 5.36765 5.40043 5.40534 5.49055 5.65015 5.81982 5.95887 6.15564 6.32987 6.44444 6.54988 7.17787 7.21420 7.92812 8.36305 9.24579 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016100 B = 0.002718 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.723940 B =10297.765500 C =10783.882744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.200 3.800 2 N -0.614 5.614 3 C -0.256 4.256 4 H 0.078 0.922 5 C -0.061 4.061 6 N -0.939 5.939 7 Si 0.965 3.035 8 H -0.262 1.262 9 H -0.295 1.295 10 H -0.297 1.297 11 C 0.145 3.855 12 C 0.051 3.949 13 O -0.392 6.392 14 C 0.055 3.945 15 C 0.131 3.869 16 N -0.707 5.707 17 C 0.482 3.518 18 O -0.578 6.578 19 C 0.072 3.928 20 H 0.132 0.868 21 C -0.096 4.096 22 C -0.125 4.125 23 C -0.102 4.102 24 C 0.042 3.958 25 H 0.055 0.945 26 C -0.111 4.111 27 C -0.120 4.120 28 C 0.045 3.955 29 N -0.503 5.503 30 H -0.006 1.006 31 H 0.010 0.990 32 H 0.019 0.981 33 H 0.243 0.757 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.020 0.980 37 H 0.072 0.928 38 H 0.051 0.949 39 H 0.082 0.918 40 H 0.035 0.965 41 H 0.086 0.914 42 H 0.413 0.587 43 H 0.100 0.900 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.026 0.974 47 H 0.085 0.915 48 H 0.059 0.941 49 H 0.064 0.936 50 H 0.085 0.915 51 H 0.054 0.946 52 H 0.088 0.912 53 H 0.090 0.910 54 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.636 -22.329 3.901 23.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.337 5.337 3 C -0.386 4.386 4 H 0.095 0.905 5 C -0.255 4.255 6 N -0.587 5.587 7 Si 0.794 3.206 8 H -0.187 1.187 9 H -0.222 1.222 10 H -0.224 1.224 11 C 0.019 3.981 12 C -0.028 4.028 13 O -0.311 6.311 14 C -0.022 4.022 15 C 0.007 3.993 16 N -0.359 5.359 17 C 0.269 3.731 18 O -0.459 6.459 19 C -0.041 4.041 20 H 0.149 0.851 21 C -0.134 4.134 22 C -0.163 4.163 23 C -0.140 4.140 24 C -0.065 4.065 25 H 0.073 0.927 26 C -0.149 4.149 27 C -0.158 4.158 28 C -0.083 4.083 29 N -0.225 5.225 30 H 0.012 0.988 31 H 0.029 0.971 32 H 0.038 0.962 33 H 0.052 0.948 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.054 0.946 41 H 0.104 0.896 42 H 0.250 0.750 43 H 0.119 0.881 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.045 0.955 47 H 0.104 0.896 48 H 0.078 0.922 49 H 0.083 0.917 50 H 0.104 0.896 51 H 0.072 0.928 52 H 0.106 0.894 53 H 0.108 0.892 54 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -6.472 -22.211 4.160 23.505 hybrid contribution 1.127 2.227 0.743 2.604 sum -5.345 -19.984 4.903 21.259 Atomic orbital electron populations 1.20279 0.82819 0.94746 0.96729 1.44168 1.02125 1.01692 1.85688 1.19651 0.95956 0.85797 1.37199 0.90474 1.25703 0.98441 1.01515 0.99847 1.70335 1.18780 1.26210 1.43325 0.85224 0.78101 0.80326 0.76933 1.18659 1.22180 1.22433 1.21146 0.96845 0.87018 0.93097 1.23277 0.85346 0.97998 0.96187 1.87972 1.30914 1.87723 1.24521 1.22677 0.95771 0.99611 0.84153 1.21180 0.92993 0.88858 0.96269 1.46032 1.17656 1.33380 1.38881 1.22507 0.81090 0.86279 0.83217 1.90617 1.62113 1.59698 1.33424 1.21917 0.89917 0.95694 0.96542 0.85088 1.21590 1.01166 0.99261 0.91403 1.21591 0.95881 0.97309 1.01482 1.21524 0.96653 1.01988 0.93826 1.22961 0.95229 0.91883 0.96468 0.92705 1.22312 0.95767 1.00054 0.96741 1.22539 0.96198 0.99649 0.97436 1.22586 0.97026 1.00596 0.88073 1.63267 1.08859 1.28291 1.22132 0.98814 0.97086 0.96217 0.94800 0.90841 0.91881 0.96186 0.91042 0.93048 0.90036 0.94606 0.89590 0.74993 0.88124 0.89946 0.90478 0.95489 0.89605 0.92208 0.91711 0.89610 0.92752 0.89364 0.89188 0.94991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 10.43 8.62 127.77 1.10 11.53 16 2 N -0.61 -30.87 2.89 -726.94 -2.10 -32.98 16 3 C -0.26 -14.03 9.70 84.03 0.82 -13.21 16 4 H 0.08 4.02 7.86 -2.91 -0.02 3.99 16 5 C -0.06 -3.47 5.06 84.86 0.43 -3.04 16 6 N -0.94 -57.69 10.54 21.65 0.23 -57.46 16 7 Si 0.97 45.89 29.58 68.60 2.03 47.91 16 8 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 9 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 10 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 11 C 0.14 5.51 6.11 86.38 0.53 6.04 16 12 C 0.05 1.72 6.28 71.98 0.45 2.18 16 13 O -0.39 -13.86 9.85 -148.98 -1.47 -15.33 16 14 C 0.05 1.51 6.07 71.98 0.44 1.95 16 15 C 0.13 3.78 6.06 86.38 0.52 4.30 16 16 N -0.71 -17.43 5.36 -463.05 -2.48 -19.91 16 17 C 0.48 12.91 5.59 87.65 0.49 13.40 16 18 O -0.58 -19.95 11.99 -3.05 -0.04 -19.99 16 19 C 0.07 1.45 3.07 44.64 0.14 1.58 16 20 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 21 C -0.10 -1.70 5.44 30.75 0.17 -1.54 16 22 C -0.12 -2.88 5.66 30.75 0.17 -2.70 16 23 C -0.10 -2.27 5.68 30.60 0.17 -2.10 16 24 C 0.04 1.05 2.23 44.68 0.10 1.15 16 25 H 0.06 1.83 5.11 -2.39 -0.01 1.82 16 26 C -0.11 -2.29 6.61 31.70 0.21 -2.08 16 27 C -0.12 -2.35 6.98 32.01 0.22 -2.13 16 28 C 0.04 0.94 6.38 87.03 0.56 1.50 16 29 N -0.50 -10.84 4.60 -845.12 -3.89 -14.73 16 30 H -0.01 -0.38 7.52 -2.38 -0.02 -0.40 16 31 H 0.01 0.60 6.98 -2.39 -0.02 0.58 16 32 H 0.02 0.89 7.85 -2.38 -0.02 0.87 16 33 H 0.24 14.61 8.31 -92.71 -0.77 13.83 16 34 H 0.07 2.56 8.03 -2.39 -0.02 2.54 16 35 H 0.06 2.16 7.86 -2.39 -0.02 2.14 16 36 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 41 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.41 8.21 7.47 -92.71 -0.69 7.52 16 43 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 44 H 0.08 1.29 7.16 -2.39 -0.02 1.27 16 45 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.03 0.81 7.61 -2.39 -0.02 0.79 16 47 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 49 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 50 H 0.09 1.52 8.10 -2.38 -0.02 1.50 16 51 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 52 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 53 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 54 H 0.03 0.83 6.30 -2.39 -0.02 0.81 16 Total: -1.00 -72.78 409.97 -1.04 -73.81 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.17 Total: 21.87 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 6.52 Total: 16.81 kcal Atomic # 7 Polarization: -116.84 SS G_CDS: -8.25 Total: -125.08 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -1.50 Total: -35.32 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -72.78 -1.04 -73.81 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700704448.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.067 kcal (2) G-P(sol) polarization free energy of solvation -72.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds