Wall clock time and date at job start Sat Apr 11 2020 05:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46502 * 120.00094 * 2 1 4 4 C 1.52998 * 109.47237 * 270.00524 * 3 2 1 5 5 C 1.53004 * 109.47009 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46906 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47192 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47192 * 179.97438 * 7 6 5 9 9 N 1.46504 * 109.47034 * 179.97438 * 8 7 6 10 10 C 1.36933 * 120.00171 * 180.02562 * 9 8 7 11 11 H 1.08005 * 120.00101 * 0.02562 * 10 9 8 12 12 C 1.38813 * 120.00241 * 180.02562 * 10 9 8 13 13 N 1.31618 * 120.00199 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99943 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.46898 * 90.00145 * 14 12 10 16 16 H 1.48495 * 109.47116 * 210.00108 * 14 12 10 17 17 H 1.48499 * 109.47367 * 330.00162 * 14 12 10 18 18 C 1.34779 * 120.00379 * 180.02562 * 2 1 3 19 19 O 1.21284 * 120.00256 * 179.97438 * 18 2 1 20 20 C 1.50700 * 119.99626 * 359.97438 * 18 2 1 21 21 H 1.08998 * 109.13127 * 39.48684 * 20 18 2 22 22 C 1.52918 * 109.30349 * 280.00236 * 20 18 2 23 23 C 1.53343 * 108.81090 * 189.01894 * 22 20 18 24 24 C 1.53071 * 108.42577 * 67.44783 * 23 22 20 25 25 C 1.50176 * 109.89247 * 311.10096 * 24 23 22 26 26 O 1.21277 * 118.24622 * 197.55991 * 25 24 23 27 27 N 1.33355 * 123.50588 * 17.57869 * 25 24 23 28 28 C 1.46505 * 117.94268 * 177.77400 * 27 25 24 29 29 H 1.09001 * 109.47433 * 269.99519 * 1 2 3 30 30 H 1.08997 * 109.47584 * 29.99640 * 1 2 3 31 31 H 1.09004 * 109.46992 * 150.00216 * 1 2 3 32 32 H 1.08998 * 109.46790 * 30.00240 * 3 2 1 33 33 H 1.08995 * 109.47228 * 150.00059 * 3 2 1 34 34 H 1.09008 * 109.46917 * 299.99458 * 4 3 2 35 35 H 1.08995 * 109.47391 * 59.99635 * 4 3 2 36 36 H 1.08998 * 109.47084 * 299.99757 * 5 4 3 37 37 H 1.09001 * 109.46941 * 60.00102 * 5 4 3 38 38 H 1.08998 * 109.47358 * 299.99966 * 6 5 4 39 39 H 1.09003 * 109.47283 * 59.99789 * 6 5 4 40 40 H 1.08998 * 109.47047 * 300.00285 * 7 6 5 41 41 H 1.09003 * 109.47074 * 59.99790 * 7 6 5 42 42 H 1.08998 * 109.47358 * 300.00095 * 8 7 6 43 43 H 1.09001 * 109.46931 * 60.00600 * 8 7 6 44 44 H 0.96997 * 120.00019 * 0.02562 * 9 8 7 45 45 H 0.96996 * 120.00356 * 180.02562 * 13 12 10 46 46 H 1.09002 * 109.60342 * 69.17899 * 22 20 18 47 47 H 1.08997 * 109.60270 * 308.85743 * 22 20 18 48 48 H 1.08994 * 109.67565 * 187.18710 * 23 22 20 49 49 H 1.09007 * 109.67567 * 307.71577 * 23 22 20 50 50 H 1.08998 * 109.40089 * 71.22841 * 24 23 22 51 51 H 1.09003 * 109.40232 * 191.05864 * 24 23 22 52 52 H 1.08994 * 109.47262 * 0.02562 * 28 27 25 53 53 H 1.09004 * 109.46520 * 120.00260 * 28 27 25 54 54 H 1.08999 * 109.47073 * 240.00078 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4523 1.7105 -1.4425 5 6 3.2168 3.0358 -1.4424 6 6 3.4723 3.4773 -2.8849 7 6 4.2362 4.8029 -2.8849 8 6 4.4922 5.2440 -4.3274 9 7 5.2231 6.5137 -4.3274 10 6 5.5656 7.1066 -5.5132 11 1 5.2964 6.6385 -6.4486 12 6 6.2586 8.3094 -5.5132 13 7 6.5873 8.8795 -6.6530 14 14 6.7234 9.1194 -3.8955 15 1 8.0597 8.6351 -3.4654 16 1 6.7648 10.5931 -4.0737 17 1 5.7153 8.7741 -2.8612 18 6 2.1389 -1.1672 -0.0005 19 8 3.3517 -1.1671 -0.0010 20 6 1.3854 -2.4723 -0.0005 21 1 0.5182 -2.3841 -0.6550 22 6 0.9161 -2.7850 1.4209 23 6 0.3530 -4.2110 1.4531 24 6 1.5049 -5.1914 1.2183 25 6 2.3063 -4.7615 0.0233 26 8 3.0412 -5.5736 -0.4973 27 7 2.2533 -3.5342 -0.4958 28 6 3.1251 -3.2319 -1.6337 29 1 -0.3634 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5137 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6083 2.0283 0.5139 33 1 3.1498 1.1384 0.5138 34 1 3.0415 0.9508 -1.9564 35 1 1.5000 1.8408 -1.9563 36 1 2.6274 3.7952 -0.9287 37 1 4.1693 2.9059 -0.9285 38 1 4.0619 2.7178 -3.3983 39 1 2.5200 3.6071 -3.3992 40 1 3.6462 5.5622 -2.3716 41 1 5.1884 4.6735 -2.3705 42 1 5.0824 4.4846 -4.8403 43 1 3.5401 5.3733 -4.8422 44 1 5.4645 6.9343 -3.4874 45 1 7.0719 9.7198 -6.6531 46 1 0.1394 -2.0784 1.7133 47 1 1.7579 -2.7086 2.1090 48 1 -0.1011 -4.4043 2.4249 49 1 -0.3944 -4.3283 0.6684 50 1 2.1485 -5.2112 2.0978 51 1 1.1014 -6.1886 1.0424 52 1 3.7116 -4.1150 -1.8868 53 1 2.5167 -2.9424 -2.4906 54 1 3.7952 -2.4134 -1.3707 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707189638.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:46 Heat of formation + Delta-G solvation = -92.012296 kcal Electronic energy + Delta-G solvation = -29410.171252 eV Core-core repulsion = 25380.937703 eV Total energy + Delta-G solvation = -4029.233549 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.16794 -40.55702 -38.06885 -37.44332 -37.07063 -35.83759 -34.95737 -33.89732 -32.36976 -31.00990 -28.84226 -28.25721 -27.46185 -26.40090 -25.16959 -23.62211 -23.26790 -22.33745 -21.90845 -20.60665 -19.68630 -19.62507 -18.46549 -17.87957 -17.62591 -16.93176 -16.76545 -16.61836 -16.54033 -16.11551 -15.79900 -15.50187 -15.30250 -15.01392 -14.89958 -14.68863 -14.48819 -14.32892 -13.99388 -13.89167 -13.54471 -13.52418 -13.37802 -13.25973 -13.14155 -12.94861 -12.77164 -12.62047 -12.50350 -12.44000 -12.11052 -12.00627 -11.89609 -11.87533 -11.84426 -11.71299 -11.56499 -11.36079 -11.23346 -10.99572 -10.71121 -9.81558 -9.60504 -9.33365 -8.05951 -5.40288 1.34121 1.35857 1.40501 1.47116 1.48013 1.80185 2.10903 2.46456 3.25035 3.28994 3.46811 3.55188 3.61563 3.78217 3.92327 3.95808 3.99278 4.11813 4.18500 4.21659 4.31042 4.34262 4.39621 4.51853 4.53105 4.56046 4.62070 4.70252 4.73840 4.75164 4.80474 4.87938 4.89027 4.91208 4.91885 4.98298 5.01958 5.02286 5.04848 5.14591 5.22121 5.24595 5.28213 5.32733 5.48798 5.50129 5.56344 5.71714 6.18347 6.22574 6.37845 6.98726 7.04731 7.09504 7.80962 8.01342 9.15623 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.024407 B = 0.001538 C = 0.001491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.925811 B =18195.700003 C =18776.760966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.605 5.605 3 C 0.115 3.885 4 C -0.124 4.124 5 C -0.109 4.109 6 C -0.107 4.107 7 C -0.118 4.118 8 C 0.149 3.851 9 N -0.761 5.761 10 C -0.244 4.244 11 H 0.053 0.947 12 C -0.066 4.066 13 N -0.984 5.984 14 Si 0.961 3.039 15 H -0.278 1.278 16 H -0.292 1.292 17 H -0.249 1.249 18 C 0.496 3.504 19 O -0.571 6.571 20 C 0.126 3.874 21 H 0.130 0.870 22 C -0.124 4.124 23 C -0.111 4.111 24 C -0.132 4.132 25 C 0.507 3.493 26 O -0.605 6.605 27 N -0.590 5.590 28 C 0.055 3.945 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.061 0.939 34 H 0.040 0.960 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.016 0.984 43 H 0.023 0.977 44 H 0.367 0.633 45 H 0.259 0.741 46 H 0.127 0.873 47 H 0.064 0.936 48 H 0.113 0.887 49 H 0.089 0.911 50 H 0.107 0.893 51 H 0.112 0.888 52 H 0.068 0.932 53 H 0.070 0.930 54 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.268 -27.693 25.492 44.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.337 5.337 3 C -0.008 4.008 4 C -0.162 4.162 5 C -0.147 4.147 6 C -0.145 4.145 7 C -0.156 4.156 8 C 0.023 3.977 9 N -0.407 5.407 10 C -0.375 4.375 11 H 0.071 0.929 12 C -0.257 4.257 13 N -0.634 5.634 14 Si 0.788 3.212 15 H -0.204 1.204 16 H -0.218 1.218 17 H -0.174 1.174 18 C 0.284 3.716 19 O -0.451 6.451 20 C 0.019 3.981 21 H 0.147 0.853 22 C -0.162 4.162 23 C -0.148 4.148 24 C -0.172 4.172 25 C 0.298 3.702 26 O -0.487 6.487 27 N -0.321 5.321 28 C -0.088 4.088 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.125 0.875 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.034 0.966 43 H 0.041 0.959 44 H 0.200 0.800 45 H 0.068 0.932 46 H 0.145 0.855 47 H 0.082 0.918 48 H 0.131 0.869 49 H 0.108 0.892 50 H 0.125 0.875 51 H 0.130 0.870 52 H 0.087 0.913 53 H 0.088 0.912 54 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -23.313 -28.091 25.021 44.257 hybrid contribution 1.275 0.901 -0.211 1.575 sum -22.038 -27.190 24.810 42.901 Atomic orbital electron populations 1.22324 0.76434 1.05213 1.04227 1.47990 1.08846 1.05020 1.71869 1.21550 0.97583 0.84719 0.96907 1.21827 1.00822 0.96574 0.97011 1.21444 1.00449 0.96816 0.96024 1.21429 1.00168 0.95279 0.97672 1.21681 1.00757 0.98170 0.94972 1.20861 0.93958 0.85925 0.96906 1.42766 1.69218 1.24874 1.03874 1.19086 1.28961 1.03018 0.86439 0.92923 1.25599 1.00991 0.98455 1.00655 1.69895 1.46371 1.20307 1.26830 0.85319 0.78814 0.77273 0.79842 1.20413 1.21815 1.17350 1.21214 0.87765 0.86534 0.76102 1.90674 1.16030 1.87547 1.50840 1.21325 0.92590 0.83646 1.00529 0.85314 1.21954 1.02758 1.00174 0.91329 1.21681 0.96296 0.91102 1.05729 1.21764 0.98305 1.02548 0.94548 1.21114 0.82455 0.80854 0.85806 1.90691 1.43363 1.51820 1.62873 1.47069 1.41343 1.11038 1.32635 1.22004 0.95655 1.02730 0.88422 0.89620 0.89375 0.89113 0.87500 0.92086 0.94101 0.90421 0.90200 0.92611 0.92860 0.91209 0.91219 0.92183 0.96558 0.95882 0.79997 0.93208 0.85518 0.91755 0.86906 0.89230 0.87527 0.87006 0.91289 0.91188 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.01 9.57 127.77 1.22 1.22 16 2 N -0.61 -5.66 2.87 -846.78 -2.43 -8.09 16 3 C 0.11 1.37 5.41 86.38 0.47 1.84 16 4 C -0.12 -1.81 5.54 30.59 0.17 -1.64 16 5 C -0.11 -1.86 5.21 30.60 0.16 -1.70 16 6 C -0.11 -2.40 5.21 30.59 0.16 -2.24 16 7 C -0.12 -3.40 5.33 30.59 0.16 -3.24 16 8 C 0.15 5.92 6.26 86.38 0.54 6.46 16 9 N -0.76 -37.37 5.41 -343.44 -1.86 -39.22 16 10 C -0.24 -14.61 10.47 84.03 0.88 -13.73 16 11 H 0.05 3.45 8.06 -2.91 -0.02 3.43 16 12 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 13 N -0.98 -64.53 13.97 21.65 0.30 -64.22 16 14 Si 0.96 46.29 27.74 68.60 1.90 48.19 16 15 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 16 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 17 H -0.25 -10.72 6.52 99.48 0.65 -10.08 16 18 C 0.50 7.45 6.32 87.66 0.55 8.00 16 19 O -0.57 -14.55 13.46 -3.04 -0.04 -14.59 16 20 C 0.13 1.17 2.44 44.35 0.11 1.27 16 21 H 0.13 0.42 6.26 -2.39 -0.01 0.40 16 22 C -0.12 -0.38 5.18 30.68 0.16 -0.23 16 23 C -0.11 -0.09 6.04 30.73 0.19 0.09 16 24 C -0.13 -1.14 6.03 29.71 0.18 -0.96 16 25 C 0.51 9.89 7.47 87.71 0.66 10.54 16 26 O -0.61 -17.85 15.95 -3.02 -0.05 -17.90 16 27 N -0.59 -10.34 2.97 -831.38 -2.47 -12.81 16 28 C 0.05 1.19 9.74 127.77 1.24 2.43 16 29 H 0.09 -0.34 7.74 -2.39 -0.02 -0.36 16 30 H 0.09 -0.09 8.07 -2.39 -0.02 -0.11 16 31 H 0.09 -0.30 5.93 -2.38 -0.01 -0.32 16 32 H 0.11 0.71 8.07 -2.39 -0.02 0.69 16 33 H 0.06 1.06 7.42 -2.39 -0.02 1.04 16 34 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 39 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.02 0.92 8.14 -2.39 -0.02 0.91 16 44 H 0.37 16.88 5.53 -92.71 -0.51 16.37 16 45 H 0.26 16.08 8.31 -92.71 -0.77 15.30 16 46 H 0.13 -0.44 7.07 -2.39 -0.02 -0.45 16 47 H 0.06 0.47 8.10 -2.39 -0.02 0.45 16 48 H 0.11 -0.41 8.14 -2.39 -0.02 -0.43 16 49 H 0.09 -0.10 8.13 -2.38 -0.02 -0.12 16 50 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 52 H 0.07 1.77 6.59 -2.39 -0.02 1.76 16 53 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 54 H 0.07 1.92 5.36 -2.39 -0.01 1.90 16 Total: -1.00 -88.76 419.45 2.97 -85.79 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.30 Total: 18.25 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: 7.31 Total: 4.61 kcal Atomic # 7 Polarization: -117.89 SS G_CDS: -6.45 Total: -124.34 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.09 Total: -32.49 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.90 Total: 48.19 kcal Total: -88.76 2.97 -85.79 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707189638.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.224 kcal (2) G-P(sol) polarization free energy of solvation -88.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds