Wall clock time and date at job start Sat Apr 11 2020 05:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00091 * 2 1 4 4 C 1.52999 * 112.84950 * 65.48526 * 3 2 1 5 5 C 1.50708 * 109.47127 * 49.73193 * 4 3 2 6 6 O 1.21285 * 119.99760 * 5.87234 * 5 4 3 7 7 N 1.34769 * 120.00073 * 185.87067 * 5 4 3 8 8 C 1.46502 * 120.00063 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47468 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.46981 * 179.97438 * 9 8 7 11 11 N 1.46903 * 109.46722 * 180.02562 * 10 9 8 12 12 C 1.46904 * 110.99893 * 170.00041 * 11 10 9 13 13 C 1.53243 * 109.33848 * 187.25057 * 12 11 10 14 14 N 1.47080 * 108.52288 * 306.17102 * 13 12 11 15 15 C 1.36931 * 120.88217 * 231.18721 * 14 13 12 16 16 H 1.08005 * 120.00187 * 29.62810 * 15 14 13 17 17 C 1.38806 * 120.00112 * 209.36154 * 15 14 13 18 18 N 1.31615 * 120.00347 * 18.00490 * 17 15 14 19 19 Si 1.86809 * 119.99928 * 198.01386 * 17 15 14 20 20 H 1.48497 * 109.47039 * 94.96242 * 19 17 15 21 21 H 1.48508 * 109.46807 * 214.96560 * 19 17 15 22 22 H 1.48499 * 109.46742 * 334.96087 * 19 17 15 23 23 C 1.47079 * 118.23779 * 51.45751 * 14 13 12 24 24 C 1.46898 * 111.00155 * 294.30087 * 11 10 9 25 25 C 1.53781 * 113.69382 * 196.75605 * 3 2 1 26 26 C 1.53779 * 87.08135 * 89.12435 * 25 3 2 27 27 C 1.53779 * 87.08009 * 25.43575 * 26 25 3 28 28 H 1.08997 * 109.47309 * 304.06776 * 1 2 3 29 29 H 1.09006 * 109.47241 * 64.06698 * 1 2 3 30 30 H 1.08996 * 109.47021 * 184.06543 * 1 2 3 31 31 H 1.08991 * 109.47788 * 289.73322 * 4 3 2 32 32 H 1.08998 * 109.47164 * 169.72381 * 4 3 2 33 33 H 0.96998 * 120.00460 * 359.97438 * 7 5 4 34 34 H 1.09003 * 109.47324 * 59.99566 * 8 7 5 35 35 H 1.09002 * 109.47034 * 300.00003 * 8 7 5 36 36 H 1.08998 * 109.46541 * 59.99916 * 9 8 7 37 37 H 1.08993 * 109.46925 * 300.00199 * 9 8 7 38 38 H 1.08998 * 109.47410 * 60.00622 * 10 9 8 39 39 H 1.09002 * 109.47420 * 300.00041 * 10 9 8 40 40 H 1.09003 * 109.48931 * 67.29141 * 12 11 10 41 41 H 1.08993 * 109.51378 * 307.22679 * 12 11 10 42 42 H 1.08994 * 109.62327 * 186.46107 * 13 12 11 43 43 H 1.09001 * 109.62485 * 65.88377 * 13 12 11 44 44 H 0.97000 * 120.00854 * 180.02562 * 18 17 15 45 45 H 1.09008 * 109.62861 * 68.24897 * 23 14 13 46 46 H 1.08995 * 109.63071 * 188.83165 * 23 14 13 47 47 H 1.09002 * 109.49218 * 292.71341 * 24 11 10 48 48 H 1.09007 * 109.48994 * 52.78611 * 24 11 10 49 49 H 1.09001 * 113.61669 * 203.67508 * 25 3 2 50 50 H 1.09004 * 113.61040 * 334.58216 * 25 3 2 51 51 H 1.08997 * 113.62007 * 270.88942 * 26 25 3 52 52 H 1.09001 * 113.61118 * 139.97792 * 26 25 3 53 53 H 1.09003 * 113.61532 * 220.01688 * 27 26 25 54 54 H 1.09003 * 113.69420 * 89.12259 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7175 2.0861 1.2828 5 6 2.0430 1.2283 2.4784 6 8 2.5665 0.1453 2.3231 7 7 1.7526 1.6645 3.7200 8 6 2.0696 0.8308 4.8822 9 6 1.6414 1.5540 6.1607 10 6 1.9720 0.6830 7.3743 11 7 1.5602 1.3771 8.6018 12 6 1.6412 0.4829 9.7646 13 6 1.0357 1.1828 10.9860 14 7 1.6990 2.4846 11.1552 15 6 2.2282 2.8519 12.3634 16 1 2.6019 2.0984 13.0409 17 6 2.2897 4.1933 12.7152 18 7 1.5435 5.0743 12.0833 19 14 3.4317 4.7481 14.0855 20 1 4.7181 5.2068 13.5024 21 1 2.8010 5.8652 14.8336 22 1 3.6837 3.6134 15.0097 23 6 1.7733 3.3838 9.9937 24 6 2.3549 2.5949 8.8098 25 6 3.4934 1.3215 -0.4060 26 6 3.0130 1.4775 -1.8584 27 6 1.7313 2.1040 -1.2843 28 1 -0.3634 0.5756 0.8513 29 1 -0.3634 0.4494 -0.9242 30 1 -0.3633 -1.0250 0.0729 31 1 0.6629 2.3602 1.3088 32 1 2.3282 2.9887 1.3063 33 1 1.3344 2.5308 3.8442 34 1 3.1430 0.6437 4.9132 35 1 1.5376 -0.1174 4.8051 36 1 0.5681 1.7414 6.1299 37 1 2.1737 2.5020 6.2375 38 1 3.0452 0.4951 7.4053 39 1 1.4393 -0.2649 7.2972 40 1 2.6848 0.2401 9.9647 41 1 1.0876 -0.4331 9.5587 42 1 1.1957 0.5721 11.8745 43 1 -0.0325 1.3336 10.8294 44 1 1.5866 6.0117 12.3289 45 1 0.7747 3.7422 9.7435 46 1 2.4212 4.2290 10.2258 47 1 3.3886 2.3226 9.0232 48 1 2.3187 3.2107 7.9111 49 1 4.0393 2.1874 -0.0313 50 1 4.0085 0.3800 -0.2152 51 1 2.8449 0.5282 -2.3671 52 1 3.6139 2.1726 -2.4448 53 1 0.8238 1.7942 -1.8026 54 1 1.7940 3.1838 -1.1493 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713067523.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:55 Heat of formation + Delta-G solvation = -52.500675 kcal Electronic energy + Delta-G solvation = -29748.940665 eV Core-core repulsion = 25721.420468 eV Total energy + Delta-G solvation = -4027.520197 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -41.42883 -39.98982 -39.61360 -36.98473 -36.47370 -35.73787 -33.68549 -32.34098 -31.63026 -30.94726 -28.43093 -27.93935 -26.42235 -25.99126 -24.62759 -24.26093 -23.59158 -22.19705 -21.19240 -20.81489 -20.33973 -18.72741 -18.03044 -17.49069 -17.08840 -17.04613 -16.64053 -16.45475 -16.05499 -15.93615 -15.80565 -15.46564 -15.30845 -15.23341 -15.03102 -14.89957 -14.63379 -14.43724 -14.34477 -13.56957 -13.36101 -13.28743 -13.03968 -12.94663 -12.82382 -12.63858 -12.53636 -12.44450 -12.30605 -12.29550 -12.07118 -11.96248 -11.90819 -11.79030 -11.66868 -11.48725 -11.30917 -11.05348 -10.81783 -10.59642 -10.26508 -10.03040 -9.26773 -8.66036 -7.89204 -5.35593 1.45676 1.46852 1.56417 1.75315 2.19935 2.49735 2.82422 3.01958 3.25722 3.50835 3.66382 3.68684 3.73432 3.93091 3.95460 4.02052 4.12309 4.21224 4.34624 4.36842 4.39883 4.41450 4.47391 4.48695 4.61044 4.62364 4.63015 4.64875 4.67376 4.70768 4.79340 4.81466 4.84743 4.89790 4.90452 5.02443 5.06636 5.14854 5.16060 5.21413 5.26650 5.28247 5.34877 5.41318 5.51013 5.61850 5.65611 6.18712 6.28126 6.37698 6.41829 6.63440 7.12833 7.36844 7.82771 8.38644 9.17367 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.025280 B = 0.001664 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.317710 B =16822.264754 C =17343.889117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.375 6.375 3 C 0.096 3.904 4 C -0.155 4.155 5 C 0.505 3.495 6 O -0.566 6.566 7 N -0.726 5.726 8 C 0.131 3.869 9 C -0.113 4.113 10 C 0.059 3.941 11 N -0.540 5.540 12 C 0.055 3.945 13 C 0.143 3.857 14 N -0.614 5.614 15 C -0.268 4.268 16 H 0.064 0.936 17 C -0.047 4.047 18 N -0.932 5.932 19 Si 0.967 3.033 20 H -0.285 1.285 21 H -0.293 1.293 22 H -0.269 1.269 23 C 0.187 3.813 24 C 0.050 3.950 25 C -0.129 4.129 26 C -0.134 4.134 27 C -0.152 4.152 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.131 0.869 33 H 0.414 0.586 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.029 0.971 39 H 0.085 0.915 40 H 0.021 0.979 41 H 0.094 0.906 42 H 0.058 0.942 43 H 0.017 0.983 44 H 0.251 0.749 45 H 0.002 0.998 46 H 0.049 0.951 47 H 0.015 0.985 48 H 0.087 0.913 49 H 0.105 0.895 50 H 0.050 0.950 51 H 0.071 0.929 52 H 0.085 0.915 53 H 0.077 0.923 54 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.316 -4.836 -28.419 28.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.294 6.294 3 C 0.056 3.944 4 C -0.195 4.195 5 C 0.293 3.707 6 O -0.444 6.444 7 N -0.379 5.379 8 C 0.006 3.994 9 C -0.151 4.151 10 C -0.069 4.069 11 N -0.265 5.265 12 C -0.075 4.075 13 C 0.018 3.982 14 N -0.338 5.338 15 C -0.398 4.398 16 H 0.081 0.919 17 C -0.243 4.243 18 N -0.578 5.578 19 Si 0.795 3.205 20 H -0.212 1.212 21 H -0.220 1.220 22 H -0.193 1.193 23 C 0.061 3.939 24 C -0.079 4.079 25 C -0.166 4.166 26 C -0.171 4.171 27 C -0.189 4.189 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.133 0.867 32 H 0.149 0.851 33 H 0.250 0.750 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.047 0.953 39 H 0.103 0.897 40 H 0.039 0.961 41 H 0.112 0.888 42 H 0.077 0.923 43 H 0.035 0.965 44 H 0.060 0.940 45 H 0.020 0.980 46 H 0.068 0.932 47 H 0.033 0.967 48 H 0.105 0.895 49 H 0.124 0.876 50 H 0.068 0.932 51 H 0.089 0.911 52 H 0.104 0.896 53 H 0.095 0.905 54 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.338 -5.507 -28.521 29.079 hybrid contribution 0.887 0.667 1.365 1.759 sum -0.451 -4.840 -27.156 27.588 Atomic orbital electron populations 1.22829 0.80742 1.02957 1.00682 1.88025 1.20218 1.26424 1.94703 1.22425 0.95743 0.83700 0.92578 1.22310 1.05941 0.99806 0.91396 1.21084 0.77790 0.86957 0.84898 1.90738 1.43592 1.23684 1.86341 1.46015 1.63600 1.22858 1.05439 1.21087 0.99911 0.94065 0.84290 1.21628 1.02951 0.98939 0.91564 1.22020 0.98328 0.97576 0.88949 1.61899 1.55192 1.06476 1.02915 1.22463 0.98727 0.95480 0.90783 1.21135 0.94347 0.86945 0.95809 1.44399 1.65827 1.16262 1.07343 1.19493 1.32631 0.91807 0.95889 0.91854 1.25829 1.00269 0.97284 1.00929 1.70188 1.40115 1.01904 1.45571 0.85267 0.78541 0.77675 0.79051 1.21226 1.21967 1.19346 1.20672 0.96734 0.91761 0.84730 1.22702 0.93750 0.92386 0.99103 1.23054 0.94276 1.02359 0.96956 1.22738 0.97479 1.01179 0.95696 1.23552 0.98893 1.01183 0.95284 0.93930 0.92312 0.89923 0.86651 0.85086 0.74966 0.92885 0.92307 0.90036 0.91056 0.95317 0.89663 0.96058 0.88783 0.92322 0.96540 0.93979 0.97960 0.93245 0.96664 0.89473 0.87626 0.93156 0.91071 0.89610 0.90479 0.86796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.63 113.37 1.21 1.56 16 2 O -0.37 -8.07 9.12 -129.59 -1.18 -9.25 16 3 C 0.10 1.47 0.40 -10.27 0.00 1.47 16 4 C -0.15 -1.85 4.72 29.85 0.14 -1.71 16 5 C 0.51 10.15 7.63 87.66 0.67 10.82 16 6 O -0.57 -16.89 14.97 16.35 0.24 -16.64 16 7 N -0.73 -12.07 5.56 -463.05 -2.57 -14.64 16 8 C 0.13 2.60 5.67 86.38 0.49 3.09 16 9 C -0.11 -2.27 5.26 30.59 0.16 -2.11 16 10 C 0.06 1.47 4.96 86.30 0.43 1.90 16 11 N -0.54 -17.76 4.63 -894.29 -4.14 -21.90 16 12 C 0.05 1.87 5.62 86.38 0.49 2.35 16 13 C 0.14 6.09 6.69 86.35 0.58 6.67 16 14 N -0.61 -31.58 3.02 -697.25 -2.10 -33.68 16 15 C -0.27 -14.99 9.59 84.03 0.81 -14.19 16 16 H 0.06 3.47 7.89 -2.91 -0.02 3.45 16 17 C -0.05 -2.65 4.88 84.86 0.41 -2.24 16 18 N -0.93 -55.34 11.41 21.65 0.25 -55.09 16 19 Si 0.97 44.97 29.59 68.60 2.03 47.00 16 20 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 C 0.19 9.10 5.43 86.50 0.47 9.57 16 24 C 0.05 1.86 5.48 86.54 0.47 2.33 16 25 C -0.13 -2.05 7.28 31.12 0.23 -1.82 16 26 C -0.13 -1.60 8.02 31.12 0.25 -1.35 16 27 C -0.15 -1.45 7.21 31.12 0.22 -1.22 16 28 H 0.04 0.57 6.91 -2.39 -0.02 0.55 16 29 H 0.06 0.62 6.83 -2.38 -0.02 0.60 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.12 0.86 7.37 -2.39 -0.02 0.84 16 32 H 0.13 0.89 7.96 -2.39 -0.02 0.87 16 33 H 0.41 4.49 8.47 -92.71 -0.79 3.71 16 34 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.07 1.46 6.40 -2.39 -0.02 1.44 16 38 H 0.03 0.73 8.12 -2.39 -0.02 0.71 16 39 H 0.08 1.89 7.97 -2.39 -0.02 1.87 16 40 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.09 2.62 7.99 -2.39 -0.02 2.60 16 42 H 0.06 2.40 7.95 -2.39 -0.02 2.38 16 43 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 45 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 46 H 0.05 2.69 6.35 -2.39 -0.02 2.67 16 47 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.09 2.78 6.16 -2.38 -0.01 2.77 16 49 H 0.11 1.27 7.98 -2.39 -0.02 1.26 16 50 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 51 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 52 H 0.09 0.73 8.14 -2.39 -0.02 0.72 16 53 H 0.08 0.70 6.79 -2.39 -0.02 0.68 16 54 H 0.11 0.57 8.10 -2.39 -0.02 0.55 16 Total: -1.00 -74.58 416.24 -0.37 -74.95 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.08 Total: 14.13 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 7.02 Total: 15.13 kcal Atomic # 7 Polarization: -116.75 SS G_CDS: -8.57 Total: -125.31 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.94 Total: -25.89 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -74.58 -0.37 -74.95 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713067523.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.450 kcal (2) G-P(sol) polarization free energy of solvation -74.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds