Wall clock time and date at job start Sat Apr 11 2020 05:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34778 * 119.99336 * 2 1 4 4 O 1.21274 * 120.00389 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99632 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47520 * 180.02562 * 5 3 2 7 7 C 1.52993 * 109.47608 * 180.02562 * 6 5 3 8 8 C 1.52996 * 109.47515 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47481 * 180.02562 * 8 7 6 10 10 O 1.21274 * 119.99925 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99932 * 180.02562 * 9 8 7 12 12 C 1.46927 * 120.63055 * 359.97438 * 11 9 8 13 13 C 1.53187 * 108.77384 * 126.37494 * 12 11 9 14 14 C 1.53047 * 109.31303 * 54.63345 * 13 12 11 15 15 C 1.53035 * 109.53759 * 298.63823 * 14 13 12 16 16 H 1.09001 * 109.49669 * 301.40756 * 15 14 13 17 17 C 1.53001 * 109.49914 * 181.31913 * 15 14 13 18 18 N 1.46500 * 109.47499 * 64.99312 * 17 15 14 19 19 C 1.46502 * 119.99874 * 270.00674 * 18 17 15 20 20 C 1.36933 * 119.99924 * 89.99881 * 18 17 15 21 21 H 1.07999 * 119.99648 * 20.40252 * 20 18 17 22 22 C 1.38811 * 120.00444 * 200.39517 * 20 18 17 23 23 N 1.31624 * 119.99587 * 15.06735 * 22 20 18 24 24 Si 1.86798 * 120.00282 * 195.06684 * 22 20 18 25 25 H 1.48506 * 109.47043 * 85.00102 * 24 22 20 26 26 H 1.48496 * 109.47125 * 204.99728 * 24 22 20 27 27 H 1.48498 * 109.47225 * 325.00155 * 24 22 20 28 28 C 1.46923 * 120.62901 * 179.97438 * 11 9 8 29 29 H 1.08996 * 109.47285 * 59.99603 * 1 2 3 30 30 H 1.09005 * 109.46842 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46879 * 299.99472 * 1 2 3 32 32 H 0.96992 * 120.00090 * 180.02562 * 2 1 3 33 33 H 1.09003 * 109.47318 * 60.00326 * 5 3 2 34 34 H 1.09002 * 109.47498 * 300.00306 * 5 3 2 35 35 H 1.09003 * 109.46585 * 59.99845 * 6 5 3 36 36 H 1.09002 * 109.46959 * 300.00604 * 6 5 3 37 37 H 1.08994 * 109.47541 * 59.99756 * 7 6 5 38 38 H 1.09009 * 109.46850 * 299.99929 * 7 6 5 39 39 H 1.09002 * 109.47152 * 59.99837 * 8 7 6 40 40 H 1.09002 * 109.46701 * 300.00030 * 8 7 6 41 41 H 1.09001 * 109.58742 * 6.58538 * 12 11 9 42 42 H 1.09007 * 109.58635 * 246.16228 * 12 11 9 43 43 H 1.08992 * 109.49839 * 294.68167 * 13 12 11 44 44 H 1.08995 * 109.49653 * 174.58201 * 13 12 11 45 45 H 1.08998 * 109.45901 * 58.65750 * 14 13 12 46 46 H 1.08999 * 109.46160 * 178.61588 * 14 13 12 47 47 H 1.09000 * 109.47239 * 185.00080 * 17 15 14 48 48 H 1.09009 * 109.46702 * 304.99507 * 17 15 14 49 49 H 1.08996 * 109.47194 * 95.24067 * 19 18 17 50 50 H 1.09006 * 109.46760 * 215.23335 * 19 18 17 51 51 H 1.08990 * 109.47497 * 335.23313 * 19 18 17 52 52 H 0.96999 * 119.99726 * 179.97438 * 23 22 20 53 53 H 1.08999 * 109.58609 * 353.40905 * 28 11 9 54 54 H 1.08997 * 109.59273 * 113.69149 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6458 1.1674 -0.0006 6 6 4.1558 2.6098 0.0002 7 6 5.6858 2.6099 -0.0011 8 6 6.1957 4.0524 0.0004 9 6 7.7028 4.0525 -0.0015 10 8 8.3092 3.0023 -0.0033 11 7 8.3766 5.2198 -0.0001 12 6 7.6559 6.5002 0.0026 13 6 8.1646 7.3498 1.1713 14 6 9.6860 7.4850 1.0742 15 6 10.3299 6.0998 1.1677 16 1 10.0466 5.6297 2.1094 17 6 11.8522 6.2389 1.1036 18 7 12.3263 6.9669 2.2832 19 6 12.4367 8.4273 2.2474 20 6 12.6661 6.2822 3.4194 21 1 12.9049 5.2304 3.3649 22 6 12.7038 6.9401 4.6412 23 7 12.1383 8.1217 4.7700 24 14 13.5568 6.1486 6.1023 25 1 15.0090 6.4554 6.0535 26 1 12.9800 6.6836 7.3617 27 1 13.3599 4.6775 6.0533 28 6 9.8457 5.2360 -0.0014 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.9500 -0.8400 -0.0004 33 1 4.0089 0.6538 -0.8909 34 1 4.0096 0.6533 0.8891 35 1 3.7928 3.1230 0.8907 36 1 3.7921 3.1243 -0.8893 37 1 6.0485 2.0969 -0.8917 38 1 6.0498 2.0954 0.8883 39 1 5.8331 4.5651 0.8913 40 1 5.8316 4.5673 -0.8887 41 1 6.5878 6.3180 0.1209 42 1 7.8376 7.0237 -0.9361 43 1 7.9016 6.8680 2.1129 44 1 7.7081 8.3386 1.1280 45 1 9.9497 7.9444 0.1216 46 1 10.0480 8.1096 1.8909 47 1 12.3070 5.2485 1.0807 48 1 12.1294 6.7868 0.2029 49 1 11.5322 8.8703 2.6640 50 1 13.2991 8.7410 2.8356 51 1 12.5610 8.7570 1.2160 52 1 12.1643 8.5812 5.6238 53 1 10.2225 4.2198 0.1145 54 1 10.2058 5.6542 -0.9413 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713136793.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:08 Heat of formation + Delta-G solvation = -96.193565 kcal Electronic energy + Delta-G solvation = -29713.823470 eV Core-core repulsion = 25684.408608 eV Total energy + Delta-G solvation = -4029.414863 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 3.15 seconds Orbital eigenvalues (eV) -41.24629 -40.65775 -39.00590 -37.17935 -36.19867 -35.53364 -34.41011 -32.94094 -32.38814 -31.54647 -28.44528 -28.11812 -27.23699 -26.50342 -25.04324 -23.79071 -22.65362 -22.14952 -21.31357 -21.03833 -19.74731 -18.69062 -18.16941 -17.93305 -17.18236 -17.04334 -16.81992 -16.54102 -16.49721 -15.93111 -15.61069 -15.45894 -15.09933 -14.95539 -14.78025 -14.50891 -14.34449 -14.26896 -13.82256 -13.70723 -13.41630 -13.29213 -13.22517 -13.09928 -12.91357 -12.76657 -12.63221 -12.44708 -12.26869 -12.20091 -12.10602 -12.07877 -11.95436 -11.88750 -11.57589 -11.49711 -11.47990 -11.15552 -10.93682 -10.75110 -10.57958 -10.11574 -9.58336 -8.74853 -7.82393 -5.26050 1.43904 1.44837 1.52733 1.65782 1.67109 2.07560 2.35988 2.50913 3.30300 3.54749 3.70767 3.82821 3.89148 3.91557 4.04142 4.05729 4.12064 4.30456 4.38782 4.41330 4.44339 4.46061 4.54211 4.60862 4.61243 4.64979 4.70000 4.79344 4.84878 4.85355 4.87654 4.89162 4.91030 4.94944 4.97240 5.00407 5.09159 5.25069 5.29292 5.34259 5.36819 5.43497 5.50229 5.52298 5.59560 5.62885 5.66622 5.83898 6.33836 6.50557 6.57100 7.17325 7.22378 7.28932 7.91134 8.32347 9.20519 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015873 B = 0.001884 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.601241 B =14859.956236 C =15594.072096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.729 5.729 3 C 0.505 3.495 4 O -0.589 6.589 5 C -0.137 4.137 6 C -0.097 4.097 7 C -0.096 4.096 8 C -0.134 4.134 9 C 0.504 3.496 10 O -0.591 6.591 11 N -0.612 5.612 12 C 0.110 3.890 13 C -0.129 4.129 14 C -0.106 4.106 15 C -0.105 4.105 16 H 0.026 0.974 17 C 0.155 3.845 18 N -0.613 5.613 19 C 0.181 3.819 20 C -0.259 4.259 21 H 0.063 0.937 22 C -0.052 4.052 23 N -0.933 5.933 24 Si 0.961 3.039 25 H -0.284 1.284 26 H -0.295 1.295 27 H -0.275 1.275 28 C 0.125 3.875 29 H 0.048 0.952 30 H 0.108 0.892 31 H 0.045 0.955 32 H 0.419 0.581 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.105 0.895 40 H 0.119 0.881 41 H 0.110 0.890 42 H 0.092 0.908 43 H 0.040 0.960 44 H 0.093 0.907 45 H 0.072 0.928 46 H 0.046 0.954 47 H 0.037 0.963 48 H 0.065 0.935 49 H 0.013 0.987 50 H 0.009 0.991 51 H 0.030 0.970 52 H 0.247 0.753 53 H 0.064 0.936 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.188 -11.898 -15.035 28.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.381 5.381 3 C 0.293 3.707 4 O -0.470 6.470 5 C -0.176 4.176 6 C -0.135 4.135 7 C -0.134 4.134 8 C -0.173 4.173 9 C 0.294 3.706 10 O -0.472 6.472 11 N -0.344 5.344 12 C -0.012 4.012 13 C -0.168 4.168 14 C -0.144 4.144 15 C -0.127 4.127 16 H 0.044 0.956 17 C 0.028 3.972 18 N -0.336 5.336 19 C 0.036 3.964 20 C -0.390 4.390 21 H 0.081 0.919 22 C -0.247 4.247 23 N -0.580 5.580 24 Si 0.790 3.210 25 H -0.211 1.211 26 H -0.221 1.221 27 H -0.201 1.201 28 C 0.001 3.999 29 H 0.067 0.933 30 H 0.127 0.873 31 H 0.064 0.936 32 H 0.256 0.744 33 H 0.134 0.866 34 H 0.128 0.872 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.123 0.877 40 H 0.138 0.862 41 H 0.128 0.872 42 H 0.111 0.889 43 H 0.059 0.941 44 H 0.111 0.889 45 H 0.090 0.910 46 H 0.065 0.935 47 H 0.056 0.944 48 H 0.083 0.917 49 H 0.031 0.969 50 H 0.027 0.973 51 H 0.049 0.951 52 H 0.056 0.944 53 H 0.083 0.917 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -21.319 -11.604 -14.915 28.489 hybrid contribution 0.880 -0.505 1.537 1.842 sum -20.439 -12.108 -13.378 27.264 Atomic orbital electron populations 1.21638 0.79357 1.04031 1.01185 1.45845 1.08265 1.09018 1.74970 1.21293 0.91485 0.83410 0.74546 1.90689 1.71684 1.33116 1.51462 1.21702 0.89604 0.99896 1.06446 1.21247 0.93669 0.95591 1.02987 1.21264 0.94540 0.94783 1.02862 1.21753 0.88906 1.00573 1.06078 1.21455 0.91811 0.82598 0.74692 1.90648 1.71660 1.32528 1.52385 1.48329 1.06866 1.06983 1.72216 1.21993 0.97371 0.82617 0.99192 1.21875 0.95797 1.00966 0.98122 1.21480 0.95152 0.96016 1.01705 1.21947 0.98103 0.96252 0.96408 0.95576 1.20951 0.91366 0.95606 0.89246 1.44125 1.75569 1.02982 1.10883 1.20585 0.98231 0.82664 0.94925 1.19458 1.38563 0.94510 0.86434 0.91948 1.25618 1.01260 0.98203 0.99582 1.70220 1.47074 1.16488 1.24252 0.85367 0.78382 0.78036 0.79182 1.21124 1.22106 1.20075 1.21495 0.79792 1.00202 0.98393 0.93333 0.87321 0.93570 0.74432 0.86581 0.87159 0.92164 0.91363 0.91366 0.92479 0.87711 0.86247 0.87163 0.88946 0.94108 0.88867 0.90962 0.93485 0.94420 0.91705 0.96906 0.97251 0.95115 0.94417 0.91709 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 10.70 127.77 1.37 2.10 16 2 N -0.73 -7.08 5.71 -484.51 -2.77 -9.85 16 3 C 0.50 8.21 7.83 87.66 0.69 8.90 16 4 O -0.59 -15.17 15.98 -3.01 -0.05 -15.22 16 5 C -0.14 -1.56 5.70 29.85 0.17 -1.39 16 6 C -0.10 -1.47 4.50 30.59 0.14 -1.33 16 7 C -0.10 -1.69 4.50 30.59 0.14 -1.55 16 8 C -0.13 -2.42 4.05 29.85 0.12 -2.30 16 9 C 0.50 13.93 7.70 87.66 0.67 14.60 16 10 O -0.59 -21.29 15.39 -3.01 -0.05 -21.34 16 11 N -0.61 -16.26 2.97 -818.88 -2.43 -18.69 16 12 C 0.11 2.14 6.34 86.36 0.55 2.69 16 13 C -0.13 -3.32 6.08 30.67 0.19 -3.13 16 14 C -0.11 -3.47 4.78 30.62 0.15 -3.32 16 15 C -0.11 -3.87 2.55 -10.71 -0.03 -3.90 16 16 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 17 C 0.15 6.26 5.18 86.38 0.45 6.71 16 18 N -0.61 -30.79 2.75 -726.94 -2.00 -32.79 16 19 C 0.18 8.81 7.86 127.77 1.00 9.81 16 20 C -0.26 -14.63 9.67 84.03 0.81 -13.81 16 21 H 0.06 3.51 7.86 -2.91 -0.02 3.49 16 22 C -0.05 -2.95 5.06 84.86 0.43 -2.52 16 23 N -0.93 -55.55 10.67 21.65 0.23 -55.32 16 24 Si 0.96 46.50 29.58 68.60 2.03 48.53 16 25 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 26 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 27 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 28 C 0.12 3.82 5.72 86.37 0.49 4.32 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.11 0.21 8.14 -2.38 -0.02 0.19 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.42 1.19 8.83 -92.71 -0.82 0.38 16 33 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 36 H 0.07 1.08 8.10 -2.39 -0.02 1.06 16 37 H 0.07 1.24 8.10 -2.39 -0.02 1.22 16 38 H 0.06 1.17 8.10 -2.38 -0.02 1.15 16 39 H 0.10 1.70 7.69 -2.39 -0.02 1.68 16 40 H 0.12 1.52 7.94 -2.39 -0.02 1.50 16 41 H 0.11 1.52 5.93 -2.39 -0.01 1.51 16 42 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 43 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.05 1.95 5.46 -2.39 -0.01 1.93 16 47 H 0.04 1.55 8.03 -2.39 -0.02 1.53 16 48 H 0.06 2.26 7.86 -2.38 -0.02 2.24 16 49 H 0.01 0.67 5.89 -2.39 -0.01 0.66 16 50 H 0.01 0.48 7.23 -2.38 -0.02 0.46 16 51 H 0.03 1.25 7.83 -2.39 -0.02 1.24 16 52 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 53 H 0.06 2.29 7.00 -2.39 -0.02 2.27 16 54 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -79.90 420.45 2.35 -77.55 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.05 Total: 11.27 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 7.34 Total: 15.87 kcal Atomic # 7 Polarization: -109.69 SS G_CDS: -6.97 Total: -116.66 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -0.09 Total: -36.56 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -79.90 2.35 -77.55 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713136793.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.648 kcal (2) G-P(sol) polarization free energy of solvation -79.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.15 seconds