Wall clock time and date at job start Sat Apr 11 2020 05:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46896 * 110.99976 * 2 1 4 4 C 1.52992 * 109.46954 * 293.94731 * 3 2 1 5 5 N 1.46506 * 109.47161 * 180.02562 * 4 3 2 6 6 C 1.34773 * 119.99968 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00360 * 359.73034 * 6 5 4 8 8 C 1.50706 * 120.00081 * 180.02562 * 6 5 4 9 9 C 1.53014 * 109.46882 * 299.72845 * 8 6 5 10 10 C 1.52991 * 109.46034 * 164.04647 * 9 8 6 11 11 C 1.52989 * 109.50626 * 315.98336 * 10 9 8 12 12 C 1.53005 * 109.46557 * 112.94043 * 11 10 9 13 13 C 1.53007 * 109.43118 * 284.04046 * 12 11 10 14 14 C 1.52991 * 109.48598 * 75.96225 * 13 12 11 15 15 C 1.52992 * 109.50474 * 247.06491 * 14 13 12 16 16 C 1.46909 * 110.99440 * 123.95145 * 2 1 3 17 17 C 1.50694 * 109.47356 * 66.04619 * 16 2 1 18 18 O 1.21297 * 119.99699 * 359.97438 * 17 16 2 19 19 N 1.34772 * 120.00511 * 179.97438 * 17 16 2 20 20 C 1.37097 * 120.00401 * 180.02562 * 19 17 16 21 21 H 1.07991 * 120.00217 * 359.97438 * 20 19 17 22 22 C 1.38954 * 119.99854 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99931 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99989 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46817 * 90.00263 * 24 22 20 26 26 H 1.48496 * 109.47453 * 210.00381 * 24 22 20 27 27 H 1.48504 * 109.47018 * 330.00816 * 24 22 20 28 28 H 1.09002 * 109.46625 * 60.00128 * 1 2 3 29 29 H 1.09002 * 109.47496 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47186 * 300.00377 * 1 2 3 31 31 H 1.09004 * 109.46619 * 173.95149 * 3 2 1 32 32 H 1.08993 * 109.47481 * 53.95131 * 3 2 1 33 33 H 1.09004 * 109.47116 * 60.00722 * 4 3 2 34 34 H 1.08998 * 109.47794 * 300.00634 * 4 3 2 35 35 H 0.96998 * 119.99507 * 0.02562 * 5 4 3 36 36 H 1.08998 * 109.47012 * 59.72084 * 8 6 5 37 37 H 1.09006 * 109.47161 * 284.04187 * 9 8 6 38 38 H 1.09005 * 109.47439 * 44.04373 * 9 8 6 39 39 H 1.09006 * 109.46362 * 195.97820 * 10 9 8 40 40 H 1.08996 * 109.45727 * 75.99416 * 10 9 8 41 41 H 1.08998 * 109.47344 * 352.94027 * 11 10 9 42 42 H 1.09003 * 109.47098 * 232.93591 * 11 10 9 43 43 H 1.09003 * 109.47957 * 164.05630 * 12 11 10 44 44 H 1.08995 * 109.48746 * 44.03166 * 12 11 10 45 45 H 1.09006 * 109.46727 * 315.95936 * 13 12 11 46 46 H 1.08998 * 109.46763 * 195.96752 * 13 12 11 47 47 H 1.08997 * 109.46353 * 127.05556 * 14 13 12 48 48 H 1.09003 * 109.46203 * 7.07660 * 14 13 12 49 49 H 1.08996 * 109.47799 * 284.01480 * 15 14 13 50 50 H 1.08999 * 109.47104 * 164.00760 * 15 14 13 51 51 H 1.09002 * 109.46739 * 186.04947 * 16 2 1 52 52 H 1.08997 * 109.47209 * 306.04057 * 16 2 1 53 53 H 0.97003 * 119.99409 * 359.97438 * 19 17 16 54 54 H 0.97005 * 120.00048 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6316 2.0573 -1.3183 5 7 2.1571 3.4248 -1.3186 6 6 1.9568 4.2235 -2.3855 7 8 1.3458 3.8085 -3.3475 8 6 2.4979 5.6300 -2.3861 9 6 1.8835 6.4133 -1.2241 10 6 2.7020 7.6816 -0.9750 11 6 4.1936 7.3446 -1.0227 12 6 4.8298 8.0178 -2.2405 13 6 4.4502 7.2452 -3.5054 14 6 3.0027 7.5649 -3.8837 15 6 2.1404 6.3135 -3.7075 16 6 1.9954 -0.7660 1.1377 17 6 1.6368 -2.2204 0.9731 18 8 1.0046 -2.5831 0.0036 19 7 2.0186 -3.1181 1.9030 20 6 1.6929 -4.4413 1.7529 21 1 1.1300 -4.7643 0.8898 22 6 2.0870 -5.3669 2.7114 23 7 2.7716 -4.9737 3.7620 24 14 1.6426 -7.1697 2.5074 25 1 2.7189 -7.8626 1.7545 26 1 1.4914 -7.7968 3.8449 27 1 0.3642 -7.2828 1.7602 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 3.0797 1.3443 0.1083 32 1 1.5611 1.9273 0.8308 33 1 0.5473 2.0844 -1.4266 34 1 2.0659 1.5013 -2.1492 35 1 2.6498 3.7551 -0.5511 36 1 3.5817 5.6025 -2.2728 37 1 0.8575 6.6857 -1.4717 38 1 1.8887 5.7952 -0.3262 39 1 2.4527 8.0881 0.0052 40 1 2.4715 8.4192 -1.7436 41 1 4.3199 6.2645 -1.0973 42 1 4.6767 7.7050 -0.1145 43 1 5.9140 8.0217 -2.1286 44 1 4.4688 9.0433 -2.3189 45 1 4.5498 6.1754 -3.3213 46 1 5.1117 7.5366 -4.3213 47 1 2.9624 7.8905 -4.9231 48 1 2.6260 8.3594 -3.2394 49 1 2.3241 5.6264 -4.5334 50 1 1.0877 6.5962 -3.6973 51 1 3.0797 -0.6611 1.1758 52 1 1.5611 -0.3872 2.0629 53 1 2.5246 -2.8280 2.6781 54 1 3.0464 -5.6198 4.4314 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713458938.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:12 Heat of formation + Delta-G solvation = -99.110307 kcal Electronic energy + Delta-G solvation = -29719.954618 eV Core-core repulsion = 25690.413276 eV Total energy + Delta-G solvation = -4029.541342 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.49706 -40.39428 -39.36371 -38.14045 -36.02875 -35.53227 -33.96556 -33.64877 -33.27016 -30.78311 -29.17752 -28.04835 -26.96611 -26.75633 -25.26704 -23.10164 -22.34968 -22.01787 -21.55584 -20.97349 -20.03354 -19.84988 -18.44864 -17.72762 -17.38239 -16.93830 -16.58621 -16.57797 -16.19863 -15.92452 -15.73908 -15.31444 -15.04704 -15.03741 -15.00861 -14.90886 -14.42440 -14.28193 -14.09152 -13.78758 -13.62907 -13.45004 -13.04018 -12.94914 -12.87426 -12.60051 -12.55759 -12.54507 -12.40511 -12.25598 -12.15748 -12.09800 -11.98808 -11.93630 -11.64306 -11.45485 -11.26249 -10.94496 -10.73447 -10.51857 -10.28638 -10.10604 -9.98772 -9.24534 -8.45820 -5.93953 1.38126 1.41955 1.54267 1.63502 2.02337 2.07111 2.30987 2.91108 3.21279 3.42500 3.60917 3.74541 3.83058 3.88629 4.04306 4.07389 4.18279 4.23682 4.25785 4.28905 4.35383 4.35844 4.39919 4.43572 4.46530 4.53083 4.62985 4.63308 4.81241 4.84858 4.88180 4.93924 5.00107 5.02152 5.05467 5.09757 5.16305 5.20001 5.26968 5.29498 5.38863 5.41769 5.42285 5.45846 5.51777 5.64041 5.69084 5.85159 6.04727 6.16460 6.55067 6.62443 7.14667 7.26568 7.58264 8.14829 8.71490 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.026766 B = 0.001643 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.845633 B =17039.822792 C =17472.988669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.540 5.540 3 C 0.053 3.947 4 C 0.129 3.871 5 N -0.714 5.714 6 C 0.509 3.491 7 O -0.589 6.589 8 C -0.115 4.115 9 C -0.107 4.107 10 C -0.123 4.123 11 C -0.130 4.130 12 C -0.118 4.118 13 C -0.130 4.130 14 C -0.122 4.122 15 C -0.099 4.099 16 C 0.061 3.939 17 C 0.439 3.561 18 O -0.616 6.616 19 N -0.574 5.574 20 C -0.332 4.332 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.275 1.275 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.036 0.964 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.416 0.584 36 H 0.135 0.865 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.085 0.915 49 H 0.047 0.953 50 H 0.057 0.943 51 H 0.115 0.885 52 H 0.073 0.927 53 H 0.397 0.603 54 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.273 31.353 -4.739 32.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.265 5.265 3 C -0.074 4.074 4 C 0.004 3.996 5 N -0.367 5.367 6 C 0.297 3.703 7 O -0.470 6.470 8 C -0.135 4.135 9 C -0.145 4.145 10 C -0.160 4.160 11 C -0.167 4.167 12 C -0.156 4.156 13 C -0.168 4.168 14 C -0.159 4.159 15 C -0.137 4.137 16 C -0.070 4.070 17 C 0.227 3.773 18 O -0.503 6.503 19 N -0.212 5.212 20 C -0.462 4.462 21 H 0.095 0.905 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.200 1.200 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.117 0.883 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.253 0.747 36 H 0.152 0.848 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.103 0.897 49 H 0.066 0.934 50 H 0.076 0.924 51 H 0.133 0.867 52 H 0.091 0.909 53 H 0.231 0.769 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.646 30.468 -6.311 31.460 hybrid contribution -0.255 -0.818 1.130 1.418 sum 4.391 29.651 -5.180 30.419 Atomic orbital electron populations 1.22457 0.86944 1.02366 1.00526 1.61332 1.08865 1.13213 1.43069 1.22244 1.01839 0.87346 0.96003 1.21072 0.98581 0.81890 0.98020 1.45806 1.57558 1.13172 1.20206 1.21443 0.78696 0.88696 0.81484 1.90696 1.43234 1.77014 1.36008 1.21943 1.04090 0.89009 0.98438 1.21642 0.99429 0.97240 0.96142 1.21841 0.94629 0.96866 1.02631 1.21854 0.95307 1.01147 0.98431 1.21717 1.00483 0.99380 0.93998 1.21846 0.96096 1.00549 0.98280 1.21855 0.94913 0.97219 1.01877 1.21417 0.99924 0.97050 0.95357 1.21738 1.02361 0.89890 0.93049 1.20836 0.83726 0.88928 0.83853 1.90479 1.45188 1.81503 1.33086 1.41917 1.50066 1.06968 1.22205 1.19635 1.34356 0.84141 1.08038 0.90492 1.25998 0.96324 1.04185 0.94712 1.69665 1.38129 1.37089 1.11169 0.84954 0.78572 0.77108 0.77856 1.19741 1.19477 1.19958 0.91041 0.92538 0.94596 0.88298 0.91997 0.92686 0.92970 0.74664 0.84810 0.91995 0.90641 0.90938 0.90513 0.91126 0.91239 0.91799 0.91238 0.91808 0.91984 0.92028 0.89696 0.93369 0.92438 0.86682 0.90876 0.76930 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.81 8.96 127.69 1.14 1.95 16 2 N -0.54 -16.97 4.50 -927.05 -4.17 -21.14 16 3 C 0.05 1.13 5.07 86.30 0.44 1.56 16 4 C 0.13 3.01 5.60 86.38 0.48 3.50 16 5 N -0.71 -12.47 5.32 -463.05 -2.46 -14.94 16 6 C 0.51 11.00 7.14 87.66 0.63 11.63 16 7 O -0.59 -18.91 15.68 -3.04 -0.05 -18.95 16 8 C -0.11 -1.57 1.93 -11.53 -0.02 -1.59 16 9 C -0.11 -1.04 5.04 30.60 0.15 -0.88 16 10 C -0.12 -0.82 5.48 30.59 0.17 -0.65 16 11 C -0.13 -0.80 5.47 30.59 0.17 -0.64 16 12 C -0.12 -0.80 5.59 30.60 0.17 -0.63 16 13 C -0.13 -1.22 5.47 30.59 0.17 -1.05 16 14 C -0.12 -1.29 5.48 30.59 0.17 -1.12 16 15 C -0.10 -1.57 4.60 30.59 0.14 -1.43 16 16 C 0.06 2.00 5.45 85.55 0.47 2.47 16 17 C 0.44 20.75 7.47 87.66 0.66 21.41 16 18 O -0.62 -34.27 13.91 -3.08 -0.04 -34.32 16 19 N -0.57 -29.21 5.29 -307.00 -1.62 -30.83 16 20 C -0.33 -18.88 9.68 84.04 0.81 -18.06 16 21 H 0.08 4.69 7.16 -2.92 -0.02 4.67 16 22 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 23 N -0.92 -49.26 13.05 21.66 0.28 -48.98 16 24 Si 0.99 43.10 29.55 68.60 2.03 45.13 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 27 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 28 H 0.07 2.14 6.47 -2.39 -0.02 2.12 16 29 H 0.06 2.32 5.82 -2.39 -0.01 2.30 16 30 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.10 1.73 7.93 -2.39 -0.02 1.71 16 32 H 0.06 1.04 8.12 -2.39 -0.02 1.02 16 33 H 0.05 1.46 6.55 -2.39 -0.02 1.44 16 34 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.42 4.21 7.83 -92.71 -0.73 3.48 16 36 H 0.13 1.45 2.83 -2.39 -0.01 1.44 16 37 H 0.06 0.72 7.82 -2.38 -0.02 0.70 16 38 H 0.07 0.59 7.22 -2.38 -0.02 0.58 16 39 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 40 H 0.08 0.52 4.69 -2.39 -0.01 0.51 16 41 H 0.07 0.44 5.47 -2.39 -0.01 0.43 16 42 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.07 0.42 7.47 -2.39 -0.02 0.41 16 45 H 0.06 0.69 5.47 -2.38 -0.01 0.67 16 46 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.08 0.71 4.69 -2.39 -0.01 0.70 16 49 H 0.05 1.01 7.51 -2.39 -0.02 0.99 16 50 H 0.06 0.99 7.82 -2.39 -0.02 0.97 16 51 H 0.12 3.22 7.93 -2.39 -0.02 3.20 16 52 H 0.07 2.09 8.12 -2.39 -0.02 2.07 16 53 H 0.40 18.98 7.90 -92.71 -0.73 18.25 16 54 H 0.28 13.91 8.31 -92.70 -0.77 13.14 16 Total: -1.00 -74.37 402.70 -0.36 -74.74 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: -0.53 Total: 33.03 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 6.21 Total: 16.26 kcal Atomic # 7 Polarization: -107.92 SS G_CDS: -7.97 Total: -115.89 kcal Atomic # 8 Polarization: -53.18 SS G_CDS: -0.09 Total: -53.27 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -74.37 -0.36 -74.74 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713458938.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.374 kcal (2) G-P(sol) polarization free energy of solvation -74.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds