Wall clock time and date at job start Sat Apr 11 2020 05:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34771 * 120.00315 * 2 1 4 4 O 1.21285 * 120.00205 * 180.02562 * 3 2 1 5 5 C 1.50706 * 119.99765 * 359.97438 * 3 2 1 6 6 C 1.53005 * 109.46634 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.46574 * 180.02562 * 6 5 3 8 8 C 1.53000 * 109.47031 * 179.97438 * 7 6 5 9 9 N 1.46896 * 109.47085 * 179.97438 * 8 7 6 10 10 C 1.47014 * 111.00393 * 293.63832 * 9 8 7 11 11 C 1.53098 * 109.25790 * 177.60665 * 10 9 8 12 12 O 1.43016 * 109.25835 * 56.85025 * 11 10 9 13 13 C 1.43020 * 113.73904 * 301.32792 * 12 11 10 14 14 C 1.47015 * 110.99676 * 170.00181 * 9 8 7 15 15 C 1.46506 * 119.99756 * 179.97438 * 2 1 3 16 16 H 1.09002 * 110.64034 * 181.68614 * 15 2 1 17 17 C 1.55149 * 110.72085 * 305.02811 * 15 2 1 18 18 C 1.54913 * 101.58081 * 153.86559 * 17 15 2 19 19 N 1.47422 * 104.83234 * 322.98715 * 18 17 15 20 20 C 1.36933 * 125.64968 * 204.09452 * 19 18 17 21 21 H 1.08004 * 120.00015 * 180.02562 * 20 19 18 22 22 C 1.38819 * 119.99966 * 0.04017 * 20 19 18 23 23 N 1.31610 * 119.99844 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99596 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47221 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46722 * 120.00371 * 24 22 20 27 27 H 1.48505 * 109.46725 * 239.99788 * 24 22 20 28 28 C 1.47022 * 108.70013 * 24.13136 * 19 18 17 29 29 H 1.08994 * 109.47275 * 270.00864 * 1 2 3 30 30 H 1.08997 * 109.46397 * 30.00416 * 1 2 3 31 31 H 1.08994 * 109.47241 * 150.00451 * 1 2 3 32 32 H 1.08991 * 109.47130 * 300.00558 * 5 3 2 33 33 H 1.08998 * 109.46860 * 60.00833 * 5 3 2 34 34 H 1.08991 * 109.47491 * 299.99936 * 6 5 3 35 35 H 1.08998 * 109.47145 * 60.00606 * 6 5 3 36 36 H 1.08991 * 109.47078 * 300.00089 * 7 6 5 37 37 H 1.08998 * 109.46971 * 60.00400 * 7 6 5 38 38 H 1.08994 * 109.47192 * 300.00543 * 8 7 6 39 39 H 1.09009 * 109.46781 * 60.00038 * 8 7 6 40 40 H 1.08996 * 109.50687 * 297.54469 * 10 9 8 41 41 H 1.08997 * 109.50324 * 57.67179 * 10 9 8 42 42 H 1.09000 * 109.50547 * 296.91666 * 11 10 9 43 43 H 1.09002 * 109.50673 * 176.78564 * 11 10 9 44 44 H 1.08998 * 109.50291 * 298.73783 * 13 12 11 45 45 H 1.08993 * 109.54245 * 178.62637 * 13 12 11 46 46 H 1.08998 * 109.51091 * 302.32986 * 14 9 8 47 47 H 1.09001 * 109.50973 * 62.46398 * 14 9 8 48 48 H 1.09005 * 111.00403 * 271.93754 * 17 15 2 49 49 H 1.08993 * 111.00882 * 35.79071 * 17 15 2 50 50 H 1.09006 * 110.36719 * 204.14961 * 18 17 15 51 51 H 1.09007 * 110.45916 * 81.87684 * 18 17 15 52 52 H 0.97006 * 119.99935 * 179.97438 * 23 22 20 53 53 H 1.09005 * 109.88380 * 239.51983 * 28 19 18 54 54 H 1.09004 * 109.88423 * 118.35890 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3798 3.6351 -0.0011 7 6 1.6148 4.9602 -0.0011 8 6 2.6091 6.1231 -0.0009 9 7 1.8746 7.3953 -0.0015 10 6 1.1350 7.5762 -1.2591 11 6 0.3386 8.8821 -1.1932 12 8 1.2326 9.9670 -0.9299 13 6 1.9688 9.8238 0.2878 14 6 2.7817 8.5274 0.2369 15 6 2.1975 -1.2688 0.0006 16 1 3.2726 -1.0918 0.0305 17 6 1.7506 -2.1601 1.1893 18 6 2.0637 -3.5781 0.6496 19 7 1.7323 -3.5174 -0.7856 20 6 1.4003 -4.5866 -1.5739 21 1 1.1737 -4.4371 -2.6192 22 6 1.3546 -5.8628 -1.0294 23 7 1.6300 -6.0448 0.2446 24 14 0.9023 -7.3215 -2.1051 25 1 0.6406 -6.8531 -3.4897 26 1 2.0237 -8.2949 -2.1159 27 1 -0.3162 -7.9760 -1.5646 28 6 1.8183 -2.1187 -1.2304 29 1 -0.3633 0.0002 1.0276 30 1 -0.3632 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5137 32 1 0.7591 2.5298 -0.8907 33 1 0.7586 2.5302 0.8892 34 1 3.0065 3.5778 0.8888 35 1 3.0064 3.5770 -0.8911 36 1 0.9879 5.0178 -0.8908 37 1 0.9885 5.0181 0.8892 38 1 3.2357 6.0653 0.8890 39 1 3.2358 6.0654 -0.8910 40 1 1.8375 7.6199 -2.0914 41 1 0.4512 6.7397 -1.4027 42 1 -0.4006 8.8176 -0.3948 43 1 -0.1660 9.0491 -2.1448 44 1 1.2769 9.7867 1.1292 45 1 2.6430 10.6717 0.4081 46 1 3.2999 8.3852 1.1853 47 1 3.5105 8.5864 -0.5715 48 1 2.3372 -1.9435 2.0821 49 1 0.6850 -2.0435 1.3861 50 1 1.4429 -4.3205 1.1513 51 1 3.1194 -3.8130 0.7857 52 1 1.5977 -6.9365 0.6252 53 1 0.8541 -1.7943 -1.6221 54 1 2.5849 -2.0206 -1.9991 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714019501.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:19 Heat of formation + Delta-G solvation = -73.058130 kcal Electronic energy + Delta-G solvation = -29499.361684 eV Core-core repulsion = 25470.950049 eV Total energy + Delta-G solvation = -4028.411635 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.18675 -40.52340 -39.05360 -37.45883 -36.23845 -35.15184 -34.03853 -32.16016 -31.39148 -30.70941 -29.18899 -27.86286 -27.53299 -26.32971 -25.02154 -24.28014 -22.17333 -22.09682 -21.48955 -21.30156 -19.87763 -18.97968 -18.24743 -17.49805 -17.22373 -17.16053 -16.95500 -16.66830 -16.30045 -15.99756 -15.91470 -15.76790 -15.32521 -15.26540 -14.96959 -14.54140 -14.31718 -14.08168 -13.80319 -13.57708 -13.54230 -13.37634 -13.16882 -13.05391 -12.97845 -12.74148 -12.62875 -12.47922 -12.42434 -12.27432 -12.18908 -12.13077 -11.98947 -11.84218 -11.83678 -11.57079 -11.39653 -11.29567 -10.80521 -10.76417 -10.62878 -9.61655 -9.42058 -8.93700 -7.79596 -5.25553 1.46749 1.48067 1.58341 1.65623 1.98921 2.49167 2.73059 2.97684 3.30759 3.55632 3.72116 3.81086 3.88731 3.94491 3.96374 4.00177 4.03824 4.19292 4.21631 4.22267 4.27250 4.32664 4.41671 4.48166 4.57487 4.58625 4.60284 4.64366 4.68070 4.70982 4.76766 4.81561 4.82964 4.85023 4.89510 4.95711 4.97347 5.03233 5.04200 5.08291 5.09660 5.35237 5.43796 5.46091 5.55733 5.59613 5.75424 5.95794 5.96851 6.18790 6.26597 6.48680 7.07246 7.20638 7.73137 8.37064 9.22322 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.035748 B = 0.001540 C = 0.001513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.072681 B =18176.783921 C =18504.372143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.603 5.603 3 C 0.503 3.497 4 O -0.594 6.594 5 C -0.125 4.125 6 C -0.098 4.098 7 C -0.102 4.102 8 C 0.055 3.945 9 N -0.542 5.542 10 C 0.013 3.987 11 C 0.061 3.939 12 O -0.410 6.410 13 C 0.062 3.938 14 C 0.015 3.985 15 C 0.139 3.861 16 H 0.080 0.920 17 C -0.130 4.130 18 C 0.155 3.845 19 N -0.622 5.622 20 C -0.241 4.241 21 H 0.081 0.919 22 C -0.065 4.065 23 N -0.948 5.948 24 Si 0.983 3.017 25 H -0.267 1.267 26 H -0.294 1.294 27 H -0.287 1.287 28 C 0.130 3.870 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.027 0.973 40 H 0.031 0.969 41 H 0.103 0.897 42 H 0.064 0.936 43 H 0.111 0.889 44 H 0.063 0.937 45 H 0.111 0.889 46 H 0.096 0.904 47 H 0.033 0.967 48 H 0.075 0.925 49 H 0.081 0.919 50 H 0.082 0.918 51 H -0.017 1.017 52 H 0.248 0.752 53 H 0.044 0.956 54 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.849 31.213 1.480 31.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.335 5.335 3 C 0.294 3.706 4 O -0.475 6.475 5 C -0.164 4.164 6 C -0.137 4.137 7 C -0.140 4.140 8 C -0.073 4.073 9 N -0.268 5.268 10 C -0.115 4.115 11 C -0.016 4.016 12 O -0.329 6.329 13 C -0.014 4.014 14 C -0.113 4.113 15 C 0.034 3.966 16 H 0.098 0.902 17 C -0.170 4.170 18 C 0.030 3.970 19 N -0.348 5.348 20 C -0.369 4.369 21 H 0.099 0.901 22 C -0.257 4.257 23 N -0.598 5.598 24 Si 0.811 3.189 25 H -0.191 1.191 26 H -0.222 1.222 27 H -0.214 1.214 28 C 0.004 3.996 29 H 0.092 0.908 30 H 0.125 0.875 31 H 0.082 0.918 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.045 0.955 40 H 0.050 0.950 41 H 0.121 0.879 42 H 0.082 0.918 43 H 0.129 0.871 44 H 0.082 0.918 45 H 0.129 0.871 46 H 0.115 0.885 47 H 0.051 0.949 48 H 0.093 0.907 49 H 0.099 0.901 50 H 0.100 0.900 51 H 0.001 0.999 52 H 0.058 0.942 53 H 0.062 0.938 54 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -5.590 31.171 1.730 31.715 hybrid contribution 1.060 -1.655 -0.995 2.203 sum -4.530 29.516 0.735 29.870 Atomic orbital electron populations 1.22055 0.77235 1.04493 1.03408 1.47958 1.08409 1.04697 1.72418 1.21654 0.87828 0.86624 0.74494 1.90665 1.16467 1.88104 1.52254 1.21733 0.99185 0.88818 1.06672 1.21220 0.97341 0.93007 1.02104 1.21480 0.97676 0.91220 1.03600 1.22139 0.95666 0.88643 1.00817 1.62270 1.27909 1.02264 1.34324 1.22898 0.98354 1.00029 0.90173 1.22809 0.91396 0.84648 1.02739 1.87959 1.57525 1.45044 1.42343 1.22781 0.94950 0.97009 0.86703 1.22836 0.94739 0.91581 1.02145 1.21740 0.96485 0.83115 0.95252 0.90217 1.23133 1.01803 0.95217 0.96811 1.21725 0.96385 0.94482 0.84404 1.44709 1.80854 1.02062 1.07198 1.19482 1.38688 0.86064 0.92702 0.90089 1.25651 1.02313 1.00008 0.97763 1.70033 1.56352 1.20911 1.12462 0.84946 0.76963 0.78844 0.78152 1.19130 1.22153 1.21394 1.21615 0.98170 0.84857 0.94971 0.90789 0.87472 0.91755 0.86351 0.86155 0.92623 0.93133 0.90759 0.90096 0.90560 0.95517 0.95026 0.87907 0.91770 0.87110 0.91846 0.87089 0.88539 0.94898 0.90682 0.90082 0.90016 0.99860 0.94180 0.93772 0.97199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.37 8.87 127.77 1.13 2.51 16 2 N -0.60 -16.99 2.88 -815.97 -2.35 -19.34 16 3 C 0.50 13.88 7.67 87.66 0.67 14.55 16 4 O -0.59 -22.03 15.35 -3.04 -0.05 -22.08 16 5 C -0.12 -1.97 4.25 29.85 0.13 -1.84 16 6 C -0.10 -1.65 4.50 30.60 0.14 -1.51 16 7 C -0.10 -1.20 5.15 30.60 0.16 -1.04 16 8 C 0.05 0.75 4.96 86.30 0.43 1.17 16 9 N -0.54 -7.25 4.73 -895.21 -4.23 -11.48 16 10 C 0.01 0.16 5.44 86.31 0.47 0.63 16 11 C 0.06 0.70 7.01 72.02 0.50 1.20 16 12 O -0.41 -6.47 10.83 -148.98 -1.61 -8.09 16 13 C 0.06 0.72 7.01 72.02 0.50 1.22 16 14 C 0.02 0.19 5.64 86.32 0.49 0.67 16 15 C 0.14 5.18 3.36 46.18 0.16 5.34 16 16 H 0.08 3.35 6.99 -2.39 -0.02 3.33 16 17 C -0.13 -4.95 6.63 31.98 0.21 -4.74 16 18 C 0.16 7.80 5.89 86.86 0.51 8.31 16 19 N -0.62 -32.49 3.39 -691.95 -2.35 -34.84 16 20 C -0.24 -13.54 10.27 84.04 0.86 -12.68 16 21 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 22 C -0.06 -3.66 5.49 84.87 0.47 -3.20 16 23 N -0.95 -56.30 10.09 21.65 0.22 -56.08 16 24 Si 0.98 45.42 29.55 68.60 2.03 47.45 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 27 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 28 C 0.13 5.58 6.79 86.73 0.59 6.17 16 29 H 0.07 1.23 8.07 -2.39 -0.02 1.21 16 30 H 0.11 1.28 6.44 -2.39 -0.02 1.26 16 31 H 0.06 1.54 6.43 -2.39 -0.02 1.53 16 32 H 0.12 1.30 7.40 -2.39 -0.02 1.28 16 33 H 0.12 1.31 8.11 -2.39 -0.02 1.29 16 34 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 35 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 36 H 0.07 0.73 6.52 -2.39 -0.02 0.71 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.08 1.05 8.04 -2.39 -0.02 1.03 16 39 H 0.03 0.41 8.12 -2.38 -0.02 0.39 16 40 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.10 0.95 6.38 -2.39 -0.02 0.93 16 42 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.10 0.97 8.09 -2.39 -0.02 0.95 16 47 H 0.03 0.46 8.14 -2.39 -0.02 0.45 16 48 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 49 H 0.08 2.81 7.10 -2.39 -0.02 2.80 16 50 H 0.08 4.57 5.87 -2.38 -0.01 4.56 16 51 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16 52 H 0.25 14.25 8.31 -92.70 -0.77 13.48 16 53 H 0.04 1.76 6.29 -2.38 -0.01 1.74 16 54 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 Total: -1.00 -74.00 410.68 -0.07 -74.07 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.86 Total: 13.61 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 7.42 Total: 16.77 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -8.71 Total: -121.74 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -1.66 Total: -30.16 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -74.00 -0.07 -74.07 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714019501.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.011 kcal (2) G-P(sol) polarization free energy of solvation -73.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds