Wall clock time and date at job start Sat Apr 11 2020 05:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21281 * 119.99811 * 2 1 4 4 N 1.34771 * 120.00088 * 179.97438 * 2 1 3 5 5 C 1.46502 * 120.00201 * 179.97438 * 4 2 1 6 6 H 1.09005 * 109.47198 * 325.00361 * 5 4 2 7 7 C 1.50695 * 109.47439 * 205.00630 * 5 4 2 8 8 O 1.21284 * 120.00089 * 341.60135 * 7 5 4 9 9 N 1.34771 * 120.00370 * 161.60663 * 7 5 4 10 10 C 1.46504 * 120.00482 * 175.75934 * 9 7 5 11 11 C 1.52999 * 109.47572 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.49936 * 305.00242 * 11 10 9 13 13 C 1.53033 * 109.49809 * 184.93493 * 11 10 9 14 14 C 1.53041 * 109.53665 * 178.71782 * 13 11 10 15 15 C 1.53194 * 109.34024 * 61.32054 * 14 13 11 16 16 N 1.46922 * 108.77192 * 305.37988 * 15 14 13 17 17 C 1.36944 * 120.62937 * 233.63306 * 16 15 14 18 18 H 1.07995 * 120.00233 * 143.52178 * 17 16 15 19 19 C 1.38817 * 119.99738 * 323.51747 * 17 16 15 20 20 N 1.31618 * 119.99747 * 358.24297 * 19 17 16 21 21 Si 1.86793 * 119.99835 * 178.24478 * 19 17 16 22 22 H 1.48507 * 109.47350 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47474 * 119.99804 * 21 19 17 24 24 H 1.48503 * 109.46921 * 240.00232 * 21 19 17 25 25 C 1.46925 * 118.74134 * 53.60835 * 16 15 14 26 26 C 1.52993 * 109.47227 * 85.00199 * 5 4 2 27 27 C 1.52997 * 109.47693 * 184.09145 * 26 5 4 28 28 C 1.53007 * 109.47160 * 304.09049 * 26 5 4 29 29 C 1.53001 * 109.47181 * 64.08944 * 26 5 4 30 30 H 1.09003 * 109.46619 * 240.00057 * 1 2 3 31 31 H 1.09002 * 109.46978 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.47223 * 119.99919 * 1 2 3 33 33 H 0.96998 * 120.00206 * 0.02562 * 4 2 1 34 34 H 0.97005 * 120.00262 * 355.75626 * 9 7 5 35 35 H 1.09002 * 109.47123 * 300.00153 * 10 9 7 36 36 H 1.09000 * 109.46649 * 59.99594 * 10 9 7 37 37 H 1.08998 * 109.46264 * 298.70417 * 13 11 10 38 38 H 1.09001 * 109.46497 * 58.66528 * 13 11 10 39 39 H 1.09000 * 109.47350 * 301.36472 * 14 13 11 40 40 H 1.09004 * 109.52091 * 181.30448 * 14 13 11 41 41 H 1.08994 * 109.58592 * 185.59277 * 15 14 13 42 42 H 1.09003 * 109.70494 * 65.23602 * 15 14 13 43 43 H 0.96999 * 119.99388 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.58705 * 186.60484 * 25 16 15 45 45 H 1.08999 * 109.70487 * 66.25264 * 25 16 15 46 46 H 1.08998 * 109.46875 * 54.20682 * 27 26 5 47 47 H 1.08997 * 109.47671 * 174.21681 * 27 26 5 48 48 H 1.09011 * 109.46883 * 294.21832 * 27 26 5 49 49 H 1.09008 * 109.46795 * 60.00197 * 28 26 5 50 50 H 1.09000 * 109.47091 * 179.97438 * 28 26 5 51 51 H 1.08992 * 109.46898 * 299.99938 * 28 26 5 52 52 H 1.09002 * 109.47002 * 60.00157 * 29 26 5 53 53 H 1.09000 * 109.47722 * 180.02562 * 29 26 5 54 54 H 1.09005 * 109.47052 * 300.00511 * 29 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6460 -1.1672 0.0000 6 1 4.0091 -0.3257 -0.5902 7 6 4.1481 -2.4551 -0.5999 8 8 3.4106 -3.4146 -0.6807 9 7 5.4167 -2.5410 -1.0466 10 6 5.9334 -3.8185 -1.5441 11 6 7.3873 -3.6429 -1.9871 12 1 7.4504 -2.8353 -2.7164 13 6 7.8890 -4.9429 -2.6198 14 6 9.3329 -4.7582 -3.0922 15 6 10.2224 -4.4308 -1.8888 16 7 9.6625 -3.2659 -1.1900 17 6 10.4380 -2.1665 -0.9344 18 1 10.0075 -1.1776 -0.9888 19 6 11.7774 -2.3233 -0.6052 20 7 12.2935 -3.5299 -0.5049 21 14 12.8472 -0.8218 -0.3046 22 1 12.0338 0.4085 -0.4788 23 1 13.3868 -0.8672 1.0781 24 1 13.9714 -0.8128 -1.2748 25 6 8.2547 -3.3028 -0.7711 26 6 4.1565 -1.0406 1.4366 27 6 5.6830 -0.9379 1.4283 28 6 3.5645 0.2154 2.0795 29 6 3.7325 -2.2724 2.2390 30 1 -0.3633 -0.5139 0.8900 31 1 -0.3633 1.0277 0.0005 32 1 -0.3633 -0.5138 -0.8900 33 1 1.6960 -2.0072 0.0005 34 1 5.9878 -1.7569 -1.0389 35 1 5.8824 -4.5646 -0.7511 36 1 5.3328 -4.1478 -2.3919 37 1 7.8483 -5.7448 -1.8828 38 1 7.2581 -5.1998 -3.4708 39 1 9.3781 -3.9403 -3.8114 40 1 9.6822 -5.6769 -3.5637 41 1 11.2312 -4.2010 -2.2318 42 1 10.2524 -5.2839 -1.2110 43 1 13.2294 -3.6394 -0.2746 44 1 7.9652 -2.3288 -0.3767 45 1 8.1200 -4.0632 -0.0019 46 1 5.9887 -0.1221 0.7733 47 1 6.0398 -0.7450 2.4400 48 1 6.1081 -1.8739 1.0655 49 1 2.4769 0.1422 2.0855 50 1 3.9279 0.3053 3.1032 51 1 3.8665 1.0929 1.5079 52 1 4.1543 -3.1671 1.7810 53 1 4.0959 -2.1820 3.2627 54 1 2.6450 -2.3455 2.2449 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714049711.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:28 Heat of formation + Delta-G solvation = -94.864383 kcal Electronic energy + Delta-G solvation = -31761.856402 eV Core-core repulsion = 27732.499177 eV Total energy + Delta-G solvation = -4029.357225 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.97196 -40.29169 -39.31613 -37.77309 -36.33773 -34.84446 -34.50703 -32.27671 -32.03415 -30.93877 -28.72224 -28.25262 -27.65960 -27.22078 -26.15606 -23.81685 -22.60325 -21.85024 -21.66791 -20.69700 -19.99730 -18.82762 -18.50298 -17.72786 -17.23238 -17.06954 -16.81128 -16.34717 -16.22928 -15.74401 -15.48491 -15.15913 -15.06500 -14.86278 -14.60653 -14.50384 -14.44057 -14.00495 -13.83029 -13.72821 -13.46121 -13.31185 -13.22056 -13.03874 -13.02426 -12.81913 -12.79457 -12.60135 -12.54274 -12.31121 -12.25639 -11.93596 -11.92110 -11.81239 -11.76263 -11.54719 -11.30291 -11.09615 -10.91733 -10.88693 -10.53605 -10.11135 -10.04763 -8.52245 -7.85438 -5.42463 1.44516 1.45975 1.48176 1.57587 1.66072 1.85435 2.49143 2.50089 3.31396 3.49825 3.62190 3.64238 3.80770 3.93636 4.00866 4.02637 4.04944 4.09567 4.30930 4.42510 4.44460 4.56393 4.59012 4.62853 4.68234 4.70139 4.74325 4.78364 4.84904 4.90351 4.93175 4.96812 4.98247 5.03168 5.07950 5.09515 5.12972 5.23190 5.24155 5.30750 5.35309 5.38301 5.40723 5.42918 5.47790 5.61367 5.69051 5.83855 6.41205 6.46976 6.54391 7.06898 7.19717 7.25129 7.87261 8.42438 9.19529 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013836 B = 0.002994 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.199318 B = 9349.275660 C =10615.163488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.508 3.492 3 O -0.580 6.580 4 N -0.707 5.707 5 C 0.139 3.861 6 H 0.102 0.898 7 C 0.520 3.480 8 O -0.564 6.564 9 N -0.714 5.714 10 C 0.138 3.862 11 C -0.103 4.103 12 H 0.073 0.927 13 C -0.096 4.096 14 C -0.132 4.132 15 C 0.174 3.826 16 N -0.610 5.610 17 C -0.261 4.261 18 H 0.067 0.933 19 C -0.045 4.045 20 N -0.935 5.935 21 Si 0.964 3.036 22 H -0.264 1.264 23 H -0.293 1.293 24 H -0.292 1.292 25 C 0.155 3.845 26 C -0.064 4.064 27 C -0.155 4.155 28 C -0.122 4.122 29 C -0.137 4.137 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.416 0.584 34 H 0.410 0.590 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.050 0.950 40 H 0.067 0.933 41 H 0.050 0.950 42 H -0.008 1.008 43 H 0.249 0.751 44 H 0.056 0.944 45 H 0.007 0.993 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.058 0.942 49 H 0.051 0.949 50 H 0.059 0.941 51 H 0.052 0.948 52 H 0.042 0.958 53 H 0.065 0.935 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.842 2.753 0.817 23.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.297 3.703 3 O -0.460 6.460 4 N -0.361 5.361 5 C 0.029 3.971 6 H 0.120 0.880 7 C 0.306 3.694 8 O -0.443 6.443 9 N -0.365 5.365 10 C 0.014 3.986 11 C -0.124 4.124 12 H 0.091 0.909 13 C -0.134 4.134 14 C -0.171 4.171 15 C 0.049 3.951 16 N -0.333 5.333 17 C -0.391 4.391 18 H 0.084 0.916 19 C -0.241 4.241 20 N -0.580 5.580 21 Si 0.792 3.208 22 H -0.188 1.188 23 H -0.220 1.220 24 H -0.219 1.219 25 C 0.030 3.970 26 C -0.066 4.066 27 C -0.213 4.213 28 C -0.179 4.179 29 C -0.194 4.194 30 H 0.128 0.872 31 H 0.112 0.888 32 H 0.125 0.875 33 H 0.254 0.746 34 H 0.246 0.754 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.010 0.990 43 H 0.058 0.942 44 H 0.075 0.925 45 H 0.025 0.975 46 H 0.083 0.917 47 H 0.087 0.913 48 H 0.077 0.923 49 H 0.070 0.930 50 H 0.078 0.922 51 H 0.071 0.929 52 H 0.062 0.938 53 H 0.084 0.916 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.777 2.765 0.798 22.958 hybrid contribution 1.419 0.409 0.294 1.506 sum -21.357 3.174 1.092 21.619 Atomic orbital electron populations 1.21938 0.88147 1.06210 1.06282 1.21482 0.92137 0.82507 0.74145 1.90728 1.71669 1.32585 1.51030 1.45808 1.05099 1.10104 1.75104 1.20818 0.82993 0.95669 0.97573 0.88016 1.20578 0.81972 0.89728 0.77115 1.90659 1.56331 1.39687 1.57611 1.46128 1.12986 1.13909 1.63510 1.21309 0.93165 0.84976 0.99104 1.21746 0.92650 0.99252 0.98722 0.90854 1.21319 0.95742 0.96079 1.00236 1.22023 0.96233 1.00521 0.98301 1.20620 0.96155 0.87657 0.90680 1.44191 1.07551 1.15915 1.65620 1.19486 0.92455 0.87049 1.40156 0.91581 1.26048 1.00098 0.98632 0.99273 1.70121 1.12987 1.21941 1.52989 0.85254 0.78665 0.79987 0.76866 1.18767 1.21956 1.21944 1.21020 0.84099 0.98462 0.93467 1.20799 0.96133 0.97223 0.92443 1.22081 0.93365 1.02404 1.03472 1.21806 1.00237 0.95809 1.00066 1.21844 1.01726 0.95774 1.00102 0.87225 0.88823 0.87525 0.74640 0.75369 0.91951 0.90738 0.92551 0.90275 0.93093 0.91458 0.93130 0.98965 0.94181 0.92517 0.97496 0.91727 0.91257 0.92333 0.93038 0.92154 0.92853 0.93849 0.91590 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 10.32 71.24 0.74 -0.82 16 2 C 0.51 9.30 6.16 87.66 0.54 9.84 16 3 O -0.58 -15.20 14.21 -3.03 -0.04 -15.24 16 4 N -0.71 -12.66 4.27 -446.11 -1.90 -14.57 16 5 C 0.14 2.91 1.94 44.24 0.09 3.00 16 6 H 0.10 2.30 7.58 -2.38 -0.02 2.28 16 7 C 0.52 12.37 5.35 87.66 0.47 12.84 16 8 O -0.56 -15.73 15.70 -3.04 -0.05 -15.78 16 9 N -0.71 -16.68 4.05 -463.06 -1.88 -18.56 16 10 C 0.14 3.48 5.07 86.38 0.44 3.92 16 11 C -0.10 -3.06 2.37 -10.72 -0.03 -3.08 16 12 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 13 C -0.10 -2.82 5.17 30.62 0.16 -2.66 16 14 C -0.13 -4.70 6.08 30.67 0.19 -4.52 16 15 C 0.17 8.26 5.22 86.36 0.45 8.71 16 16 N -0.61 -29.36 2.98 -699.10 -2.08 -31.44 16 17 C -0.26 -13.85 9.54 84.03 0.80 -13.05 16 18 H 0.07 3.38 7.83 -2.91 -0.02 3.36 16 19 C -0.04 -2.45 5.21 84.86 0.44 -2.01 16 20 N -0.93 -54.64 10.96 21.65 0.24 -54.40 16 21 Si 0.96 44.06 29.55 68.60 2.03 46.09 16 22 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 24 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 25 C 0.16 5.90 5.60 86.36 0.48 6.38 16 26 C -0.06 -1.30 0.62 -52.18 -0.03 -1.33 16 27 C -0.16 -3.33 7.43 71.98 0.53 -2.79 16 28 C -0.12 -2.49 6.96 71.98 0.50 -1.99 16 29 C -0.14 -2.70 8.04 71.98 0.58 -2.12 16 30 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.09 0.91 8.12 -2.39 -0.02 0.89 16 32 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.42 6.58 7.73 -92.71 -0.72 5.87 16 34 H 0.41 9.09 6.65 -92.70 -0.62 8.47 16 35 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 41 H 0.05 2.75 6.22 -2.39 -0.01 2.74 16 42 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 43 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 44 H 0.06 2.05 7.12 -2.39 -0.02 2.03 16 45 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 46 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.06 1.37 6.33 -2.38 -0.02 1.36 16 49 H 0.05 1.04 5.89 -2.38 -0.01 1.03 16 50 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 51 H 0.05 1.27 7.25 -2.39 -0.02 1.25 16 52 H 0.04 0.99 6.96 -2.39 -0.02 0.98 16 53 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 54 H 0.06 1.14 7.72 -2.38 -0.02 1.12 16 Total: -1.00 -68.00 409.97 2.21 -65.79 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: -0.45 Total: 27.79 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 6.35 Total: 10.32 kcal Atomic # 7 Polarization: -113.34 SS G_CDS: -5.62 Total: -118.97 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -0.09 Total: -31.02 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -68.00 2.21 -65.79 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714049711.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.074 kcal (2) G-P(sol) polarization free energy of solvation -68.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds