Wall clock time and date at job start Sat Apr 11 2020 05:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21286 * 120.00285 * 2 1 4 4 N 1.34777 * 120.00078 * 179.97438 * 2 1 3 5 5 C 1.46500 * 119.99883 * 180.02562 * 4 2 1 6 6 H 1.08993 * 109.47605 * 324.99607 * 5 4 2 7 7 C 1.50706 * 109.46927 * 204.99597 * 5 4 2 8 8 O 1.21276 * 120.00069 * 329.51131 * 7 5 4 9 9 N 1.34777 * 119.99577 * 149.50605 * 7 5 4 10 10 C 1.46502 * 119.99697 * 185.35694 * 9 7 5 11 11 C 1.53001 * 109.47000 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.50174 * 54.92808 * 11 10 9 13 13 C 1.53039 * 109.49838 * 175.00093 * 11 10 9 14 14 C 1.53041 * 109.53733 * 181.31297 * 13 11 10 15 15 C 1.53184 * 109.31424 * 298.63110 * 14 13 11 16 16 N 1.46925 * 108.77386 * 54.63607 * 15 14 13 17 17 C 1.36941 * 120.63022 * 126.37123 * 16 15 14 18 18 H 1.07999 * 119.99865 * 326.08432 * 17 16 15 19 19 C 1.38810 * 120.00002 * 146.08190 * 17 16 15 20 20 N 1.31618 * 120.00219 * 343.43225 * 19 17 16 21 21 Si 1.86805 * 119.99793 * 163.42833 * 19 17 16 22 22 H 1.48506 * 109.47056 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46965 * 119.99948 * 21 19 17 24 24 H 1.48495 * 109.47347 * 240.00152 * 21 19 17 25 25 C 1.46925 * 118.73814 * 306.64237 * 16 15 14 26 26 C 1.53005 * 109.46854 * 85.00342 * 5 4 2 27 27 C 1.53007 * 109.46772 * 174.14592 * 26 5 4 28 28 C 1.53002 * 109.46874 * 294.14012 * 26 5 4 29 29 C 1.52996 * 109.47389 * 54.14491 * 26 5 4 30 30 H 1.09001 * 109.47391 * 270.00402 * 1 2 3 31 31 H 1.09000 * 109.47377 * 30.00046 * 1 2 3 32 32 H 1.09000 * 109.47148 * 149.99974 * 1 2 3 33 33 H 0.96996 * 119.99808 * 0.02562 * 4 2 1 34 34 H 0.96998 * 120.00385 * 5.35005 * 9 7 5 35 35 H 1.08994 * 109.47509 * 59.99854 * 10 9 7 36 36 H 1.08997 * 109.46856 * 299.99701 * 10 9 7 37 37 H 1.08999 * 109.46340 * 61.29213 * 13 11 10 38 38 H 1.09003 * 109.44618 * 301.32744 * 13 11 10 39 39 H 1.09003 * 109.49353 * 178.67802 * 14 13 11 40 40 H 1.08997 * 109.52061 * 58.60390 * 14 13 11 41 41 H 1.08995 * 109.58697 * 294.84834 * 15 14 13 42 42 H 1.08999 * 109.70532 * 174.49211 * 15 14 13 43 43 H 0.96997 * 119.99649 * 179.97438 * 20 19 17 44 44 H 1.09008 * 109.58472 * 173.14805 * 25 16 15 45 45 H 1.09001 * 109.58580 * 293.56624 * 25 16 15 46 46 H 1.08994 * 109.47013 * 57.20762 * 27 26 5 47 47 H 1.08999 * 109.47219 * 177.20785 * 27 26 5 48 48 H 1.09006 * 109.46999 * 297.20616 * 27 26 5 49 49 H 1.09001 * 109.47009 * 60.00561 * 28 26 5 50 50 H 1.09000 * 109.46720 * 180.02562 * 28 26 5 51 51 H 1.08993 * 109.47199 * 300.00266 * 28 26 5 52 52 H 1.09004 * 109.47079 * 59.99837 * 29 26 5 53 53 H 1.09000 * 109.47127 * 179.97438 * 29 26 5 54 54 H 1.09001 * 109.47112 * 299.99818 * 29 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0011 6 1 4.0095 -0.3256 -0.5884 7 6 4.1484 -2.4551 -0.5988 8 8 3.4972 -3.4718 -0.4849 9 7 5.3216 -2.4768 -1.2620 10 6 5.7542 -3.6984 -1.9452 11 6 7.1090 -3.4564 -2.6137 12 1 7.8218 -3.0969 -1.8717 13 6 7.6199 -4.7648 -3.2211 14 6 8.9901 -4.5311 -3.8616 15 6 8.8550 -3.4975 -4.9840 16 7 8.2296 -2.2854 -4.4378 17 6 8.8257 -1.0623 -4.5926 18 1 9.9028 -0.9827 -4.5924 19 6 8.0457 0.0751 -4.7497 20 7 6.7754 -0.0378 -5.0752 21 14 8.7989 1.7661 -4.4989 22 1 10.2330 1.6212 -4.1416 23 1 8.6787 2.5524 -5.7530 24 1 8.0840 2.4690 -3.4035 25 6 6.9554 -2.4113 -3.7172 26 6 4.1552 -1.0412 1.4383 27 6 5.6782 -1.1875 1.4543 28 6 3.7687 0.3293 1.9981 29 6 3.5284 -2.1392 2.2998 30 1 -0.3634 0.0001 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 1.6959 -2.0072 0.0005 34 1 5.8794 -1.6837 -1.2870 35 1 5.0188 -3.9714 -2.7020 36 1 5.8466 -4.5069 -1.2201 37 1 6.9186 -5.1111 -3.9803 38 1 7.7087 -5.5181 -2.4382 39 1 9.3638 -5.4686 -4.2733 40 1 9.6859 -4.1616 -3.1084 41 1 8.2318 -3.9029 -5.7810 42 1 9.8410 -3.2534 -5.3795 43 1 6.2303 0.7571 -5.1846 44 1 6.6893 -1.4511 -3.2749 45 1 6.1740 -2.7262 -4.4089 46 1 6.1222 -0.4361 0.8013 47 1 6.0460 -1.0484 2.4709 48 1 5.9514 -2.1822 1.1019 49 1 2.6838 0.4336 1.9867 50 1 4.1320 0.4192 3.0218 51 1 4.2153 1.1115 1.3844 52 1 3.8038 -3.1156 1.9009 53 1 3.8916 -2.0497 3.3235 54 1 2.4434 -2.0350 2.2884 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714049714.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:32 Heat of formation + Delta-G solvation = -96.891020 kcal Electronic energy + Delta-G solvation = -32036.967078 eV Core-core repulsion = 28007.521971 eV Total energy + Delta-G solvation = -4029.445106 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.96737 -40.30840 -39.36114 -37.77402 -36.22911 -34.88989 -34.67769 -32.62099 -31.65838 -30.98181 -28.75138 -28.20658 -27.74473 -27.22517 -26.20701 -23.91194 -22.52193 -21.92165 -21.67165 -20.68862 -19.97698 -18.82283 -18.59211 -17.77576 -17.29559 -17.08705 -16.86272 -16.31116 -16.14911 -15.81827 -15.45486 -15.18664 -15.09086 -14.88328 -14.70687 -14.52504 -14.36650 -14.07069 -13.88795 -13.77087 -13.51257 -13.35562 -13.23236 -13.06409 -12.93414 -12.91413 -12.83372 -12.62360 -12.60363 -12.28653 -12.23393 -12.00977 -11.94054 -11.80202 -11.75821 -11.55442 -11.31690 -11.08165 -10.96794 -10.88643 -10.58809 -10.17140 -10.01861 -8.60287 -7.89363 -5.40586 1.35772 1.42935 1.46844 1.55996 1.64508 1.90020 2.46020 2.48705 3.24346 3.47307 3.61177 3.62081 3.80448 3.90912 3.99390 4.04084 4.07632 4.14589 4.28671 4.36169 4.44076 4.50630 4.53882 4.63800 4.65716 4.69591 4.74749 4.80412 4.84074 4.87921 4.88833 4.95467 4.96290 5.02835 5.04931 5.07532 5.16358 5.18600 5.23691 5.29770 5.33714 5.36130 5.38679 5.43298 5.46374 5.51006 5.66661 5.74627 6.39530 6.40208 6.50014 7.03441 7.15274 7.21374 7.84647 8.39964 9.15136 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010397 B = 0.003757 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.455067 B = 7450.170067 C = 8791.759203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.504 3.496 3 O -0.581 6.581 4 N -0.706 5.706 5 C 0.136 3.864 6 H 0.085 0.915 7 C 0.521 3.479 8 O -0.560 6.560 9 N -0.715 5.715 10 C 0.139 3.861 11 C -0.111 4.111 12 H 0.072 0.928 13 C -0.097 4.097 14 C -0.121 4.121 15 C 0.135 3.865 16 N -0.609 5.609 17 C -0.266 4.266 18 H 0.061 0.939 19 C -0.037 4.037 20 N -0.928 5.928 21 Si 0.956 3.044 22 H -0.264 1.264 23 H -0.294 1.294 24 H -0.289 1.289 25 C 0.194 3.806 26 C -0.066 4.066 27 C -0.151 4.151 28 C -0.123 4.123 29 C -0.133 4.133 30 H 0.116 0.884 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.416 0.584 34 H 0.406 0.594 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.057 0.943 41 H 0.008 0.992 42 H 0.049 0.951 43 H 0.248 0.752 44 H 0.047 0.953 45 H -0.013 1.013 46 H 0.054 0.946 47 H 0.080 0.920 48 H 0.057 0.943 49 H 0.052 0.948 50 H 0.067 0.933 51 H 0.041 0.959 52 H 0.050 0.950 53 H 0.070 0.930 54 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.463 -7.005 15.235 18.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.294 3.706 3 O -0.461 6.461 4 N -0.360 5.360 5 C 0.027 3.973 6 H 0.103 0.897 7 C 0.307 3.693 8 O -0.439 6.439 9 N -0.365 5.365 10 C 0.015 3.985 11 C -0.132 4.132 12 H 0.091 0.909 13 C -0.135 4.135 14 C -0.160 4.160 15 C 0.010 3.990 16 N -0.333 5.333 17 C -0.396 4.396 18 H 0.079 0.921 19 C -0.233 4.233 20 N -0.573 5.573 21 Si 0.784 3.216 22 H -0.189 1.189 23 H -0.222 1.222 24 H -0.216 1.216 25 C 0.068 3.932 26 C -0.068 4.068 27 C -0.208 4.208 28 C -0.180 4.180 29 C -0.190 4.190 30 H 0.134 0.866 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.254 0.746 34 H 0.241 0.759 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.026 0.974 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.005 0.995 46 H 0.073 0.927 47 H 0.099 0.901 48 H 0.076 0.924 49 H 0.071 0.929 50 H 0.086 0.914 51 H 0.060 0.940 52 H 0.069 0.931 53 H 0.089 0.911 54 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.599 -6.882 15.218 18.786 hybrid contribution 0.323 1.297 -0.697 1.507 sum -8.276 -5.585 14.522 17.623 Atomic orbital electron populations 1.21903 0.87829 1.06065 1.06468 1.21598 0.92305 0.82529 0.74197 1.90742 1.71709 1.32686 1.50986 1.45842 1.05033 1.10066 1.75029 1.20858 0.83058 0.95297 0.98111 0.89739 1.20534 0.81007 0.90210 0.77533 1.90636 1.57571 1.35315 1.60406 1.46149 1.21464 1.16521 1.52383 1.21327 0.95257 0.86468 0.95453 1.21825 0.95299 0.98015 0.98015 0.90939 1.21348 0.96705 0.95528 0.99965 1.21864 0.97060 0.98818 0.98282 1.21123 0.96059 0.87529 0.94263 1.44240 1.23990 1.02831 1.62216 1.19426 0.91100 0.84951 1.44144 0.92111 1.25824 0.96657 1.01454 0.99410 1.70186 1.07778 1.28510 1.50808 0.85394 0.78631 0.80622 0.76951 1.18860 1.22159 1.21583 1.20378 0.86194 0.96026 0.90555 1.20838 0.96402 0.97622 0.91928 1.22014 0.93347 1.01892 1.03587 1.21799 1.01427 0.94349 1.00458 1.21795 1.00940 0.96857 0.99445 0.86596 0.88739 0.88038 0.74608 0.75875 0.92908 0.90094 0.92711 0.89878 0.89902 0.92393 0.97429 0.93192 0.94255 0.93484 0.99461 0.92710 0.90117 0.92432 0.92911 0.91407 0.93997 0.93135 0.91091 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 10.30 71.23 0.73 -1.50 16 2 C 0.50 11.97 6.55 87.66 0.57 12.54 16 3 O -0.58 -18.82 14.24 -3.05 -0.04 -18.87 16 4 N -0.71 -16.30 4.00 -446.09 -1.79 -18.09 16 5 C 0.14 3.64 1.94 44.25 0.09 3.72 16 6 H 0.08 2.69 7.58 -2.39 -0.02 2.67 16 7 C 0.52 15.22 5.28 87.66 0.46 15.68 16 8 O -0.56 -17.81 15.19 -3.02 -0.05 -17.86 16 9 N -0.71 -21.46 4.43 -463.06 -2.05 -23.51 16 10 C 0.14 4.17 5.08 86.38 0.44 4.60 16 11 C -0.11 -3.70 2.36 -10.86 -0.03 -3.72 16 12 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 13 C -0.10 -2.81 5.17 30.62 0.16 -2.66 16 14 C -0.12 -3.72 6.08 30.67 0.19 -3.53 16 15 C 0.14 5.50 6.52 86.36 0.56 6.06 16 16 N -0.61 -29.76 2.96 -699.94 -2.07 -31.83 16 17 C -0.27 -14.36 9.51 84.03 0.80 -13.56 16 18 H 0.06 3.24 7.88 -2.91 -0.02 3.22 16 19 C -0.04 -2.02 4.88 84.86 0.41 -1.61 16 20 N -0.93 -54.44 11.65 21.65 0.25 -54.19 16 21 Si 0.96 44.46 29.58 68.60 2.03 46.48 16 22 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 23 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 24 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 25 C 0.19 8.78 4.34 86.22 0.37 9.16 16 26 C -0.07 -1.50 0.62 -52.18 -0.03 -1.53 16 27 C -0.15 -3.27 7.61 71.98 0.55 -2.73 16 28 C -0.12 -2.88 7.09 71.98 0.51 -2.37 16 29 C -0.13 -2.63 8.01 71.98 0.58 -2.05 16 30 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.42 8.37 7.86 -92.71 -0.73 7.65 16 34 H 0.41 12.59 7.40 -92.71 -0.69 11.90 16 35 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 41 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 43 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 44 H 0.05 2.36 5.72 -2.38 -0.01 2.34 16 45 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 46 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 47 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.06 1.30 6.68 -2.38 -0.02 1.28 16 49 H 0.05 1.29 5.63 -2.39 -0.01 1.27 16 50 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 51 H 0.04 1.15 7.90 -2.39 -0.02 1.13 16 52 H 0.05 1.14 6.79 -2.39 -0.02 1.12 16 53 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 54 H 0.06 1.14 7.45 -2.39 -0.02 1.12 16 Total: -1.00 -69.40 412.11 2.12 -67.29 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: -0.53 Total: 34.06 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: 6.37 Total: 16.51 kcal Atomic # 7 Polarization: -121.96 SS G_CDS: -5.66 Total: -127.62 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -0.09 Total: -36.73 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -69.40 2.12 -67.29 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714049714.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.602 kcal (2) G-P(sol) polarization free energy of solvation -69.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds