Wall clock time and date at job start Sat Apr 11 2020 05:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21286 * 120.00054 * 2 1 4 4 N 1.34780 * 120.00426 * 179.97438 * 2 1 3 5 5 C 1.46497 * 120.00357 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.46698 * 180.02562 * 5 4 2 7 7 C 1.53010 * 109.46777 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.46777 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.46652 * 180.02562 * 8 7 6 10 10 C 1.50705 * 109.47377 * 180.02562 * 9 8 7 11 11 O 1.21287 * 119.99246 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00359 * 179.97438 * 10 9 8 13 13 C 1.46503 * 120.00197 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47215 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.58460 * 60.41559 * 14 13 12 16 16 C 1.53193 * 109.58685 * 180.84067 * 14 13 12 17 17 C 1.53039 * 109.31618 * 174.42319 * 16 14 13 18 18 C 1.53038 * 109.53604 * 298.63790 * 17 16 14 19 19 C 1.52763 * 109.38623 * 61.23579 * 18 17 16 20 20 N 1.46921 * 109.00939 * 305.58939 * 19 18 17 21 21 C 1.36935 * 120.63002 * 233.58304 * 20 19 18 22 22 H 1.08006 * 120.00079 * 146.42253 * 21 20 19 23 23 C 1.38808 * 120.00155 * 326.42065 * 21 20 19 24 24 N 1.31620 * 119.99951 * 338.38391 * 23 21 20 25 25 Si 1.86809 * 119.99988 * 158.37721 * 23 21 20 26 26 H 1.48496 * 109.46808 * 180.02562 * 25 23 21 27 27 H 1.48497 * 109.47171 * 300.00212 * 25 23 21 28 28 H 1.48504 * 109.46836 * 60.00418 * 25 23 21 29 29 H 1.08999 * 109.47089 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46818 * 300.00468 * 1 2 3 31 31 H 1.09001 * 109.46944 * 60.00598 * 1 2 3 32 32 H 0.97002 * 119.99239 * 0.02562 * 4 2 1 33 33 H 1.08996 * 109.47044 * 59.99853 * 5 4 2 34 34 H 1.08996 * 109.46978 * 299.99728 * 5 4 2 35 35 H 1.08998 * 109.47536 * 60.00654 * 6 5 4 36 36 H 1.08996 * 109.47160 * 299.99587 * 6 5 4 37 37 H 1.08996 * 109.46908 * 59.99858 * 7 6 5 38 38 H 1.08997 * 109.47139 * 300.00323 * 7 6 5 39 39 H 1.09001 * 109.47060 * 60.00181 * 8 7 6 40 40 H 1.08996 * 109.47160 * 299.99705 * 8 7 6 41 41 H 1.09001 * 109.47262 * 60.00277 * 9 8 7 42 42 H 1.09006 * 109.47426 * 300.00148 * 9 8 7 43 43 H 0.97001 * 120.00031 * 0.02562 * 12 10 9 44 44 H 1.09001 * 109.46602 * 60.00244 * 13 12 10 45 45 H 1.09006 * 109.47222 * 300.00644 * 13 12 10 46 46 H 1.09005 * 109.49548 * 294.37980 * 16 14 13 47 47 H 1.09002 * 109.49763 * 54.43484 * 16 14 13 48 48 H 1.08998 * 109.45517 * 58.65174 * 17 16 14 49 49 H 1.08996 * 109.45858 * 178.62748 * 17 16 14 50 50 H 1.09003 * 109.49630 * 181.31588 * 18 17 16 51 51 H 1.09002 * 109.49374 * 301.40882 * 18 17 16 52 52 H 1.09003 * 109.50882 * 185.70613 * 19 18 17 53 53 H 1.08998 * 109.43007 * 65.42944 * 19 18 17 54 54 H 0.96995 * 119.99759 * 354.45424 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 3.6460 -1.1672 0.0011 6 6 4.1559 -2.6097 0.0010 7 6 5.6860 -2.6097 0.0009 8 6 6.1959 -4.0522 0.0014 9 6 7.7259 -4.0522 0.0020 10 6 8.2283 -5.4730 0.0019 11 8 7.4401 -6.3949 0.0009 12 7 9.5533 -5.7193 0.0018 13 6 10.0417 -7.1005 0.0023 14 6 11.5717 -7.1005 0.0028 15 1 11.9368 -6.5933 0.8958 16 6 12.0853 -8.5436 -0.0180 17 6 13.6092 -8.5366 -0.1578 18 6 13.9990 -7.8662 -1.4771 19 6 13.5065 -6.4201 -1.4760 20 7 12.0646 -6.4059 -1.1944 21 6 11.1960 -5.7624 -2.0350 22 1 10.1996 -6.1519 -2.1833 23 6 11.5960 -4.6094 -2.6963 24 7 12.5995 -3.8973 -2.2292 25 14 10.7101 -4.0685 -4.2495 26 1 11.3250 -2.8167 -4.7596 27 1 10.8245 -5.1313 -5.2803 28 1 9.2770 -3.8277 -3.9436 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.6959 -2.0072 0.0005 33 1 4.0089 -0.6531 0.8911 34 1 4.0096 -0.6536 -0.8889 35 1 3.7930 -3.1233 -0.8893 36 1 3.7922 -3.1237 0.8907 37 1 6.0493 -2.0959 0.8909 38 1 6.0493 -2.0958 -0.8890 39 1 5.8325 -4.5664 -0.8884 40 1 5.8326 -4.5657 0.8916 41 1 8.0889 -3.5382 0.8921 42 1 8.0896 -3.5385 -0.8879 43 1 10.1836 -4.9820 0.0022 44 1 9.6783 -7.6146 -0.8875 45 1 9.6784 -7.6141 0.8925 46 1 11.8073 -9.0420 0.9108 47 1 11.6444 -9.0746 -0.8617 48 1 14.0475 -7.9844 0.6735 49 1 13.9794 -9.5617 -0.1482 50 1 15.0834 -7.8824 -1.5869 51 1 13.5407 -8.4034 -2.3074 52 1 13.6928 -5.9714 -2.4517 53 1 14.0348 -5.8578 -0.7060 54 1 13.0073 -4.1320 -1.3810 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714118009.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:41 Heat of formation + Delta-G solvation = -112.199153 kcal Electronic energy + Delta-G solvation = -29719.335299 eV Core-core repulsion = 25689.226383 eV Total energy + Delta-G solvation = -4030.108917 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.82555 -40.58744 -39.49327 -37.34119 -35.77000 -35.28833 -35.12934 -32.78920 -32.11246 -31.52969 -30.40794 -28.03602 -27.08344 -25.99919 -23.79097 -23.37944 -22.42131 -22.18587 -21.33216 -21.12694 -20.67411 -19.07934 -17.79415 -17.62415 -17.34422 -17.03453 -16.99317 -16.75910 -16.40869 -15.96335 -15.64910 -15.48652 -15.08366 -15.00630 -14.75248 -14.59462 -14.57108 -13.97991 -13.95345 -13.76197 -13.44603 -13.33954 -13.20649 -13.06204 -12.92751 -12.84945 -12.76036 -12.54788 -12.15681 -12.01685 -11.98030 -11.96590 -11.95622 -11.72618 -11.64274 -11.43967 -11.29371 -11.04364 -10.98167 -10.66369 -10.44000 -10.13157 -9.81252 -8.79526 -8.07375 -5.35133 1.56872 1.61331 1.62878 1.78500 1.80065 2.28697 2.48992 2.64123 3.29051 3.48583 3.76841 3.91117 3.92674 3.95426 3.98044 4.08308 4.13262 4.18621 4.23276 4.31596 4.44275 4.47766 4.51867 4.53922 4.59115 4.63131 4.67899 4.69247 4.73543 4.79876 4.88723 4.90430 4.95417 5.01250 5.04289 5.08372 5.08518 5.15036 5.21069 5.27992 5.29966 5.34445 5.39252 5.43996 5.48845 5.58893 5.68441 6.02964 6.50686 6.57947 6.76770 7.13066 7.26191 7.39884 7.83934 8.31837 9.12395 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016457 B = 0.002019 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.996021 B =13864.718501 C =15059.022712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.498 3.502 3 O -0.608 6.608 4 N -0.720 5.720 5 C 0.117 3.883 6 C -0.118 4.118 7 C -0.114 4.114 8 C -0.091 4.091 9 C -0.138 4.138 10 C 0.502 3.498 11 O -0.598 6.598 12 N -0.696 5.696 13 C 0.143 3.857 14 C 0.160 3.840 15 H 0.032 0.968 16 C -0.122 4.122 17 C -0.102 4.102 18 C -0.131 4.131 19 C 0.158 3.842 20 N -0.608 5.608 21 C -0.324 4.324 22 H 0.045 0.955 23 C -0.059 4.059 24 N -0.941 5.941 25 Si 1.092 2.908 26 H -0.294 1.294 27 H -0.293 1.293 28 H -0.277 1.277 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.418 0.582 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.110 0.890 42 H 0.090 0.910 43 H 0.409 0.591 44 H 0.038 0.962 45 H 0.069 0.931 46 H 0.082 0.918 47 H 0.050 0.950 48 H 0.059 0.941 49 H 0.077 0.923 50 H 0.068 0.932 51 H 0.045 0.955 52 H 0.037 0.963 53 H 0.008 0.992 54 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.803 -1.279 7.613 17.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.287 3.713 3 O -0.490 6.490 4 N -0.372 5.372 5 C -0.007 4.007 6 C -0.156 4.156 7 C -0.152 4.152 8 C -0.129 4.129 9 C -0.177 4.177 10 C 0.290 3.710 11 O -0.481 6.481 12 N -0.345 5.345 13 C 0.018 3.982 14 C 0.054 3.946 15 H 0.050 0.950 16 C -0.162 4.162 17 C -0.140 4.140 18 C -0.170 4.170 19 C 0.033 3.967 20 N -0.334 5.334 21 C -0.454 4.454 22 H 0.063 0.937 23 C -0.258 4.258 24 N -0.583 5.583 25 Si 0.920 3.080 26 H -0.220 1.220 27 H -0.220 1.220 28 H -0.203 1.203 29 H 0.125 0.875 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.255 0.745 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.128 0.872 42 H 0.108 0.892 43 H 0.245 0.755 44 H 0.056 0.944 45 H 0.087 0.913 46 H 0.100 0.900 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.095 0.905 50 H 0.087 0.913 51 H 0.064 0.936 52 H 0.055 0.945 53 H 0.026 0.974 54 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.930 -0.082 6.387 17.164 hybrid contribution 0.604 -1.021 0.785 1.422 sum -15.327 -1.103 7.172 16.958 Atomic orbital electron populations 1.21870 0.88044 1.06451 1.05846 1.21697 0.92482 0.82873 0.74227 1.90713 1.72306 1.33513 1.52493 1.46142 1.07410 1.09335 1.74345 1.21322 0.80089 0.97939 1.01390 1.21675 0.95590 0.94510 1.03803 1.21483 0.94940 0.95718 1.03065 1.21203 0.92061 0.97044 1.02557 1.21706 0.98484 0.92257 1.05280 1.21229 0.82030 0.92579 0.75188 1.90594 1.56227 1.47952 1.53350 1.46075 1.06937 1.09373 1.72157 1.21140 0.93799 0.83382 0.99844 1.20889 0.91218 0.93255 0.89233 0.95024 1.21889 0.96574 0.95937 1.01778 1.21343 0.95171 1.00689 0.96755 1.21893 1.00004 0.96962 0.98142 1.20700 0.84185 0.94259 0.97569 1.44295 1.02680 1.61919 1.24457 1.19864 0.97349 1.05336 1.22888 0.93722 1.26608 1.00465 0.92805 1.05909 1.70877 1.27217 1.38837 1.21354 0.83120 0.75207 0.75362 0.74334 1.22015 1.21983 1.20335 0.87479 0.88085 0.88216 0.74463 0.92400 0.92927 0.90614 0.89925 0.90664 0.91759 0.92764 0.91480 0.87203 0.89157 0.75487 0.94373 0.91330 0.89966 0.93080 0.92194 0.90472 0.91294 0.93579 0.94477 0.97393 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 10.39 71.24 0.74 -0.56 16 2 C 0.50 9.05 7.94 87.66 0.70 9.74 16 3 O -0.61 -17.97 17.10 -3.05 -0.05 -18.02 16 4 N -0.72 -10.05 5.56 -463.06 -2.57 -12.62 16 5 C 0.12 2.01 5.67 86.38 0.49 2.50 16 6 C -0.12 -1.72 5.33 30.60 0.16 -1.56 16 7 C -0.11 -2.09 5.21 30.60 0.16 -1.93 16 8 C -0.09 -2.17 4.50 30.59 0.14 -2.04 16 9 C -0.14 -3.87 5.70 29.85 0.17 -3.70 16 10 C 0.50 18.35 7.83 87.66 0.69 19.03 16 11 O -0.60 -25.10 15.98 -3.05 -0.05 -25.15 16 12 N -0.70 -26.42 3.87 -463.05 -1.79 -28.21 16 13 C 0.14 5.37 4.44 86.38 0.38 5.75 16 14 C 0.16 5.93 3.02 44.97 0.14 6.07 16 15 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 16 C -0.12 -3.77 5.37 30.67 0.16 -3.60 16 17 C -0.10 -2.94 5.89 30.62 0.18 -2.76 16 18 C -0.13 -4.51 6.06 30.53 0.19 -4.32 16 19 C 0.16 6.90 4.68 86.22 0.40 7.30 16 20 N -0.61 -27.16 2.77 -676.06 -1.88 -29.04 16 21 C -0.32 -16.16 6.75 84.03 0.57 -15.59 16 22 H 0.05 2.36 6.03 -2.91 -0.02 2.34 16 23 C -0.06 -3.11 4.74 84.86 0.40 -2.71 16 24 N -0.94 -52.65 12.60 21.65 0.27 -52.38 16 25 Si 1.09 49.30 29.97 68.60 2.06 51.35 16 26 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 27 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 28 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 29 H 0.11 0.17 7.91 -2.39 -0.02 0.16 16 30 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.42 2.92 8.31 -92.71 -0.77 2.15 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.05 1.46 8.10 -2.39 -0.02 1.44 16 40 H 0.07 1.61 8.10 -2.39 -0.02 1.59 16 41 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 42 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 43 H 0.41 16.29 7.36 -92.71 -0.68 15.61 16 44 H 0.04 1.63 7.43 -2.39 -0.02 1.61 16 45 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 46 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 47 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 50 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 51 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 52 H 0.04 1.87 6.64 -2.39 -0.02 1.85 16 53 H 0.01 0.36 7.80 -2.39 -0.02 0.34 16 54 H 0.26 14.60 6.66 -92.71 -0.62 13.99 16 Total: -1.00 -71.14 423.61 1.23 -69.91 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: -0.43 Total: 32.53 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 5.67 Total: 11.63 kcal Atomic # 7 Polarization: -116.28 SS G_CDS: -5.97 Total: -122.25 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -0.10 Total: -43.17 kcal Atomic # 14 Polarization: 49.30 SS G_CDS: 2.06 Total: 51.35 kcal Total: -71.14 1.23 -69.91 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714118009.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.289 kcal (2) G-P(sol) polarization free energy of solvation -71.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds