Wall clock time and date at job start Sat Apr 11 2020 05:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21284 * 120.00096 * 2 1 4 4 N 1.34779 * 120.00208 * 180.02562 * 2 1 3 5 5 C 1.46496 * 120.00447 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47294 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.47127 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47127 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47131 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47188 * 179.97438 * 9 8 7 11 11 O 1.21282 * 120.00025 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00035 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00217 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.46856 * 35.00333 * 13 12 10 15 15 C 1.53004 * 109.47545 * 155.00214 * 13 12 10 16 16 C 1.52997 * 109.47280 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47061 * 300.00199 * 16 15 13 18 18 H 1.08994 * 109.47000 * 299.99569 * 17 16 15 19 19 N 1.46499 * 109.46925 * 180.02562 * 17 16 15 20 20 C 1.36932 * 120.00347 * 154.99621 * 19 17 16 21 21 H 1.08005 * 119.99903 * 0.02562 * 20 19 17 22 22 C 1.38811 * 120.00339 * 179.97438 * 20 19 17 23 23 N 1.31615 * 119.99842 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00129 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47115 * 60.00377 * 24 22 20 26 26 H 1.48502 * 109.47314 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47037 * 300.00685 * 24 22 20 28 28 C 1.52991 * 109.47163 * 59.99994 * 17 16 15 29 29 C 1.53001 * 109.46925 * 275.00492 * 13 12 10 30 30 H 1.09000 * 109.47333 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46872 * 299.99778 * 1 2 3 32 32 H 1.08994 * 109.47300 * 59.99973 * 1 2 3 33 33 H 0.97006 * 119.99798 * 0.02562 * 4 2 1 34 34 H 1.09001 * 109.47054 * 59.99647 * 5 4 2 35 35 H 1.09004 * 109.47074 * 300.00161 * 5 4 2 36 36 H 1.09001 * 109.46832 * 60.00150 * 6 5 4 37 37 H 1.08993 * 109.47194 * 299.99671 * 6 5 4 38 38 H 1.09001 * 109.46801 * 300.00272 * 7 6 5 39 39 H 1.09001 * 109.46998 * 59.99868 * 7 6 5 40 40 H 1.08996 * 109.46952 * 300.00302 * 8 7 6 41 41 H 1.09001 * 109.46832 * 60.00321 * 8 7 6 42 42 H 1.09000 * 109.47380 * 300.00763 * 9 8 7 43 43 H 1.09001 * 109.46997 * 60.00426 * 9 8 7 44 44 H 0.97002 * 119.99767 * 0.02562 * 12 10 9 45 45 H 1.08996 * 109.46522 * 300.00315 * 15 13 12 46 46 H 1.08998 * 109.46604 * 59.99511 * 15 13 12 47 47 H 1.09002 * 109.46984 * 60.00202 * 16 15 13 48 48 H 1.09003 * 109.46779 * 179.97438 * 16 15 13 49 49 H 0.97007 * 119.99773 * 335.00001 * 19 17 16 50 50 H 0.97001 * 119.99754 * 179.97438 * 23 22 20 51 51 H 1.09004 * 109.47212 * 60.00365 * 28 17 16 52 52 H 1.09002 * 109.47054 * 180.02562 * 28 17 16 53 53 H 1.08994 * 109.47000 * 299.99328 * 29 13 12 54 54 H 1.08990 * 109.47560 * 60.00195 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1673 -0.0011 6 6 4.1558 -2.6097 -0.0010 7 6 5.6859 -2.6098 -0.0022 8 6 6.1959 -4.0522 -0.0027 9 6 7.7258 -4.0523 -0.0046 10 6 8.2282 -5.4731 -0.0045 11 8 7.4400 -6.3949 -0.0035 12 7 9.5532 -5.7193 -0.0065 13 6 10.0416 -7.1005 -0.0070 14 1 9.3681 -7.7238 -0.5953 15 6 11.4433 -7.1458 -0.6187 16 6 11.9535 -8.5882 -0.6186 17 6 12.0072 -9.1100 0.8187 18 1 12.6806 -8.4864 1.4067 19 7 12.4964 -10.4909 0.8189 20 6 13.1089 -11.0002 1.9326 21 1 13.2310 -10.3840 2.8112 22 6 13.5719 -12.3088 1.9329 23 7 13.4226 -13.0600 0.8625 24 14 14.4068 -13.0038 3.4526 25 1 13.4654 -12.9562 4.6001 26 1 14.8066 -14.4112 3.1979 27 1 15.6127 -12.1964 3.7678 28 6 10.6056 -9.0648 1.4304 29 6 10.0952 -7.6229 1.4301 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 1.6959 -2.0073 -0.0013 34 1 4.0095 -0.6536 0.8888 35 1 4.0089 -0.6532 -0.8911 36 1 3.7921 -3.1237 -0.8907 37 1 3.7929 -3.1233 0.8892 38 1 6.0485 -2.0962 -0.8927 39 1 6.0499 -2.0956 0.8873 40 1 5.8332 -4.5661 0.8875 41 1 5.8318 -4.5659 -0.8925 42 1 8.0881 -3.5384 -0.8950 43 1 8.0903 -3.5384 0.8849 44 1 10.1835 -4.9820 -0.0077 45 1 11.4050 -6.7736 -1.6424 46 1 12.1166 -6.5224 -0.0305 47 1 11.2801 -9.2118 -1.2066 48 1 12.9519 -8.6204 -1.0548 49 1 12.3864 -11.0445 0.0299 50 1 13.7465 -13.9743 0.8626 51 1 9.9323 -9.6885 0.8424 52 1 10.6440 -9.4361 2.4545 53 1 10.7687 -6.9997 2.0183 54 1 9.0967 -7.5908 1.8659 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714313104.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:07 Heat of formation + Delta-G solvation = -135.497944 kcal Electronic energy + Delta-G solvation = -28196.675846 eV Core-core repulsion = 24165.556618 eV Total energy + Delta-G solvation = -4031.119228 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.04473 -40.59436 -39.33307 -37.32454 -36.34998 -35.28967 -34.60729 -32.74088 -32.15518 -31.69268 -30.46403 -28.99296 -27.07792 -25.50536 -23.75779 -23.44747 -22.39568 -22.09264 -21.33974 -21.28826 -20.72076 -19.11124 -17.92249 -17.68921 -17.30533 -17.15819 -16.99803 -16.80398 -16.55681 -15.91007 -15.71862 -15.38605 -15.11620 -14.92344 -14.86233 -14.61186 -14.37367 -14.04206 -13.91789 -13.46813 -13.36501 -13.25965 -13.14794 -13.08523 -12.92505 -12.88053 -12.78164 -12.44747 -12.30945 -12.16969 -12.10970 -12.03865 -11.98180 -11.93854 -11.65485 -11.45237 -11.40481 -11.19814 -10.99703 -10.85858 -10.69918 -10.12805 -9.96731 -8.99420 -7.93236 -5.21458 1.46757 1.49694 1.55692 1.62248 1.74667 2.23073 2.35735 2.57116 3.39629 3.70527 3.77980 3.85109 3.90876 3.91534 3.95259 4.00589 4.16192 4.26650 4.30882 4.37541 4.40981 4.47261 4.50764 4.54195 4.59967 4.63750 4.65312 4.68009 4.69996 4.83365 4.85989 4.90986 4.98633 5.01348 5.05636 5.08335 5.12589 5.16503 5.23390 5.25176 5.28112 5.42262 5.45662 5.48849 5.51796 5.54960 5.60584 5.64736 6.29428 6.56783 6.68516 7.25058 7.34881 7.39322 8.12608 8.35048 9.30391 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.033293 B = 0.001258 C = 0.001238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.807661 B =22254.403999 C =22618.395972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.500 3.500 3 O -0.607 6.607 4 N -0.722 5.722 5 C 0.116 3.884 6 C -0.123 4.123 7 C -0.110 4.110 8 C -0.101 4.101 9 C -0.133 4.133 10 C 0.503 3.497 11 O -0.592 6.592 12 N -0.714 5.714 13 C 0.151 3.849 14 H 0.060 0.940 15 C -0.105 4.105 16 C -0.114 4.114 17 C 0.172 3.828 18 H 0.048 0.952 19 N -0.740 5.740 20 C -0.240 4.240 21 H 0.075 0.925 22 C -0.076 4.076 23 N -0.971 5.971 24 Si 0.970 3.030 25 H -0.281 1.281 26 H -0.296 1.296 27 H -0.275 1.275 28 C -0.123 4.123 29 C -0.111 4.111 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.417 0.583 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.417 0.583 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.051 0.949 48 H 0.066 0.934 49 H 0.371 0.629 50 H 0.250 0.750 51 H 0.036 0.964 52 H 0.039 0.961 53 H 0.076 0.924 54 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.823 28.403 -4.125 35.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.289 3.711 3 O -0.489 6.489 4 N -0.375 5.375 5 C -0.008 4.008 6 C -0.161 4.161 7 C -0.148 4.148 8 C -0.139 4.139 9 C -0.172 4.172 10 C 0.291 3.709 11 O -0.472 6.472 12 N -0.366 5.366 13 C 0.046 3.954 14 H 0.078 0.922 15 C -0.143 4.143 16 C -0.153 4.153 17 C 0.064 3.936 18 H 0.066 0.934 19 N -0.379 5.379 20 C -0.372 4.372 21 H 0.093 0.907 22 C -0.268 4.268 23 N -0.622 5.622 24 Si 0.799 3.201 25 H -0.207 1.207 26 H -0.222 1.222 27 H -0.201 1.201 28 C -0.164 4.164 29 C -0.150 4.150 30 H 0.124 0.876 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.254 0.746 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.255 0.745 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.069 0.931 48 H 0.085 0.915 49 H 0.202 0.798 50 H 0.059 0.941 51 H 0.055 0.945 52 H 0.058 0.942 53 H 0.094 0.906 54 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -20.853 28.476 -3.956 35.516 hybrid contribution 0.509 -1.484 0.570 1.669 sum -20.344 26.992 -3.387 33.970 Atomic orbital electron populations 1.21881 0.88390 1.06380 1.05821 1.21618 0.92355 0.82933 0.74225 1.90707 1.72243 1.33462 1.52501 1.46178 1.07701 1.09227 1.74346 1.21364 0.79843 0.98037 1.01507 1.21720 0.96583 0.94326 1.03465 1.21461 0.94148 0.95744 1.03477 1.21262 0.93475 0.96912 1.02242 1.21741 0.97425 0.91302 1.06746 1.21542 0.82073 0.92893 0.74360 1.90707 1.56531 1.48500 1.51508 1.46021 1.07293 1.08538 1.74714 1.20782 0.95777 0.83072 0.95737 0.92216 1.21641 0.94201 0.96189 1.02265 1.21644 1.01211 0.96340 0.96080 1.20487 0.92486 0.85148 0.95449 0.93423 1.42667 1.69626 1.10644 1.14931 1.19605 1.28415 0.95514 0.93630 0.90723 1.25528 1.03575 0.97356 1.00343 1.69813 1.53951 1.08452 1.30020 0.85260 0.78637 0.76943 0.79239 1.20685 1.22244 1.20148 1.22021 0.98469 0.95827 1.00089 1.21741 1.00320 0.95786 0.97177 0.87612 0.88229 0.88187 0.74574 0.92523 0.92417 0.90665 0.90795 0.90549 0.90719 0.92848 0.92621 0.86250 0.86530 0.74538 0.89383 0.89389 0.93053 0.91489 0.79761 0.94113 0.94466 0.94222 0.90582 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.78 10.39 71.23 0.74 -0.04 16 2 C 0.50 6.92 7.94 87.66 0.70 7.61 16 3 O -0.61 -15.05 17.10 -3.04 -0.05 -15.10 16 4 N -0.72 -6.60 5.56 -463.06 -2.57 -9.17 16 5 C 0.12 1.23 5.67 86.38 0.49 1.72 16 6 C -0.12 -0.90 5.33 30.60 0.16 -0.74 16 7 C -0.11 -0.83 5.21 30.60 0.16 -0.67 16 8 C -0.10 -1.25 4.50 30.59 0.14 -1.11 16 9 C -0.13 -1.39 5.70 29.85 0.17 -1.22 16 10 C 0.50 10.24 7.79 87.66 0.68 10.92 16 11 O -0.59 -18.41 15.64 -3.04 -0.05 -18.46 16 12 N -0.71 -12.41 5.08 -442.53 -2.25 -14.65 16 13 C 0.15 3.68 2.46 44.99 0.11 3.79 16 14 H 0.06 1.82 7.58 -2.39 -0.02 1.80 16 15 C -0.10 -2.24 5.39 30.59 0.16 -2.07 16 16 C -0.11 -3.51 5.39 30.59 0.16 -3.35 16 17 C 0.17 6.70 2.77 44.99 0.12 6.82 16 18 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 19 N -0.74 -37.72 5.12 -322.96 -1.65 -39.37 16 20 C -0.24 -13.44 9.93 84.03 0.83 -12.60 16 21 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 22 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 23 N -0.97 -60.26 13.06 21.65 0.28 -59.98 16 24 Si 0.97 46.51 29.55 68.60 2.03 48.54 16 25 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 26 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 27 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 28 C -0.12 -4.57 5.50 30.58 0.17 -4.40 16 29 C -0.11 -3.17 5.49 30.58 0.17 -3.00 16 30 H 0.11 -0.14 7.91 -2.39 -0.02 -0.15 16 31 H 0.10 0.42 8.14 -2.38 -0.02 0.40 16 32 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.42 1.18 8.31 -92.70 -0.77 0.41 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 41 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 42 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.42 4.04 8.60 -92.71 -0.80 3.24 16 45 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.37 20.43 7.80 -92.70 -0.72 19.71 16 50 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 51 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 52 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 53 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 54 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -82.63 434.58 -0.23 -82.86 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: -1.41 Total: 27.63 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: 5.44 Total: -2.28 kcal Atomic # 7 Polarization: -116.99 SS G_CDS: -6.19 Total: -123.18 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -0.10 Total: -33.56 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -82.63 -0.23 -82.86 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714313104.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.638 kcal (2) G-P(sol) polarization free energy of solvation -82.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds