Wall clock time and date at job start Sat Apr 11 2020 05:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 119.99755 * 2 1 4 4 O 1.21271 * 119.99980 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99478 * 179.97438 * 3 2 1 6 6 C 1.53008 * 109.46726 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.47235 * 180.02562 * 6 5 3 8 8 C 1.52997 * 109.47259 * 180.02562 * 7 6 5 9 9 C 1.50705 * 109.47141 * 180.02562 * 8 7 6 10 10 O 1.21287 * 119.99862 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99871 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99623 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.46704 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.47070 * 180.02562 * 13 12 11 15 15 C 1.53349 * 109.42091 * 295.13062 * 14 13 12 16 16 C 1.53196 * 109.15353 * 178.67328 * 15 14 13 17 17 N 1.46928 * 108.89135 * 54.57497 * 16 15 14 18 18 C 1.36936 * 120.63013 * 126.29699 * 17 16 15 19 19 H 1.07999 * 120.00022 * 331.83633 * 18 17 16 20 20 C 1.38813 * 120.00005 * 151.82709 * 18 17 16 21 21 N 1.31618 * 120.00004 * 343.09585 * 20 18 17 22 22 Si 1.86806 * 119.99953 * 163.09475 * 20 18 17 23 23 H 1.48494 * 109.47083 * 60.00061 * 22 20 18 24 24 H 1.48500 * 109.46851 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47024 * 300.00112 * 22 20 18 26 26 C 1.46924 * 118.73859 * 306.32337 * 17 16 15 27 27 C 1.53044 * 109.46279 * 175.00212 * 14 13 12 28 28 H 1.08997 * 109.46840 * 60.00469 * 1 2 3 29 29 H 1.09004 * 109.47026 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47391 * 300.00184 * 1 2 3 31 31 H 0.97002 * 119.99809 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.46947 * 60.00540 * 5 3 2 33 33 H 1.08997 * 109.47255 * 299.99687 * 5 3 2 34 34 H 1.08996 * 109.46988 * 60.00165 * 6 5 3 35 35 H 1.08998 * 109.47369 * 300.00442 * 6 5 3 36 36 H 1.09005 * 109.47177 * 59.99989 * 7 6 5 37 37 H 1.09008 * 109.47314 * 300.00387 * 7 6 5 38 38 H 1.08996 * 109.47275 * 59.99929 * 8 7 6 39 39 H 1.08997 * 109.46839 * 299.99715 * 8 7 6 40 40 H 0.96999 * 119.99865 * 359.97438 * 11 9 8 41 41 H 1.09000 * 109.46866 * 60.00504 * 12 11 9 42 42 H 1.08997 * 109.47192 * 299.99739 * 12 11 9 43 43 H 1.08996 * 109.47095 * 60.00212 * 13 12 11 44 44 H 1.08998 * 109.47427 * 300.00388 * 13 12 11 45 45 H 1.09003 * 109.46065 * 55.03141 * 14 13 12 46 46 H 1.08998 * 109.68701 * 58.70817 * 15 14 13 47 47 H 1.09000 * 109.47234 * 298.50885 * 15 14 13 48 48 H 1.08996 * 109.58345 * 294.72319 * 16 15 14 49 49 H 1.08994 * 109.58644 * 174.43734 * 16 15 14 50 50 H 0.96996 * 119.99787 * 179.97438 * 21 20 18 51 51 H 1.09000 * 109.58664 * 173.39523 * 26 17 16 52 52 H 1.08996 * 109.58580 * 293.67452 * 26 17 16 53 53 H 1.08992 * 109.49619 * 61.43154 * 27 14 13 54 54 H 1.08999 * 109.52313 * 301.35168 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2174 -0.0005 5 6 3.6458 1.1672 0.0006 6 6 4.1558 2.6097 -0.0002 7 6 5.6858 2.6098 -0.0002 8 6 6.1958 4.0523 -0.0004 9 6 7.7028 4.0523 -0.0011 10 8 8.3093 3.0019 -0.0009 11 7 8.3767 5.2195 -0.0018 12 6 9.8417 5.2195 -0.0019 13 6 10.3516 6.6620 -0.0034 14 6 11.8816 6.6621 -0.0042 15 6 12.3921 6.0491 1.3055 16 6 13.9237 6.0218 1.2841 17 7 14.4200 7.3787 1.0173 18 6 15.3282 7.9670 1.8564 19 1 15.3561 7.6917 2.9004 20 6 16.2132 8.9170 1.3652 21 7 16.4176 9.0179 0.0689 22 14 17.1140 10.0521 2.5440 23 1 17.9379 9.2432 3.4778 24 1 17.9931 10.9685 1.7742 25 1 16.1265 10.8475 3.3171 26 6 13.9229 8.0926 -0.1667 27 6 12.3914 8.0995 -0.1314 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.9500 -0.8401 0.0004 32 1 4.0095 0.6532 -0.8892 33 1 4.0088 0.6536 0.8908 34 1 3.7922 3.1241 0.8893 35 1 3.7928 3.1230 -0.8906 36 1 6.0492 2.0955 -0.8900 37 1 6.0492 2.0964 0.8900 38 1 5.8325 4.5662 0.8895 39 1 5.8324 4.5660 -0.8904 40 1 7.8916 6.0595 -0.0023 41 1 10.2049 4.7052 -0.8916 42 1 10.2051 4.7062 0.8884 43 1 9.9884 7.1767 0.8860 44 1 9.9882 7.1750 -0.8939 45 1 12.2443 6.0723 -0.8460 46 1 12.0116 5.0328 1.4081 47 1 12.0507 6.6526 2.1465 48 1 14.2662 5.3467 0.4999 49 1 14.2965 5.6795 2.2495 50 1 17.0357 9.6820 -0.2743 51 1 14.2932 9.1177 -0.1575 52 1 14.2675 7.5878 -1.0692 53 1 12.0497 8.6836 0.7230 54 1 12.0083 8.5418 -1.0511 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714331663.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:11 Heat of formation + Delta-G solvation = -116.964438 kcal Electronic energy + Delta-G solvation = -28320.091882 eV Core-core repulsion = 24289.776327 eV Total energy + Delta-G solvation = -4030.315555 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.83168 -40.58836 -39.49117 -36.80255 -36.09750 -35.52817 -35.02632 -33.08931 -32.04228 -31.52599 -30.00555 -28.22701 -26.90457 -25.57162 -24.41417 -23.55469 -22.28117 -22.12977 -21.32063 -21.13953 -20.56436 -18.69318 -18.11124 -17.85595 -17.20033 -16.95317 -16.81300 -16.69724 -16.61706 -15.89345 -15.67055 -15.29438 -15.15421 -14.91302 -14.82752 -14.78305 -14.38087 -14.17947 -13.88134 -13.83501 -13.43015 -13.31141 -13.08821 -13.01907 -12.91425 -12.81784 -12.52876 -12.48839 -12.29021 -12.19798 -12.11795 -12.04515 -11.93267 -11.80507 -11.51996 -11.47659 -11.11837 -10.97864 -10.94270 -10.73706 -10.51687 -10.11630 -10.00889 -8.66174 -7.86770 -5.32578 1.46521 1.48759 1.55838 1.66030 1.72028 2.23439 2.40803 2.51705 3.27325 3.72164 3.77244 3.86579 3.89183 3.93581 3.95189 4.07051 4.15506 4.31840 4.41721 4.42358 4.45223 4.54395 4.59609 4.60906 4.63768 4.68419 4.75989 4.79368 4.83423 4.88807 4.89972 4.91013 4.95489 5.04140 5.08585 5.10955 5.12972 5.28143 5.35872 5.36829 5.41171 5.43838 5.47638 5.50407 5.55573 5.57316 5.67567 5.81638 6.40061 6.57320 6.64002 7.16165 7.29127 7.34060 7.88263 8.39927 9.19181 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.046203 B = 0.001254 C = 0.001249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.880959 B =22324.484166 C =22413.222677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.729 5.729 3 C 0.504 3.496 4 O -0.590 6.590 5 C -0.137 4.137 6 C -0.098 4.098 7 C -0.098 4.098 8 C -0.135 4.135 9 C 0.504 3.496 10 O -0.590 6.590 11 N -0.721 5.721 12 C 0.122 3.878 13 C -0.108 4.108 14 C -0.071 4.071 15 C -0.117 4.117 16 C 0.138 3.862 17 N -0.611 5.611 18 C -0.268 4.268 19 H 0.064 0.936 20 C -0.049 4.049 21 N -0.936 5.936 22 Si 0.967 3.033 23 H -0.276 1.276 24 H -0.293 1.293 25 H -0.277 1.277 26 C 0.174 3.826 27 C -0.120 4.120 28 H 0.047 0.953 29 H 0.108 0.892 30 H 0.047 0.953 31 H 0.419 0.581 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.416 0.584 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.058 0.942 46 H 0.074 0.926 47 H 0.056 0.944 48 H 0.008 0.992 49 H 0.048 0.952 50 H 0.250 0.750 51 H 0.051 0.949 52 H -0.009 1.009 53 H 0.052 0.948 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.946 -16.126 -1.518 35.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.381 5.381 3 C 0.292 3.708 4 O -0.470 6.470 5 C -0.177 4.177 6 C -0.136 4.136 7 C -0.136 4.136 8 C -0.174 4.174 9 C 0.292 3.708 10 O -0.471 6.471 11 N -0.373 5.373 12 C -0.002 4.002 13 C -0.146 4.146 14 C -0.090 4.090 15 C -0.156 4.156 16 C 0.012 3.988 17 N -0.335 5.335 18 C -0.398 4.398 19 H 0.082 0.918 20 C -0.245 4.245 21 N -0.582 5.582 22 Si 0.795 3.205 23 H -0.202 1.202 24 H -0.219 1.219 25 H -0.203 1.203 26 C 0.049 3.951 27 C -0.159 4.159 28 H 0.065 0.935 29 H 0.126 0.874 30 H 0.065 0.935 31 H 0.256 0.744 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.253 0.747 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.076 0.924 46 H 0.092 0.908 47 H 0.075 0.925 48 H 0.026 0.974 49 H 0.066 0.934 50 H 0.059 0.941 51 H 0.069 0.931 52 H 0.009 0.991 53 H 0.071 0.929 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -31.845 -16.040 -1.590 35.692 hybrid contribution 1.134 0.664 0.326 1.354 sum -30.711 -15.376 -1.264 34.368 Atomic orbital electron populations 1.21630 0.79427 1.04005 1.01171 1.45856 1.08240 1.09081 1.74955 1.21339 0.91583 0.83367 0.74526 1.90689 1.71724 1.33126 1.51500 1.21713 0.89447 1.00035 1.06464 1.21258 0.93955 0.95447 1.02940 1.21269 0.94322 0.95103 1.02944 1.21719 0.88889 1.00371 1.06467 1.21411 0.91693 0.83044 0.74604 1.90692 1.71795 1.32975 1.51611 1.46031 1.07187 1.09346 1.74778 1.21300 0.79826 0.97707 1.01348 1.21691 0.94269 0.94936 1.03658 1.20944 0.94605 0.96015 0.97449 1.22023 0.95501 1.00447 0.97589 1.21069 0.93965 0.85963 0.97784 1.44323 1.48347 1.12558 1.28279 1.19513 1.09986 1.19527 0.90768 0.91826 1.25797 0.98316 1.03170 0.97181 1.70188 1.38440 1.36567 1.13013 0.85349 0.78105 0.78789 0.78262 1.20185 1.21883 1.20283 1.20610 0.91001 0.96515 0.86988 1.22012 0.96399 0.96522 1.01003 0.93459 0.87385 0.93468 0.74413 0.86835 0.86859 0.91848 0.91809 0.91834 0.91887 0.86856 0.86794 0.74707 0.92870 0.92433 0.90424 0.89852 0.92366 0.90752 0.92529 0.97409 0.93368 0.94096 0.93105 0.99062 0.92901 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 10.70 127.77 1.37 1.95 16 2 N -0.73 -5.53 5.71 -484.53 -2.77 -8.30 16 3 C 0.50 6.94 7.83 87.66 0.69 7.63 16 4 O -0.59 -13.77 15.98 -3.00 -0.05 -13.82 16 5 C -0.14 -1.14 5.70 29.85 0.17 -0.97 16 6 C -0.10 -1.13 4.50 30.60 0.14 -0.99 16 7 C -0.10 -1.26 4.50 30.59 0.14 -1.12 16 8 C -0.13 -1.60 5.70 29.85 0.17 -1.43 16 9 C 0.50 10.13 7.83 87.66 0.69 10.82 16 10 O -0.59 -17.41 15.98 -3.05 -0.05 -17.46 16 11 N -0.72 -12.41 5.56 -463.05 -2.57 -14.98 16 12 C 0.12 2.69 5.43 86.38 0.47 3.16 16 13 C -0.11 -2.29 4.80 30.59 0.15 -2.14 16 14 C -0.07 -2.14 2.15 -10.66 -0.02 -2.17 16 15 C -0.12 -3.86 5.16 30.78 0.16 -3.70 16 16 C 0.14 5.91 6.51 86.36 0.56 6.47 16 17 N -0.61 -31.56 2.99 -699.11 -2.09 -33.66 16 18 C -0.27 -15.14 9.58 84.03 0.81 -14.34 16 19 H 0.06 3.51 7.88 -2.91 -0.02 3.49 16 20 C -0.05 -2.80 4.92 84.86 0.42 -2.39 16 21 N -0.94 -56.39 11.20 21.65 0.24 -56.15 16 22 Si 0.97 45.40 29.59 68.60 2.03 47.43 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 26 C 0.17 8.52 5.30 86.36 0.46 8.98 16 27 C -0.12 -4.32 5.36 30.67 0.16 -4.16 16 28 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.11 0.03 8.14 -2.38 -0.02 0.01 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.42 0.29 8.83 -92.71 -0.82 -0.53 16 32 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.06 0.84 8.10 -2.39 -0.02 0.82 16 35 H 0.06 0.84 8.10 -2.39 -0.02 0.82 16 36 H 0.06 0.92 8.10 -2.38 -0.02 0.90 16 37 H 0.06 0.92 8.10 -2.38 -0.02 0.90 16 38 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.42 4.42 8.47 -92.71 -0.79 3.63 16 41 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.06 1.44 6.54 -2.39 -0.02 1.43 16 43 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.07 2.14 6.52 -2.39 -0.02 2.13 16 47 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 49 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 50 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 51 H 0.05 2.81 6.06 -2.39 -0.01 2.80 16 52 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 53 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 54 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -80.61 427.53 0.53 -80.08 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -0.73 Total: 11.26 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 6.51 Total: 5.59 kcal Atomic # 7 Polarization: -105.89 SS G_CDS: -7.19 Total: -113.08 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.10 Total: -31.28 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -80.61 0.53 -80.08 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714331663.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.882 kcal (2) G-P(sol) polarization free energy of solvation -80.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds