Wall clock time and date at job start Sat Apr 11 2020 05:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21283 * 119.99839 * 2 1 4 4 N 1.34773 * 120.00521 * 180.02562 * 2 1 3 5 5 C 1.46499 * 120.00375 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47416 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.46975 * 180.02562 * 6 5 4 8 8 C 1.53007 * 109.46782 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.46909 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.46927 * 179.97438 * 9 8 7 11 11 O 1.21282 * 120.00105 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99940 * 179.97438 * 10 9 8 13 13 C 1.47017 * 125.64875 * 0.03242 * 12 10 9 14 14 C 1.54322 * 107.27410 * 181.01951 * 13 12 10 15 15 C 1.55157 * 102.93869 * 22.19015 * 14 13 12 16 16 H 1.09003 * 111.00243 * 82.61436 * 15 14 13 17 17 C 1.53007 * 111.00291 * 206.42193 * 15 14 13 18 18 N 1.46499 * 109.47104 * 293.54952 * 17 15 14 19 19 C 1.46502 * 119.99760 * 90.00172 * 18 17 15 20 20 C 1.36939 * 120.00124 * 269.99713 * 18 17 15 21 21 H 1.08002 * 119.99792 * 142.17780 * 20 18 17 22 22 C 1.38818 * 119.99926 * 322.18086 * 20 18 17 23 23 N 1.31621 * 119.99629 * 157.20388 * 22 20 18 24 24 Si 1.86801 * 119.99908 * 337.20683 * 22 20 18 25 25 H 1.48500 * 109.47290 * 95.81548 * 24 22 20 26 26 H 1.48499 * 109.46842 * 215.81376 * 24 22 20 27 27 H 1.48497 * 109.46995 * 335.81244 * 24 22 20 28 28 C 1.47427 * 125.64938 * 179.71832 * 12 10 9 29 29 H 1.09001 * 109.46638 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46807 * 299.99497 * 1 2 3 31 31 H 1.08994 * 109.47531 * 60.00207 * 1 2 3 32 32 H 0.96997 * 119.99868 * 359.97438 * 4 2 1 33 33 H 1.09008 * 109.47093 * 59.99834 * 5 4 2 34 34 H 1.09005 * 109.46911 * 300.00381 * 5 4 2 35 35 H 1.08998 * 109.47260 * 59.99942 * 6 5 4 36 36 H 1.08999 * 109.46697 * 300.00147 * 6 5 4 37 37 H 1.08996 * 109.47073 * 299.99941 * 7 6 5 38 38 H 1.08998 * 109.47104 * 60.00376 * 7 6 5 39 39 H 1.08999 * 109.46975 * 300.00102 * 8 7 6 40 40 H 1.08995 * 109.46447 * 60.00051 * 8 7 6 41 41 H 1.08996 * 109.47253 * 300.00350 * 9 8 7 42 42 H 1.09008 * 109.47086 * 60.00219 * 9 8 7 43 43 H 1.09001 * 109.88720 * 300.43736 * 13 12 10 44 44 H 1.09001 * 109.88579 * 61.44483 * 13 12 10 45 45 H 1.08999 * 110.72253 * 140.55416 * 14 13 12 46 46 H 1.09005 * 110.71986 * 263.83052 * 14 13 12 47 47 H 1.08997 * 109.46913 * 53.55142 * 17 15 14 48 48 H 1.09004 * 109.46847 * 173.54907 * 17 15 14 49 49 H 1.08999 * 109.46785 * 92.88845 * 19 18 17 50 50 H 1.09000 * 109.46965 * 212.88418 * 19 18 17 51 51 H 1.08996 * 109.47319 * 332.88399 * 19 18 17 52 52 H 0.96996 * 119.99368 * 179.97438 * 23 22 20 53 53 H 1.08998 * 110.36483 * 274.75327 * 28 12 10 54 54 H 1.09006 * 110.36118 * 37.07272 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 6 4.1561 -2.6095 -0.0023 7 6 5.6861 -2.6094 -0.0022 8 6 6.1962 -4.0519 -0.0027 9 6 7.7261 -4.0518 -0.0033 10 6 8.2285 -5.4726 -0.0032 11 8 7.4405 -6.3945 -0.0031 12 7 9.5537 -5.7188 -0.0042 13 6 10.6143 -4.7007 -0.0047 14 6 11.9652 -5.4464 -0.0320 15 6 11.5851 -6.8325 -0.6164 16 1 11.5366 -6.7977 -1.7047 17 6 12.5633 -7.9119 -0.1482 18 7 13.8868 -7.6529 -0.7204 19 6 14.8465 -6.8154 0.0033 20 6 14.2269 -8.1936 -1.9317 21 1 14.8201 -7.6225 -2.6306 22 6 13.8092 -9.4758 -2.2613 23 7 13.7262 -9.8365 -3.5244 24 14 13.3647 -10.6889 -0.9122 25 1 11.8963 -10.6682 -0.6918 26 1 13.7853 -12.0546 -1.3164 27 1 14.0592 -10.3086 0.3440 28 6 10.1796 -7.0535 0.0017 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6960 -2.0072 -0.0005 33 1 4.0096 -0.6534 0.8889 34 1 4.0089 -0.6529 -0.8911 35 1 3.7924 -3.1228 -0.8924 36 1 3.7931 -3.1239 0.8875 37 1 6.0494 -2.0948 -0.8917 38 1 6.0493 -2.0963 0.8882 39 1 5.8328 -4.5661 0.8870 40 1 5.8329 -4.5653 -0.8929 41 1 8.0891 -3.5377 -0.8932 42 1 8.0898 -3.5381 0.8867 43 1 10.5216 -4.0692 -0.8883 44 1 10.5431 -4.0907 0.8958 45 1 12.6748 -4.9351 -0.6825 46 1 12.3689 -5.5500 0.9752 47 1 12.6283 -7.8961 0.9397 48 1 12.2103 -8.8894 -0.4770 49 1 15.4871 -7.4464 0.6194 50 1 15.4583 -6.2639 -0.7107 51 1 14.3083 -6.1128 0.6395 52 1 13.4347 -10.7325 -3.7546 53 1 10.2657 -7.4276 1.0219 54 1 9.6013 -7.7463 -0.6098 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714907881.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:16 Heat of formation + Delta-G solvation = -96.541473 kcal Electronic energy + Delta-G solvation = -28846.881073 eV Core-core repulsion = 24817.451124 eV Total energy + Delta-G solvation = -4029.429949 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.14641 -40.59426 -39.13618 -37.37498 -37.10728 -35.33370 -33.95953 -32.97430 -32.20219 -30.56078 -30.36944 -28.25195 -27.78104 -26.50539 -24.33105 -23.07088 -22.89571 -22.22769 -21.47381 -21.32390 -20.08745 -18.72477 -18.09126 -17.72993 -17.49506 -17.21799 -17.03488 -16.90387 -16.56457 -16.06276 -15.90143 -15.34647 -15.21975 -14.83695 -14.63218 -14.60973 -14.47064 -14.09753 -13.99940 -13.82424 -13.59313 -13.36707 -13.33602 -13.21229 -12.98467 -12.87604 -12.87359 -12.67082 -12.49514 -12.41276 -12.17202 -12.02603 -11.96602 -11.91621 -11.76524 -11.56104 -11.42368 -11.28332 -11.01329 -10.86110 -10.62843 -10.12767 -9.66241 -8.73460 -8.21532 -5.57908 1.29257 1.39277 1.49653 1.62384 1.62513 1.99724 2.32272 2.40716 3.01214 3.34863 3.54399 3.72044 3.82568 3.89800 3.93284 3.98188 4.02545 4.14138 4.22470 4.32056 4.39671 4.45764 4.48324 4.50867 4.56593 4.61980 4.65803 4.67580 4.73523 4.78502 4.78779 4.83959 4.87649 4.93318 4.96941 5.01666 5.06051 5.08075 5.12968 5.19537 5.20209 5.25873 5.30894 5.39761 5.45044 5.46206 5.50377 5.94344 6.17032 6.56564 6.57089 7.00294 7.14447 7.25363 7.64572 8.05928 8.98365 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.026643 B = 0.001511 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.688175 B =18528.854472 C =18967.764101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.499 3.501 3 O -0.607 6.607 4 N -0.721 5.721 5 C 0.117 3.883 6 C -0.122 4.122 7 C -0.110 4.110 8 C -0.099 4.099 9 C -0.126 4.126 10 C 0.514 3.486 11 O -0.596 6.596 12 N -0.620 5.620 13 C 0.102 3.898 14 C -0.109 4.109 15 C -0.109 4.109 16 H 0.052 0.948 17 C 0.146 3.854 18 N -0.620 5.620 19 C 0.121 3.879 20 C -0.256 4.256 21 H 0.043 0.957 22 C -0.019 4.019 23 N -0.948 5.948 24 Si 0.938 3.062 25 H -0.279 1.279 26 H -0.310 1.310 27 H -0.256 1.256 28 C 0.110 3.890 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.417 0.583 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.111 0.889 42 H 0.120 0.880 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.072 0.928 48 H 0.025 0.975 49 H 0.009 0.991 50 H 0.036 0.964 51 H 0.074 0.926 52 H 0.261 0.739 53 H 0.076 0.924 54 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.884 19.139 12.530 31.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.288 3.712 3 O -0.489 6.489 4 N -0.374 5.374 5 C -0.007 4.007 6 C -0.160 4.160 7 C -0.148 4.148 8 C -0.137 4.137 9 C -0.166 4.166 10 C 0.306 3.694 11 O -0.477 6.477 12 N -0.353 5.353 13 C -0.019 4.019 14 C -0.147 4.147 15 C -0.131 4.131 16 H 0.071 0.929 17 C 0.020 3.980 18 N -0.344 5.344 19 C -0.023 4.023 20 C -0.386 4.386 21 H 0.061 0.939 22 C -0.216 4.216 23 N -0.592 5.592 24 Si 0.767 3.233 25 H -0.206 1.206 26 H -0.239 1.239 27 H -0.180 1.180 28 C -0.014 4.014 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.254 0.746 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.129 0.871 42 H 0.138 0.862 43 H 0.099 0.901 44 H 0.120 0.880 45 H 0.101 0.899 46 H 0.109 0.891 47 H 0.090 0.910 48 H 0.043 0.957 49 H 0.027 0.973 50 H 0.055 0.945 51 H 0.093 0.907 52 H 0.070 0.930 53 H 0.094 0.906 54 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -21.927 19.319 12.450 31.765 hybrid contribution -0.041 -1.768 -0.283 1.791 sum -21.968 17.551 12.166 30.637 Atomic orbital electron populations 1.21877 0.88336 1.06375 1.05817 1.21629 0.92375 0.82926 0.74238 1.90709 1.72248 1.33458 1.52477 1.46165 1.07643 1.09245 1.74355 1.21354 0.79891 0.97960 1.01525 1.21708 0.96323 0.94423 1.03542 1.21454 0.94346 0.95468 1.03521 1.21270 0.92857 0.97218 1.02351 1.21723 0.97716 0.90659 1.06458 1.21327 0.80044 0.93238 0.74811 1.90672 1.55580 1.48694 1.52749 1.48761 1.05796 1.08394 1.72385 1.22291 0.85484 0.90508 1.03645 1.22613 0.96207 0.93658 1.02231 1.22797 0.92893 0.97878 0.99493 0.92917 1.21116 0.84775 0.95351 0.96743 1.44102 1.10532 1.58951 1.20844 1.21281 0.92336 0.93527 0.95152 1.18688 1.32093 0.95798 0.92038 0.93948 1.26052 0.99535 0.98813 0.97157 1.70003 1.50853 1.20145 1.18213 0.85937 0.77680 0.78151 0.81554 1.20615 1.23852 1.18029 1.22195 0.93112 0.85477 1.00596 0.87606 0.88160 0.88251 0.74564 0.92329 0.92605 0.90811 0.90463 0.90868 0.90371 0.92256 0.92908 0.87103 0.86186 0.90115 0.88029 0.89851 0.89104 0.90974 0.95674 0.97258 0.94492 0.90747 0.92994 0.90629 0.93701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 10.39 71.24 0.74 -0.14 16 2 C 0.50 7.31 7.94 87.66 0.70 8.01 16 3 O -0.61 -15.57 17.10 -3.04 -0.05 -15.62 16 4 N -0.72 -7.24 5.56 -463.05 -2.57 -9.81 16 5 C 0.12 1.38 5.67 86.38 0.49 1.87 16 6 C -0.12 -1.07 5.33 30.60 0.16 -0.91 16 7 C -0.11 -1.07 5.22 30.60 0.16 -0.91 16 8 C -0.10 -1.51 4.50 30.60 0.14 -1.37 16 9 C -0.13 -1.95 4.89 29.85 0.15 -1.81 16 10 C 0.51 13.73 7.85 87.66 0.69 14.42 16 11 O -0.60 -21.42 16.24 -3.04 -0.05 -21.47 16 12 N -0.62 -16.24 3.32 -811.37 -2.70 -18.94 16 13 C 0.10 1.90 6.48 86.73 0.56 2.47 16 14 C -0.11 -2.56 4.98 31.78 0.16 -2.41 16 15 C -0.11 -3.68 3.31 -9.33 -0.03 -3.71 16 16 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 17 C 0.15 5.70 4.02 86.38 0.35 6.04 16 18 N -0.62 -27.28 2.39 -726.92 -1.74 -29.02 16 19 C 0.12 4.19 10.35 127.77 1.32 5.51 16 20 C -0.26 -14.16 9.92 84.03 0.83 -13.32 16 21 H 0.04 2.60 8.06 -2.91 -0.02 2.58 16 22 C -0.02 -1.10 5.29 84.86 0.45 -0.65 16 23 N -0.95 -59.31 13.97 21.65 0.30 -59.01 16 24 Si 0.94 46.22 25.08 68.60 1.72 47.94 16 25 H -0.28 -13.32 6.68 99.48 0.66 -12.65 16 26 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 27 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 28 C 0.11 3.50 6.38 86.93 0.55 4.05 16 29 H 0.11 -0.08 7.91 -2.39 -0.02 -0.10 16 30 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.42 1.50 8.31 -92.71 -0.77 0.73 16 33 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 40 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 41 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.12 1.21 8.14 -2.38 -0.02 1.20 16 43 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.09 1.81 7.16 -2.38 -0.02 1.80 16 47 H 0.07 2.37 8.04 -2.39 -0.02 2.36 16 48 H 0.03 1.14 3.35 -2.38 -0.01 1.14 16 49 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 50 H 0.04 1.29 8.06 -2.39 -0.02 1.27 16 51 H 0.07 1.96 6.11 -2.39 -0.01 1.94 16 52 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 53 H 0.08 2.22 8.04 -2.39 -0.02 2.20 16 54 H 0.04 1.68 8.03 -2.38 -0.02 1.66 16 Total: -1.00 -83.05 426.80 2.38 -80.67 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 0.05 Total: 8.12 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 7.42 Total: 17.14 kcal Atomic # 7 Polarization: -110.08 SS G_CDS: -6.71 Total: -116.78 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -0.10 Total: -37.09 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.72 Total: 47.94 kcal Total: -83.05 2.38 -80.67 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714907881.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.871 kcal (2) G-P(sol) polarization free energy of solvation -83.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds