Wall clock time and date at job start Sat Apr 11 2020 05:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46849 * 110.99894 * 2 1 4 4 C 1.53041 * 109.52148 * 185.83710 * 3 2 1 5 5 C 1.53114 * 109.28106 * 300.82466 * 4 3 2 6 6 O 1.42898 * 109.52189 * 177.56169 * 5 4 3 7 7 C 1.42906 * 113.99828 * 150.00184 * 6 5 4 8 8 C 1.50706 * 109.46702 * 179.97438 * 7 6 5 9 9 O 1.21279 * 120.00072 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99762 * 179.97438 * 8 7 6 11 11 C 1.47024 * 125.64779 * 359.69733 * 10 8 7 12 12 C 1.54331 * 107.26614 * 178.84768 * 11 10 8 13 13 C 1.55156 * 103.02179 * 338.13854 * 12 11 10 14 14 H 1.09008 * 111.00617 * 277.23879 * 13 12 11 15 15 C 1.52997 * 111.04323 * 153.39523 * 13 12 11 16 16 C 1.53002 * 109.46869 * 72.78291 * 15 13 12 17 17 N 1.46497 * 109.46983 * 180.02562 * 16 15 13 18 18 C 1.36940 * 120.00183 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99844 * 359.97438 * 18 17 16 20 20 C 1.38812 * 120.00083 * 179.97438 * 18 17 16 21 21 N 1.31610 * 120.00157 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99646 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46984 * 90.00178 * 22 20 18 24 24 H 1.48503 * 109.46821 * 210.00163 * 22 20 18 25 25 H 1.48495 * 109.47364 * 329.99960 * 22 20 18 26 26 C 1.47424 * 125.64899 * 179.97438 * 10 8 7 27 27 C 1.53117 * 109.16363 * 57.65342 * 5 4 3 28 28 C 1.46843 * 111.00150 * 124.21116 * 2 1 3 29 29 H 1.09008 * 109.47023 * 59.99607 * 1 2 3 30 30 H 1.08992 * 109.47018 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47122 * 300.00289 * 1 2 3 32 32 H 1.09008 * 109.46282 * 65.82905 * 3 2 1 33 33 H 1.08993 * 109.45760 * 305.85296 * 3 2 1 34 34 H 1.09005 * 109.49929 * 180.87896 * 4 3 2 35 35 H 1.09001 * 109.49977 * 60.76950 * 4 3 2 36 36 H 1.09004 * 109.52260 * 297.68679 * 5 4 3 37 37 H 1.09000 * 109.46890 * 59.99811 * 7 6 5 38 38 H 1.09000 * 109.47141 * 299.99454 * 7 6 5 39 39 H 1.09000 * 109.88271 * 298.39176 * 11 10 8 40 40 H 1.09002 * 109.88395 * 59.55797 * 11 10 8 41 41 H 1.09001 * 110.85313 * 219.67261 * 12 11 10 42 42 H 1.09006 * 110.67247 * 96.51981 * 12 11 10 43 43 H 1.08994 * 109.47484 * 192.78663 * 15 13 12 44 44 H 1.09000 * 109.46686 * 312.79001 * 15 13 12 45 45 H 1.08994 * 109.47371 * 300.00441 * 16 15 13 46 46 H 1.09000 * 109.46784 * 60.00286 * 16 15 13 47 47 H 0.97000 * 120.00505 * 359.97438 * 17 16 15 48 48 H 0.97000 * 120.00152 * 179.97438 * 21 20 18 49 49 H 1.09001 * 110.36250 * 322.93302 * 26 10 8 50 50 H 1.08997 * 110.36565 * 85.25357 * 26 10 8 51 51 H 1.09002 * 109.50200 * 62.28060 * 27 5 4 52 52 H 1.08997 * 109.50661 * 182.40565 * 27 5 4 53 53 H 1.08999 * 109.46563 * 294.17798 * 28 2 1 54 54 H 1.08997 * 109.46052 * 54.15575 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5182 1.3342 -0.1467 5 6 4.1189 0.5369 1.0143 6 8 5.5360 0.4511 0.8520 7 6 6.2580 0.3673 2.0824 8 6 7.7345 0.2808 1.7934 9 8 8.1296 0.2895 0.6468 10 7 8.6160 0.1937 2.8092 11 6 8.2763 0.1793 4.2396 12 6 9.5985 0.0385 5.0231 13 6 10.5616 -0.5792 3.9752 14 1 10.4366 -1.6607 3.9191 15 6 12.0152 -0.2133 4.2821 16 6 12.4922 -1.0011 5.5039 17 7 13.8838 -0.6503 5.7982 18 6 14.5284 -1.2348 6.8557 19 1 14.0106 -1.9540 7.4730 20 6 15.8471 -0.9027 7.1342 21 7 16.4778 -0.0259 6.3822 22 14 16.7260 -1.6996 8.5771 23 1 17.3960 -2.9444 8.1224 24 1 17.7411 -0.7603 9.1182 25 1 15.7398 -2.0272 9.6378 26 6 10.0809 0.1030 2.6703 27 6 3.5182 -0.8715 1.0208 28 6 1.9953 -0.7708 1.1337 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7325 1.8609 0.9377 33 1 1.5634 1.9256 -0.8330 34 1 3.9099 2.3513 -0.1310 35 1 3.7814 0.8569 -1.0906 36 1 3.8897 1.0360 1.9560 37 1 5.9423 -0.5214 2.6290 38 1 6.0563 1.2541 2.6831 39 1 7.7791 1.1102 4.5120 40 1 7.6263 -0.6681 4.4577 41 1 9.4753 -0.6303 5.8750 42 1 9.9582 1.0143 5.3494 43 1 12.6408 -0.4594 3.4242 44 1 12.0851 0.8547 4.4885 45 1 11.8666 -0.7550 6.3618 46 1 12.4222 -2.0691 5.2976 47 1 14.3490 -0.0046 5.2436 48 1 17.3992 0.2064 6.5771 49 1 10.3428 -0.5059 1.8050 50 1 10.5157 1.0984 2.5805 51 1 3.7814 -1.3836 0.0952 52 1 3.9100 -1.4303 1.8707 53 1 1.7325 -0.2709 2.0660 54 1 1.5636 -1.7716 1.1240 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717104840.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:38 Heat of formation + Delta-G solvation = -94.065068 kcal Electronic energy + Delta-G solvation = -29026.762797 eV Core-core repulsion = 24997.440233 eV Total energy + Delta-G solvation = -4029.322564 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.26256 -40.32737 -39.01428 -37.93008 -36.81800 -34.58510 -33.53652 -32.67490 -31.90354 -30.59567 -29.96577 -28.14599 -26.91398 -25.56825 -24.21527 -23.94623 -23.44774 -23.04033 -21.26646 -21.02065 -20.30732 -19.12431 -18.45871 -17.79538 -17.33060 -17.05992 -16.66991 -16.41489 -16.19650 -16.04237 -15.71832 -15.52142 -15.36867 -15.21057 -14.96078 -14.59613 -14.36738 -14.16055 -14.07403 -13.76114 -13.65783 -13.41412 -13.27813 -13.08735 -13.03130 -12.83760 -12.75585 -12.59188 -12.34672 -12.19397 -12.16969 -12.12316 -11.95649 -11.91185 -11.62663 -11.55077 -11.49353 -11.48674 -10.92226 -10.89921 -10.53512 -9.72580 -9.29846 -8.98372 -7.94226 -5.23202 1.48455 1.49416 1.50478 1.58804 1.61837 2.57300 2.77851 2.97622 3.36996 3.40127 3.60558 3.69278 3.77357 3.79194 3.84320 4.07695 4.08823 4.15294 4.17661 4.22135 4.30240 4.33791 4.35003 4.37305 4.47686 4.53606 4.56113 4.60954 4.62828 4.66929 4.72259 4.79426 4.85150 4.85775 4.88662 4.93138 4.98598 4.99521 5.04255 5.09409 5.18535 5.22037 5.26711 5.31597 5.40541 5.47475 5.51406 6.09853 6.10138 6.12370 6.28460 6.45288 7.06420 7.34315 8.11934 8.33499 9.29632 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.039798 B = 0.001415 C = 0.001387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.391315 B =19787.740453 C =20183.044741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.566 5.566 3 C 0.063 3.937 4 C -0.114 4.114 5 C 0.086 3.914 6 O -0.389 6.389 7 C 0.055 3.945 8 C 0.520 3.480 9 O -0.580 6.580 10 N -0.616 5.616 11 C 0.097 3.903 12 C -0.124 4.124 13 C -0.084 4.084 14 H 0.089 0.911 15 C -0.103 4.103 16 C 0.154 3.846 17 N -0.751 5.751 18 C -0.246 4.246 19 H 0.078 0.922 20 C -0.077 4.077 21 N -0.971 5.971 22 Si 0.974 3.026 23 H -0.288 1.288 24 H -0.296 1.296 25 H -0.267 1.267 26 C 0.111 3.889 27 C -0.137 4.137 28 C 0.061 3.939 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.079 0.921 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.031 0.969 46 H 0.017 0.983 47 H 0.372 0.628 48 H 0.251 0.749 49 H 0.061 0.939 50 H 0.067 0.933 51 H 0.059 0.941 52 H 0.081 0.919 53 H 0.046 0.954 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.101 2.124 -7.336 37.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.291 5.291 3 C -0.064 4.064 4 C -0.152 4.152 5 C 0.029 3.971 6 O -0.308 6.308 7 C -0.024 4.024 8 C 0.309 3.691 9 O -0.460 6.460 10 N -0.351 5.351 11 C -0.025 4.025 12 C -0.162 4.162 13 C -0.104 4.104 14 H 0.107 0.893 15 C -0.141 4.141 16 C 0.028 3.972 17 N -0.393 5.393 18 C -0.378 4.378 19 H 0.096 0.904 20 C -0.269 4.269 21 N -0.622 5.622 22 Si 0.803 3.197 23 H -0.215 1.215 24 H -0.222 1.222 25 H -0.191 1.191 26 C -0.012 4.012 27 C -0.176 4.176 28 C -0.067 4.067 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.097 0.903 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.049 0.951 46 H 0.035 0.965 47 H 0.204 0.796 48 H 0.060 0.940 49 H 0.079 0.921 50 H 0.085 0.915 51 H 0.078 0.922 52 H 0.100 0.900 53 H 0.064 0.936 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -36.754 1.794 -8.455 37.756 hybrid contribution 1.069 0.236 1.066 1.528 sum -35.685 2.030 -7.389 36.498 Atomic orbital electron populations 1.22376 0.85855 1.02732 1.01248 1.61920 1.08926 1.14152 1.44123 1.22039 0.93502 0.89208 1.01691 1.21642 0.94821 1.00425 0.98342 1.22370 0.78949 0.96194 0.99575 1.88041 1.18963 1.94961 1.28825 1.22307 0.87214 1.04868 0.88047 1.20643 0.88872 0.75868 0.83711 1.90716 1.80989 1.51578 1.22689 1.48546 1.06756 1.72232 1.07590 1.22389 0.98407 1.04008 0.77656 1.22757 0.93108 1.02556 0.97771 1.22161 0.93795 1.00586 0.93851 0.89294 1.21500 0.94942 1.00228 0.97445 1.20801 0.84571 0.96306 0.95542 1.42650 1.10554 1.51369 1.34777 1.19678 0.94752 1.18029 1.05342 0.90431 1.25591 0.98041 1.00841 1.02440 1.69819 1.11654 1.38132 1.42632 0.85132 0.78201 0.77171 0.79217 1.21526 1.22216 1.19126 1.22232 0.79758 1.00680 0.98531 1.22084 0.95347 0.97139 1.02981 1.22046 0.93999 0.99038 0.91611 0.90859 0.90815 0.94943 0.93615 0.89454 0.90403 0.92150 0.90076 0.87602 0.87410 0.88777 0.88695 0.88248 0.90264 0.92680 0.91704 0.95071 0.96496 0.79623 0.94043 0.92064 0.91495 0.92240 0.90003 0.93623 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.59 127.69 1.22 1.42 16 2 N -0.57 -6.62 4.91 -922.57 -4.53 -11.15 16 3 C 0.06 0.66 5.46 86.33 0.47 1.14 16 4 C -0.11 -1.62 5.75 30.65 0.18 -1.44 16 5 C 0.09 1.20 2.68 30.67 0.08 1.29 16 6 O -0.39 -8.27 9.53 -129.94 -1.24 -9.50 16 7 C 0.05 0.86 5.42 71.24 0.39 1.25 16 8 C 0.52 12.89 7.93 87.66 0.69 13.58 16 9 O -0.58 -20.91 16.76 16.01 0.27 -20.64 16 10 N -0.62 -12.82 3.33 -811.80 -2.70 -15.52 16 11 C 0.10 1.21 6.49 86.73 0.56 1.78 16 12 C -0.12 -2.03 5.90 31.78 0.19 -1.85 16 13 C -0.08 -1.87 3.00 -9.41 -0.03 -1.90 16 14 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 15 C -0.10 -3.06 4.84 30.59 0.15 -2.91 16 16 C 0.15 5.81 6.16 86.38 0.53 6.34 16 17 N -0.75 -38.08 5.60 -343.46 -1.92 -40.00 16 18 C -0.25 -13.72 9.99 84.03 0.84 -12.88 16 19 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 20 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 21 N -0.97 -59.85 13.06 21.65 0.28 -59.57 16 22 Si 0.97 45.87 29.55 68.60 2.03 47.89 16 23 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 24 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 26 C 0.11 2.67 6.37 86.85 0.55 3.22 16 27 C -0.14 -1.74 5.72 30.65 0.18 -1.56 16 28 C 0.06 0.60 5.46 86.33 0.47 1.08 16 29 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.07 0.50 8.09 -2.39 -0.02 0.48 16 31 H 0.03 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.05 0.38 8.14 -2.38 -0.02 0.36 16 33 H 0.09 0.80 8.12 -2.39 -0.02 0.78 16 34 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.08 0.75 7.79 -2.38 -0.02 0.74 16 37 H 0.11 1.05 7.96 -2.39 -0.02 1.03 16 38 H 0.11 1.03 8.09 -2.39 -0.02 1.02 16 39 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.08 1.37 7.91 -2.38 -0.02 1.35 16 43 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.06 1.95 7.97 -2.39 -0.02 1.93 16 45 H 0.03 1.12 7.75 -2.39 -0.02 1.10 16 46 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.37 20.21 7.67 -92.71 -0.71 19.50 16 48 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 49 H 0.06 1.69 8.04 -2.39 -0.02 1.67 16 50 H 0.07 1.67 8.04 -2.39 -0.02 1.65 16 51 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 52 H 0.08 0.80 7.96 -2.39 -0.02 0.78 16 53 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 54 H 0.08 0.74 8.09 -2.39 -0.02 0.72 16 Total: -1.00 -77.42 425.79 -0.73 -78.15 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.14 Total: 25.78 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: 6.95 Total: 4.57 kcal Atomic # 7 Polarization: -117.37 SS G_CDS: -8.87 Total: -126.24 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.97 Total: -30.15 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Total: -77.42 -0.73 -78.15 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717104840.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.914 kcal (2) G-P(sol) polarization free energy of solvation -77.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds