Wall clock time and date at job start Sat Apr 11 2020 05:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36929 * 120.00387 * 2 1 4 4 H 1.07994 * 120.00394 * 202.34783 * 3 2 1 5 5 C 1.38816 * 119.99926 * 22.34341 * 3 2 1 6 6 N 1.31620 * 119.99994 * 11.35278 * 5 3 2 7 7 Si 1.86801 * 120.00145 * 191.35667 * 5 3 2 8 8 H 1.48495 * 109.47144 * 0.02562 * 7 5 3 9 9 H 1.48505 * 109.47064 * 120.00074 * 7 5 3 10 10 H 1.48503 * 109.46880 * 239.99805 * 7 5 3 11 11 C 1.46504 * 119.99546 * 180.02562 * 2 1 3 12 12 C 1.53006 * 109.46510 * 269.99448 * 11 2 1 13 13 C 1.53008 * 109.46819 * 180.02562 * 12 11 2 14 14 N 1.46492 * 109.47069 * 180.02562 * 13 12 11 15 15 C 1.46506 * 119.99949 * 270.00500 * 14 13 12 16 16 C 1.34774 * 120.00013 * 90.00339 * 14 13 12 17 17 O 1.21276 * 120.00179 * 359.97438 * 16 14 13 18 18 C 1.50705 * 120.00229 * 180.02562 * 16 14 13 19 19 C 1.52997 * 109.47296 * 179.97438 * 18 16 14 20 20 C 1.50695 * 109.46961 * 179.97438 * 19 18 16 21 21 O 1.21281 * 120.00326 * 0.02562 * 20 19 18 22 22 N 1.34782 * 119.99708 * 179.97438 * 20 19 18 23 23 C 1.46502 * 119.99844 * 179.97438 * 22 20 19 24 24 C 1.54265 * 110.03820 * 272.91619 * 23 22 20 25 25 C 1.54959 * 104.16066 * 217.13816 * 24 23 22 26 26 C 1.54896 * 102.77827 * 37.88460 * 25 24 23 27 27 C 1.53872 * 110.03196 * 155.69581 * 23 22 20 28 28 H 1.08999 * 109.46727 * 274.20709 * 1 2 3 29 29 H 1.08995 * 109.46631 * 34.20811 * 1 2 3 30 30 H 1.09003 * 109.47250 * 154.21012 * 1 2 3 31 31 H 0.96993 * 120.00119 * 179.97438 * 6 5 3 32 32 H 1.09002 * 109.46996 * 150.00199 * 11 2 1 33 33 H 1.08992 * 109.47254 * 29.99769 * 11 2 1 34 34 H 1.09002 * 109.46879 * 60.00678 * 12 11 2 35 35 H 1.08992 * 109.47624 * 300.00094 * 12 11 2 36 36 H 1.09005 * 109.46659 * 60.00155 * 13 12 11 37 37 H 1.08992 * 109.47045 * 300.00381 * 13 12 11 38 38 H 1.09004 * 109.46646 * 269.99632 * 15 14 13 39 39 H 1.08995 * 109.47528 * 29.99905 * 15 14 13 40 40 H 1.09004 * 109.47127 * 150.00394 * 15 14 13 41 41 H 1.08999 * 109.46975 * 59.99263 * 18 16 14 42 42 H 1.09005 * 109.46733 * 300.00216 * 18 16 14 43 43 H 1.09003 * 109.47015 * 60.00229 * 19 18 16 44 44 H 1.09000 * 109.47100 * 299.99759 * 19 18 16 45 45 H 0.96989 * 120.00185 * 0.28627 * 22 20 19 46 46 H 1.09007 * 110.01554 * 34.30916 * 23 22 20 47 47 H 1.09005 * 110.48060 * 335.78268 * 24 23 22 48 48 H 1.08993 * 110.48945 * 98.42255 * 24 23 22 49 49 H 1.09004 * 110.72147 * 279.57091 * 25 24 23 50 50 H 1.09000 * 110.92779 * 156.29377 * 25 24 23 51 51 H 1.09001 * 110.48263 * 203.40727 * 26 25 24 52 52 H 1.08998 * 110.59400 * 80.82172 * 26 25 24 53 53 H 1.09005 * 110.03557 * 238.57445 * 27 23 22 54 54 H 1.08999 * 110.03160 * 0.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1689 1.2209 -0.3556 5 6 1.5339 2.3429 0.4570 6 7 0.3843 2.2691 1.0936 7 14 2.3367 4.0047 0.1684 8 1 3.6137 3.8167 -0.5657 9 1 1.4267 4.8615 -0.6336 10 1 2.6074 4.6571 1.4747 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4418 13 6 3.2180 -3.0358 1.4413 14 7 3.4616 -3.4595 2.8223 15 6 4.6820 -3.0365 3.5138 16 6 2.5632 -4.2384 3.4567 17 8 1.5527 -4.5881 2.8845 18 6 2.8135 -4.6738 4.8776 19 6 1.6491 -5.5426 5.3575 20 6 1.8998 -5.9785 6.7780 21 8 2.9101 -5.6283 7.3505 22 7 1.0008 -6.7567 7.4128 23 6 1.2448 -7.1809 8.7936 24 6 2.0783 -8.4789 8.8084 25 6 1.4963 -9.2897 9.9938 26 6 -0.0207 -8.9906 9.9014 27 6 -0.0890 -7.5058 9.4887 28 1 -0.3633 0.0754 1.0249 29 1 -0.3632 0.8499 -0.5777 30 1 -0.3634 -0.9253 -0.4471 31 1 -0.0458 3.0775 1.4133 32 1 3.1499 -1.1383 -0.5143 33 1 1.6084 -2.0282 -0.5147 34 1 1.5000 -1.8415 1.9556 35 1 3.0416 -0.9516 1.9559 36 1 4.1704 -2.9048 0.9276 37 1 2.6293 -3.7953 0.9271 38 1 5.4696 -3.7704 3.3424 39 1 4.9993 -2.0667 3.1305 40 1 4.4851 -2.9579 4.5830 41 1 2.8986 -3.7953 5.5172 42 1 3.7390 -5.2479 4.9239 43 1 1.5637 -6.4212 4.7179 44 1 0.7240 -4.9681 5.3112 45 1 0.1946 -7.0395 6.9538 46 1 1.7680 -6.3950 9.3385 47 1 1.9504 -9.0249 7.8737 48 1 3.1311 -8.2543 8.9791 49 1 1.9031 -8.9345 10.9406 50 1 1.6882 -10.3553 9.8681 51 1 -0.4986 -9.1398 10.8697 52 1 -0.4900 -9.6190 9.1445 53 1 -0.2128 -6.8782 10.3713 54 1 -0.9178 -7.3483 8.7984 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717213675.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:56 Heat of formation + Delta-G solvation = -91.727946 kcal Electronic energy + Delta-G solvation = -29271.845527 eV Core-core repulsion = 25242.624308 eV Total energy + Delta-G solvation = -4029.221219 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.30844 -40.65868 -38.69671 -37.93581 -36.68909 -34.68322 -34.33531 -33.61174 -31.91636 -29.65844 -29.00796 -28.13796 -27.81893 -27.22086 -25.56511 -23.59844 -21.98844 -21.73000 -21.33403 -21.27375 -20.00990 -18.76788 -18.66793 -17.63494 -17.26294 -17.13517 -17.05854 -16.58815 -16.22440 -16.05287 -15.79546 -15.34772 -15.30491 -14.88505 -14.74757 -14.40339 -14.26841 -14.23376 -14.05854 -13.67005 -13.37102 -13.20796 -13.12034 -13.05724 -12.81525 -12.75415 -12.53412 -12.47796 -12.42294 -12.25878 -12.17857 -12.03124 -12.00688 -11.96154 -11.86210 -11.76478 -11.49166 -11.39418 -10.90636 -10.85566 -10.65748 -10.06082 -9.67176 -8.78592 -7.82541 -5.30882 1.45693 1.46695 1.57626 1.59738 1.61264 1.94051 2.33251 2.51373 3.31883 3.46492 3.60443 3.69880 3.70345 3.82750 3.97475 4.05508 4.06981 4.16265 4.30454 4.39413 4.45986 4.52246 4.54254 4.56489 4.59982 4.62332 4.64193 4.70515 4.76746 4.80358 4.82488 4.86467 4.88514 4.91147 4.94038 4.96832 5.04035 5.15941 5.22444 5.27252 5.27416 5.28974 5.44289 5.44490 5.60517 5.60828 5.64343 5.69667 6.33381 6.40907 6.52405 7.14437 7.16192 7.22976 7.87103 8.32431 9.22169 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018415 B = 0.001719 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.156704 B =16282.475178 C =16660.109256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.622 5.622 3 C -0.258 4.258 4 H 0.077 0.923 5 C -0.060 4.060 6 N -0.944 5.944 7 Si 0.972 3.028 8 H -0.262 1.262 9 H -0.292 1.292 10 H -0.294 1.294 11 C 0.152 3.848 12 C -0.130 4.130 13 C 0.125 3.875 14 N -0.617 5.617 15 C 0.071 3.929 16 C 0.505 3.495 17 O -0.581 6.581 18 C -0.114 4.114 19 C -0.120 4.120 20 C 0.517 3.483 21 O -0.578 6.578 22 N -0.715 5.715 23 C 0.135 3.865 24 C -0.134 4.134 25 C -0.122 4.122 26 C -0.120 4.120 27 C -0.128 4.128 28 H -0.004 1.004 29 H 0.019 0.981 30 H 0.025 0.975 31 H 0.246 0.754 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.020 0.980 35 H 0.042 0.958 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.100 0.900 45 H 0.414 0.586 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.054 0.946 49 H 0.069 0.931 50 H 0.076 0.924 51 H 0.078 0.922 52 H 0.074 0.926 53 H 0.077 0.923 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.405 -25.387 16.082 30.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.345 5.345 3 C -0.388 4.388 4 H 0.095 0.905 5 C -0.255 4.255 6 N -0.592 5.592 7 Si 0.800 3.200 8 H -0.186 1.186 9 H -0.219 1.219 10 H -0.221 1.221 11 C 0.025 3.975 12 C -0.171 4.171 13 C 0.002 3.998 14 N -0.349 5.349 15 C -0.071 4.071 16 C 0.295 3.705 17 O -0.462 6.462 18 C -0.154 4.154 19 C -0.160 4.160 20 C 0.305 3.695 21 O -0.458 6.458 22 N -0.367 5.367 23 C 0.030 3.970 24 C -0.173 4.173 25 C -0.160 4.160 26 C -0.158 4.158 27 C -0.166 4.166 28 H 0.014 0.986 29 H 0.038 0.962 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.039 0.961 35 H 0.060 0.940 36 H 0.120 0.880 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.118 0.882 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.118 0.882 45 H 0.251 0.749 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.073 0.927 49 H 0.088 0.912 50 H 0.095 0.905 51 H 0.096 0.904 52 H 0.092 0.908 53 H 0.096 0.904 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.516 -25.189 16.224 30.300 hybrid contribution -0.331 1.340 -0.131 1.386 sum 4.184 -23.849 16.094 29.074 Atomic orbital electron populations 1.20495 0.83164 0.95754 0.97137 1.44260 1.02069 1.02081 1.86064 1.19645 0.98215 0.86416 1.34501 0.90541 1.25872 0.98520 1.02134 0.98926 1.70273 1.19518 1.27301 1.42097 0.85128 0.78188 0.79746 0.76949 1.18570 1.21944 1.22103 1.20933 0.96130 0.86539 0.93864 1.22302 0.98417 0.96415 0.99987 1.21436 1.01137 0.95048 0.82207 1.48053 1.22276 1.49813 1.14711 1.22057 0.85516 1.01470 0.98052 1.21142 0.82338 0.77688 0.89337 1.90670 1.28458 1.57959 1.69101 1.21338 1.00945 1.01904 0.91174 1.21335 1.00224 1.02188 0.92299 1.20820 0.82706 0.77318 0.88656 1.90682 1.28874 1.57397 1.68833 1.46160 1.24327 1.51527 1.14726 1.21711 0.97139 0.96380 0.81755 1.22766 0.99050 0.95645 0.99795 1.22491 0.95657 1.00179 0.97660 1.22356 0.96179 0.94965 1.02307 1.22431 0.95506 0.97853 1.00842 0.98569 0.96182 0.95645 0.94450 0.92163 0.92963 0.96080 0.93951 0.88010 0.90901 0.89983 0.90669 0.90008 0.88212 0.86890 0.87079 0.88180 0.74872 0.91322 0.91129 0.92691 0.91202 0.90501 0.90376 0.90774 0.90449 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.56 9.01 127.77 1.15 10.71 16 2 N -0.62 -32.59 2.93 -726.92 -2.13 -34.71 16 3 C -0.26 -14.41 9.67 84.04 0.81 -13.60 16 4 H 0.08 4.07 7.84 -2.91 -0.02 4.05 16 5 C -0.06 -3.47 5.13 84.86 0.44 -3.03 16 6 N -0.94 -58.03 10.59 21.65 0.23 -57.80 16 7 Si 0.97 45.82 29.57 68.60 2.03 47.85 16 8 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 9 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 10 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 11 C 0.15 6.27 5.71 86.38 0.49 6.76 16 12 C -0.13 -5.05 5.86 30.60 0.18 -4.87 16 13 C 0.12 3.65 5.41 86.38 0.47 4.12 16 14 N -0.62 -16.33 2.87 -846.75 -2.43 -18.76 16 15 C 0.07 1.34 10.24 127.77 1.31 2.64 16 16 C 0.51 14.30 7.67 87.66 0.67 14.98 16 17 O -0.58 -20.68 15.56 -3.02 -0.05 -20.72 16 18 C -0.11 -2.43 3.54 29.85 0.11 -2.32 16 19 C -0.12 -2.30 4.99 29.85 0.15 -2.15 16 20 C 0.52 10.35 7.82 87.65 0.69 11.04 16 21 O -0.58 -15.61 15.65 -3.03 -0.05 -15.66 16 22 N -0.72 -10.24 5.04 -439.09 -2.21 -12.46 16 23 C 0.13 1.90 3.23 45.71 0.15 2.04 16 24 C -0.13 -1.76 6.54 31.69 0.21 -1.55 16 25 C -0.12 -1.10 6.91 31.91 0.22 -0.88 16 26 C -0.12 -0.87 6.83 31.67 0.22 -0.65 16 27 C -0.13 -1.17 6.57 31.32 0.21 -0.96 16 28 H 0.00 -0.24 7.42 -2.39 -0.02 -0.25 16 29 H 0.02 1.12 7.19 -2.39 -0.02 1.10 16 30 H 0.03 1.17 7.84 -2.39 -0.02 1.15 16 31 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 32 H 0.06 2.27 8.03 -2.39 -0.02 2.26 16 33 H 0.05 2.00 7.86 -2.39 -0.02 1.98 16 34 H 0.02 0.94 8.14 -2.39 -0.02 0.93 16 35 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.10 2.39 8.07 -2.38 -0.02 2.37 16 37 H 0.07 2.24 7.42 -2.39 -0.02 2.23 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 1.45 8.07 -2.39 -0.02 1.43 16 40 H 0.08 1.39 6.44 -2.38 -0.02 1.37 16 41 H 0.10 2.17 7.36 -2.39 -0.02 2.15 16 42 H 0.11 2.09 8.06 -2.38 -0.02 2.07 16 43 H 0.11 1.90 8.10 -2.39 -0.02 1.88 16 44 H 0.10 1.99 8.10 -2.39 -0.02 1.97 16 45 H 0.41 3.80 8.31 -92.72 -0.77 3.03 16 46 H 0.07 1.29 7.59 -2.38 -0.02 1.27 16 47 H 0.07 0.92 8.05 -2.38 -0.02 0.90 16 48 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 49 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 50 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 51 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 52 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 53 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 54 H 0.08 0.60 7.61 -2.39 -0.02 0.59 16 Total: -1.00 -77.17 429.63 2.94 -74.24 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.09 Total: 15.75 kcal Atomic # 6 Polarization: 14.82 SS G_CDS: 7.46 Total: 22.27 kcal Atomic # 7 Polarization: -117.19 SS G_CDS: -6.54 Total: -123.73 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -0.09 Total: -36.38 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -77.17 2.94 -74.24 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717213675.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.492 kcal (2) G-P(sol) polarization free energy of solvation -77.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds