Wall clock time and date at job start Sat Apr 11 2020 05:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21285 * 119.99979 * 2 1 4 4 N 1.34780 * 120.00053 * 179.97438 * 2 1 3 5 5 C 1.46501 * 119.99724 * 179.97438 * 4 2 1 6 6 C 1.50701 * 109.46752 * 180.02562 * 5 4 2 7 7 O 1.21275 * 120.00319 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99437 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99448 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47024 * 179.97438 * 9 8 6 11 11 C 1.52995 * 109.47085 * 180.02562 * 10 9 8 12 12 C 1.53005 * 109.46981 * 179.97438 * 11 10 9 13 13 C 1.53007 * 109.46828 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.46932 * 180.02562 * 13 12 11 15 15 C 1.53352 * 109.41800 * 295.12870 * 14 13 12 16 16 C 1.53190 * 109.15070 * 178.67720 * 15 14 13 17 17 N 1.46925 * 108.89356 * 54.57285 * 16 15 14 18 18 C 1.36935 * 120.62758 * 126.30089 * 17 16 15 19 19 H 1.08001 * 120.00088 * 332.62829 * 18 17 16 20 20 C 1.38817 * 119.99782 * 152.62208 * 18 17 16 21 21 N 1.31618 * 119.99923 * 159.36242 * 20 18 17 22 22 Si 1.86801 * 120.00195 * 339.36341 * 20 18 17 23 23 H 1.48501 * 109.47054 * 92.89675 * 22 20 18 24 24 H 1.48497 * 109.47324 * 212.90179 * 22 20 18 25 25 H 1.48501 * 109.46722 * 332.89954 * 22 20 18 26 26 C 1.46926 * 118.73822 * 306.31916 * 17 16 15 27 27 C 1.53037 * 109.46053 * 174.99715 * 14 13 12 28 28 H 1.09002 * 109.47050 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47059 * 300.00554 * 1 2 3 30 30 H 1.08998 * 109.47100 * 60.00543 * 1 2 3 31 31 H 0.96994 * 119.99583 * 0.02562 * 4 2 1 32 32 H 1.09001 * 109.46524 * 60.00937 * 5 4 2 33 33 H 1.08999 * 109.47445 * 300.01018 * 5 4 2 34 34 H 0.96999 * 120.00529 * 0.02562 * 8 6 5 35 35 H 1.08996 * 109.47307 * 59.99989 * 9 8 6 36 36 H 1.08999 * 109.47654 * 300.00028 * 9 8 6 37 37 H 1.08996 * 109.47061 * 59.99871 * 10 9 8 38 38 H 1.08998 * 109.46626 * 300.00057 * 10 9 8 39 39 H 1.09010 * 109.47168 * 60.00223 * 11 10 9 40 40 H 1.08999 * 109.47619 * 300.00077 * 11 10 9 41 41 H 1.09000 * 109.46907 * 60.00826 * 12 11 10 42 42 H 1.08996 * 109.47369 * 299.99858 * 12 11 10 43 43 H 1.08996 * 109.46988 * 60.00148 * 13 12 11 44 44 H 1.08996 * 109.46898 * 299.99985 * 13 12 11 45 45 H 1.09008 * 109.45887 * 55.02514 * 14 13 12 46 46 H 1.09004 * 109.68561 * 58.70472 * 15 14 13 47 47 H 1.09004 * 109.47287 * 298.51133 * 15 14 13 48 48 H 1.09004 * 109.58215 * 294.71811 * 16 15 14 49 49 H 1.08997 * 109.58828 * 174.43980 * 16 15 14 50 50 H 0.96999 * 119.99917 * 180.02562 * 21 20 18 51 51 H 1.09002 * 109.58248 * 173.39705 * 26 17 16 52 52 H 1.08994 * 109.58922 * 293.68210 * 26 17 16 53 53 H 1.09003 * 109.49698 * 61.43697 * 27 14 13 54 54 H 1.08994 * 109.52761 * 301.35110 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0000 6 6 4.1483 -2.5880 0.0001 7 8 3.3602 -3.5098 0.0011 8 7 5.4734 -2.8341 0.0001 9 6 5.9617 -4.2154 0.0008 10 6 7.4917 -4.2154 0.0001 11 6 8.0017 -5.6578 0.0002 12 6 9.5318 -5.6578 -0.0012 13 6 10.0418 -7.1003 -0.0018 14 6 11.5718 -7.1003 -0.0025 15 6 12.0810 -6.4859 -1.3120 16 6 13.6125 -6.4586 -1.2921 17 7 14.1091 -7.8157 -1.0272 18 6 15.0166 -8.4030 -1.8679 19 1 15.0521 -8.1173 -2.9088 20 6 15.8910 -9.3655 -1.3821 21 7 16.4668 -10.2100 -2.2113 22 14 16.2506 -9.4621 0.4484 23 1 15.3216 -10.4302 1.0849 24 1 17.6510 -9.9108 0.6549 25 1 16.0648 -8.1220 1.0607 26 6 13.6133 -8.5309 0.1566 27 6 12.0817 -8.5378 0.1228 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.6959 -2.0072 0.0005 32 1 4.0095 -0.6528 0.8896 33 1 4.0089 -0.6537 -0.8904 34 1 6.1037 -2.0969 0.0005 35 1 5.5984 -4.7297 -0.8888 36 1 5.5985 -4.7288 0.8911 37 1 7.8554 -3.7009 0.8895 38 1 7.8545 -3.7021 -0.8904 39 1 7.6380 -6.1719 -0.8896 40 1 7.6388 -6.1715 0.8904 41 1 9.8958 -5.1437 0.8884 42 1 9.8943 -5.1443 -0.8916 43 1 9.6776 -7.6140 -0.8914 44 1 9.6792 -7.6142 0.8885 45 1 11.9353 -6.5114 0.8397 46 1 11.7002 -5.4695 -1.4131 47 1 11.7388 -7.0885 -2.1534 48 1 13.9558 -5.7842 -0.5075 49 1 13.9844 -6.1152 -2.2575 50 1 17.0776 -10.8828 -1.8718 51 1 13.9836 -9.5560 0.1458 52 1 13.9587 -8.0270 1.0592 53 1 11.7393 -9.1211 -0.7320 54 1 11.6996 -8.9811 1.0423 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717242210.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:01 Heat of formation + Delta-G solvation = -111.767607 kcal Electronic energy + Delta-G solvation = -28206.286254 eV Core-core repulsion = 24176.196050 eV Total energy + Delta-G solvation = -4030.090204 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.25716 -40.17615 -39.76835 -37.52238 -36.21299 -35.50771 -34.63585 -33.30619 -31.91800 -31.59359 -30.75470 -28.58722 -27.25423 -25.48384 -24.49887 -23.31821 -22.29150 -21.93427 -21.65885 -21.37836 -20.66685 -18.75408 -18.71583 -17.72122 -17.25045 -17.22349 -17.06466 -16.68198 -16.27466 -16.03323 -15.89405 -15.37089 -15.24242 -15.22814 -14.88447 -14.76885 -14.43697 -14.24631 -14.17533 -13.85329 -13.75263 -13.55036 -13.41004 -13.31008 -12.97507 -12.90686 -12.75124 -12.57185 -12.27954 -12.17362 -12.02035 -11.90875 -11.82162 -11.57693 -11.40427 -11.31677 -11.20168 -11.11206 -10.98044 -10.92712 -10.57258 -10.34142 -10.14209 -8.90873 -8.17787 -5.48284 1.28250 1.39160 1.41429 1.48920 1.57643 1.78384 2.40835 2.46687 3.05659 3.38639 3.56376 3.73672 3.93369 3.96210 3.99544 4.08270 4.13095 4.26552 4.27435 4.33171 4.41540 4.42961 4.50986 4.53573 4.59406 4.66492 4.68576 4.71943 4.74796 4.82328 4.93336 4.97930 5.00598 5.03425 5.05457 5.05670 5.12982 5.24645 5.26582 5.28956 5.32594 5.33084 5.37769 5.44254 5.53428 5.62150 5.71764 5.87514 6.11989 6.38957 6.44886 6.93348 7.05820 7.14158 7.63986 8.04884 9.02517 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.042779 B = 0.001234 C = 0.001224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.366664 B =22681.373087 C =22872.294287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.509 3.491 3 O -0.596 6.596 4 N -0.717 5.717 5 C 0.098 3.902 6 C 0.510 3.490 7 O -0.575 6.575 8 N -0.712 5.712 9 C 0.120 3.880 10 C -0.121 4.121 11 C -0.114 4.114 12 C -0.114 4.114 13 C -0.107 4.107 14 C -0.075 4.075 15 C -0.118 4.118 16 C 0.139 3.861 17 N -0.622 5.622 18 C -0.251 4.251 19 H 0.049 0.951 20 C -0.036 4.036 21 N -0.959 5.959 22 Si 0.949 3.051 23 H -0.275 1.275 24 H -0.310 1.310 25 H -0.262 1.262 26 C 0.118 3.882 27 C -0.123 4.123 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.417 0.583 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.419 0.581 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.044 0.956 48 H 0.033 0.967 49 H 0.048 0.952 50 H 0.261 0.739 51 H 0.043 0.957 52 H 0.031 0.969 53 H 0.047 0.953 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.799 19.341 8.531 38.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.298 3.702 3 O -0.477 6.477 4 N -0.373 5.373 5 C -0.029 4.029 6 C 0.296 3.704 7 O -0.455 6.455 8 N -0.365 5.365 9 C -0.003 4.003 10 C -0.159 4.159 11 C -0.152 4.152 12 C -0.151 4.151 13 C -0.144 4.144 14 C -0.094 4.094 15 C -0.156 4.156 16 C 0.014 3.986 17 N -0.347 5.347 18 C -0.380 4.380 19 H 0.067 0.933 20 C -0.231 4.231 21 N -0.606 5.606 22 Si 0.778 3.222 23 H -0.202 1.202 24 H -0.239 1.239 25 H -0.187 1.187 26 C -0.006 4.006 27 C -0.162 4.162 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.256 0.744 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.256 0.744 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.107 0.893 47 H 0.063 0.937 48 H 0.051 0.949 49 H 0.067 0.933 50 H 0.070 0.930 51 H 0.061 0.939 52 H 0.049 0.951 53 H 0.066 0.934 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -31.809 19.302 8.505 38.167 hybrid contribution 1.116 -0.799 0.322 1.410 sum -30.693 18.503 8.827 36.910 Atomic orbital electron populations 1.21883 0.88077 1.06242 1.06249 1.21540 0.92299 0.82281 0.74046 1.90720 1.71942 1.32897 1.52181 1.45955 1.06252 1.10119 1.74935 1.21132 0.82619 0.93285 1.05910 1.20719 0.83049 0.91138 0.75452 1.90701 1.56175 1.47100 1.51566 1.45861 1.06501 1.10153 1.73952 1.21405 0.95085 0.82051 1.01795 1.21727 0.92254 0.98054 1.03878 1.21462 0.95292 0.96023 1.02411 1.21578 0.94965 0.95989 1.02593 1.21571 0.93251 0.97778 1.01824 1.21083 0.95887 0.94793 0.97634 1.22032 0.95043 1.01177 0.97381 1.21156 0.94149 0.84515 0.98742 1.44511 1.48463 1.13854 1.27915 1.18913 1.10154 1.18102 0.90870 0.93296 1.25907 0.97820 0.97749 1.01579 1.69973 1.34381 1.19637 1.36578 0.85865 0.75566 0.78508 0.82231 1.20197 1.23878 1.18668 1.21396 0.95001 0.95337 0.88886 1.21975 0.94752 0.98099 1.01369 0.88184 0.87682 0.87711 0.74408 0.87264 0.87354 0.74353 0.92301 0.92065 0.90066 0.90346 0.92091 0.91626 0.91395 0.91545 0.92753 0.91559 0.91160 0.89267 0.93703 0.94925 0.93301 0.92982 0.93908 0.95143 0.93421 0.90549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.79 10.39 71.24 0.74 -0.05 16 2 C 0.51 6.66 7.94 87.66 0.70 7.36 16 3 O -0.60 -13.06 17.10 -3.05 -0.05 -13.11 16 4 N -0.72 -7.85 5.53 -466.77 -2.58 -10.43 16 5 C 0.10 0.94 6.15 85.63 0.53 1.46 16 6 C 0.51 6.31 7.90 87.66 0.69 7.00 16 7 O -0.58 -11.38 15.67 -3.01 -0.05 -11.42 16 8 N -0.71 -5.87 5.56 -463.06 -2.57 -8.44 16 9 C 0.12 1.25 5.67 86.38 0.49 1.74 16 10 C -0.12 -0.95 5.33 30.59 0.16 -0.79 16 11 C -0.11 -1.28 5.21 30.59 0.16 -1.12 16 12 C -0.11 -1.62 4.97 30.60 0.15 -1.47 16 13 C -0.11 -2.08 4.68 30.60 0.14 -1.94 16 14 C -0.08 -1.99 2.15 -10.66 -0.02 -2.01 16 15 C -0.12 -3.43 5.16 30.78 0.16 -3.27 16 16 C 0.14 5.29 6.50 86.36 0.56 5.85 16 17 N -0.62 -29.76 2.77 -699.10 -1.94 -31.69 16 18 C -0.25 -14.60 10.03 84.03 0.84 -13.75 16 19 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 20 C -0.04 -2.15 5.23 84.86 0.44 -1.71 16 21 N -0.96 -61.44 13.97 21.65 0.30 -61.14 16 22 Si 0.95 47.47 24.34 68.60 1.67 49.14 16 23 H -0.28 -13.01 6.62 99.48 0.66 -12.35 16 24 H -0.31 -15.66 7.11 99.48 0.71 -14.95 16 25 H -0.26 -12.54 6.64 99.48 0.66 -11.88 16 26 C 0.12 5.06 4.21 86.36 0.36 5.42 16 27 C -0.12 -4.06 5.36 30.67 0.16 -3.89 16 28 H 0.10 0.04 7.91 -2.39 -0.02 0.03 16 29 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.42 4.01 7.27 -92.71 -0.67 3.34 16 32 H 0.11 0.86 8.14 -2.39 -0.02 0.85 16 33 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.42 1.06 8.47 -92.71 -0.79 0.27 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.08 0.54 8.14 -2.39 -0.02 0.53 16 39 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.07 0.97 6.53 -2.39 -0.02 0.95 16 43 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 46 H 0.09 2.01 6.52 -2.38 -0.02 1.99 16 47 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.05 1.92 7.93 -2.39 -0.02 1.91 16 50 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 51 H 0.04 2.05 4.50 -2.39 -0.01 2.03 16 52 H 0.03 1.26 7.07 -2.39 -0.02 1.24 16 53 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 54 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -80.18 421.34 0.38 -79.79 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -0.68 Total: 8.48 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 6.28 Total: -1.17 kcal Atomic # 7 Polarization: -104.92 SS G_CDS: -6.79 Total: -111.71 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.10 Total: -24.54 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.67 Total: 49.14 kcal Total: -80.18 0.38 -79.79 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717242210.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.976 kcal (2) G-P(sol) polarization free energy of solvation -80.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds