Wall clock time and date at job start Sat Apr 11 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46846 * 110.99531 * 2 1 4 4 C 1.53042 * 109.52281 * 185.83654 * 3 2 1 5 5 C 1.53115 * 109.27786 * 300.82911 * 4 3 2 6 6 C 1.53000 * 109.51918 * 177.55892 * 5 4 3 7 7 C 1.50706 * 109.46967 * 174.99658 * 6 5 4 8 8 O 1.21273 * 120.00178 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99743 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99778 * 174.88686 * 9 7 6 11 11 C 1.52998 * 109.45198 * 302.68339 * 10 9 7 12 12 O 1.42899 * 109.47051 * 300.69963 * 11 10 9 13 13 C 1.53043 * 109.45996 * 62.65098 * 10 9 7 14 14 C 1.53187 * 109.31738 * 58.65209 * 13 10 9 15 15 N 1.46923 * 108.77529 * 54.63454 * 14 13 10 16 16 C 1.36937 * 120.63124 * 126.36613 * 15 14 13 17 17 H 1.08003 * 120.00311 * 211.71444 * 16 15 14 18 18 C 1.38812 * 119.99506 * 31.72697 * 16 15 14 19 19 N 1.31618 * 120.00525 * 11.03122 * 18 16 15 20 20 Si 1.86805 * 119.99754 * 191.03505 * 18 16 15 21 21 H 1.48498 * 109.47254 * 59.99300 * 20 18 16 22 22 H 1.48496 * 109.47270 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46777 * 299.99433 * 20 18 16 24 24 C 1.46931 * 118.74098 * 306.39773 * 15 14 13 25 25 C 1.53038 * 109.46005 * 182.71355 * 10 9 7 26 26 C 1.53112 * 109.16659 * 57.65155 * 5 4 3 27 27 C 1.46842 * 111.00131 * 124.20952 * 2 1 3 28 28 H 1.08997 * 109.46958 * 59.99669 * 1 2 3 29 29 H 1.09004 * 109.46468 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46801 * 299.99525 * 1 2 3 31 31 H 1.09002 * 109.46200 * 65.82588 * 3 2 1 32 32 H 1.08997 * 109.46019 * 305.85287 * 3 2 1 33 33 H 1.09000 * 109.50277 * 180.88159 * 4 3 2 34 34 H 1.09005 * 109.49996 * 60.76446 * 4 3 2 35 35 H 1.09000 * 109.52210 * 297.67873 * 5 4 3 36 36 H 1.08999 * 109.47663 * 54.99675 * 6 5 4 37 37 H 1.09001 * 109.47234 * 294.99014 * 6 5 4 38 38 H 0.97002 * 120.00351 * 354.88668 * 9 7 6 39 39 H 1.09000 * 109.46959 * 60.69078 * 11 10 9 40 40 H 1.08995 * 109.47312 * 180.69681 * 11 10 9 41 41 H 0.96701 * 114.00242 * 180.02562 * 12 11 10 42 42 H 1.09007 * 109.49383 * 298.70033 * 13 10 9 43 43 H 1.08995 * 109.49905 * 178.61075 * 13 10 9 44 44 H 1.08991 * 109.59104 * 174.42453 * 14 13 10 45 45 H 1.09007 * 109.58420 * 294.70963 * 14 13 10 46 46 H 0.96996 * 120.00009 * 180.02562 * 19 18 16 47 47 H 1.08995 * 109.58814 * 173.39363 * 24 15 14 48 48 H 1.08997 * 109.58360 * 293.81903 * 24 15 14 49 49 H 1.09000 * 109.49642 * 181.39139 * 25 10 9 50 50 H 1.09000 * 109.49522 * 61.30153 * 25 10 9 51 51 H 1.09003 * 109.50634 * 62.28470 * 26 5 4 52 52 H 1.08999 * 109.50589 * 182.40364 * 26 5 4 53 53 H 1.08993 * 109.46574 * 294.18453 * 27 2 1 54 54 H 1.09010 * 109.46200 * 54.14975 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5182 1.3343 -0.1467 5 6 4.1188 0.5370 1.0143 6 6 5.6361 0.4451 0.8405 7 6 6.2395 -0.2322 2.0440 8 8 5.5263 -0.6043 2.9515 9 7 7.5718 -0.4244 2.1116 10 6 8.1709 -0.9801 3.3275 11 6 7.8132 -0.0942 4.5225 12 8 8.3012 1.2297 4.2969 13 6 7.6322 -2.3934 3.5613 14 6 7.9619 -3.2685 2.3479 15 7 9.4088 -3.2076 2.1001 16 6 10.1503 -4.3554 2.0107 17 1 11.1805 -4.3594 2.3348 18 6 9.5777 -5.5137 1.5033 19 7 8.4039 -5.4624 0.9102 20 14 10.4733 -7.1453 1.6625 21 1 10.6914 -7.4523 3.0989 22 1 9.6561 -8.2208 1.0455 23 1 11.7842 -7.0600 0.9699 24 6 10.0452 -1.8917 1.9508 25 6 9.6921 -1.0321 3.1686 26 6 3.5183 -0.8714 1.0208 27 6 1.9953 -0.7707 1.1337 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7324 1.8608 0.9376 32 1 1.5634 1.9257 -0.8330 33 1 3.9098 2.3514 -0.1309 34 1 3.7814 0.8569 -1.0906 35 1 3.8897 1.0360 1.9559 36 1 6.0519 1.4478 0.7413 37 1 5.8649 -0.1333 -0.0546 38 1 8.1341 -0.1948 1.3552 39 1 6.7302 -0.0665 4.6430 40 1 8.2690 -0.5006 5.4254 41 1 8.1102 1.8473 5.0161 42 1 6.5514 -2.3529 3.6977 43 1 8.0960 -2.8169 4.4520 44 1 7.6688 -4.2987 2.5498 45 1 7.4237 -2.9000 1.4746 46 1 8.0037 -6.2719 0.5560 47 1 11.1267 -2.0136 1.8907 48 1 9.6789 -1.4095 1.0445 49 1 10.1366 -1.4684 4.0631 50 1 10.0776 -0.0227 3.0255 51 1 3.7815 -1.3835 0.0952 52 1 3.9100 -1.4302 1.8706 53 1 1.7325 -0.2710 2.0659 54 1 1.5635 -1.7716 1.1241 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717353151.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:10 Heat of formation + Delta-G solvation = -92.042422 kcal Electronic energy + Delta-G solvation = -32128.208267 eV Core-core repulsion = 28098.973412 eV Total energy + Delta-G solvation = -4029.234855 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.57315 -40.08559 -38.76440 -37.41703 -35.66196 -35.23507 -33.63527 -32.23514 -31.73810 -31.47803 -29.96518 -28.33901 -26.36189 -25.63638 -24.08996 -23.94956 -23.37919 -22.47626 -21.38541 -20.57415 -20.09586 -18.82817 -18.17899 -17.83625 -16.89514 -16.77112 -16.44117 -16.34286 -16.00034 -15.79111 -15.53210 -15.41508 -15.20001 -15.06031 -14.90830 -14.50477 -14.30769 -14.15148 -13.83497 -13.70287 -13.35688 -13.27202 -13.19650 -13.03982 -12.94695 -12.66283 -12.58577 -12.44012 -12.36060 -12.24627 -12.08176 -12.03005 -11.84560 -11.59325 -11.50443 -11.37925 -11.22026 -11.13642 -10.97034 -10.53765 -10.18975 -9.79912 -9.27699 -8.59768 -7.85175 -5.36442 1.46393 1.48593 1.55064 1.86915 2.37649 2.51267 3.03075 3.27840 3.34228 3.71178 3.73876 3.80214 3.86814 3.94915 4.05231 4.15537 4.25650 4.30047 4.35311 4.43886 4.49764 4.53330 4.56147 4.62170 4.64541 4.68283 4.69416 4.75918 4.78578 4.79894 4.90975 4.94001 4.97105 5.00280 5.02130 5.07944 5.13271 5.18665 5.20139 5.24879 5.32992 5.40193 5.48564 5.53846 5.64670 5.72520 5.81365 6.12420 6.18862 6.42009 6.78740 6.90596 7.17090 7.47774 7.87125 8.40296 9.19840 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011622 B = 0.003338 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.727551 B = 8385.774718 C =10080.735314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.558 5.558 3 C 0.056 3.944 4 C -0.107 4.107 5 C -0.061 4.061 6 C -0.130 4.130 7 C 0.513 3.487 8 O -0.571 6.571 9 N -0.703 5.703 10 C 0.196 3.804 11 C 0.076 3.924 12 O -0.572 6.572 13 C -0.138 4.138 14 C 0.199 3.801 15 N -0.607 5.607 16 C -0.265 4.265 17 H 0.066 0.934 18 C -0.048 4.048 19 N -0.934 5.934 20 Si 0.967 3.033 21 H -0.279 1.279 22 H -0.296 1.296 23 H -0.273 1.273 24 C 0.142 3.858 25 C -0.118 4.118 26 C -0.113 4.113 27 C 0.064 3.936 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.026 0.974 31 H 0.030 0.970 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.117 0.883 37 H 0.094 0.906 38 H 0.404 0.596 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.391 0.609 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.042 0.958 45 H -0.004 1.004 46 H 0.248 0.752 47 H 0.057 0.943 48 H 0.022 0.978 49 H 0.067 0.933 50 H 0.088 0.912 51 H 0.053 0.947 52 H 0.059 0.941 53 H 0.027 0.973 54 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.497 18.343 1.144 20.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.283 5.283 3 C -0.072 4.072 4 C -0.145 4.145 5 C -0.080 4.080 6 C -0.170 4.170 7 C 0.301 3.699 8 O -0.451 6.451 9 N -0.354 5.354 10 C 0.109 3.891 11 C -0.002 4.002 12 O -0.380 6.380 13 C -0.178 4.178 14 C 0.073 3.927 15 N -0.331 5.331 16 C -0.395 4.395 17 H 0.084 0.916 18 C -0.244 4.244 19 N -0.579 5.579 20 Si 0.795 3.205 21 H -0.205 1.205 22 H -0.222 1.222 23 H -0.199 1.199 24 C 0.017 3.983 25 C -0.157 4.157 26 C -0.151 4.151 27 C -0.064 4.064 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.135 0.865 37 H 0.113 0.887 38 H 0.239 0.761 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.240 0.760 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.014 0.986 46 H 0.057 0.943 47 H 0.076 0.924 48 H 0.040 0.960 49 H 0.085 0.915 50 H 0.107 0.893 51 H 0.071 0.929 52 H 0.078 0.922 53 H 0.045 0.955 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.695 17.468 0.730 19.991 hybrid contribution 0.061 -0.856 0.997 1.315 sum -9.634 16.612 1.727 19.281 Atomic orbital electron populations 1.22394 0.86382 1.02385 1.01159 1.61967 1.08537 1.14508 1.43272 1.22139 0.95690 0.88536 1.00809 1.21649 0.94172 1.00700 0.97969 1.20824 0.92308 0.95871 0.98990 1.21749 0.96495 1.02811 0.95950 1.21071 0.81784 0.78166 0.88866 1.90551 1.60924 1.52195 1.41451 1.45937 1.07613 1.64219 1.17597 1.20110 0.93512 0.90977 0.84499 1.22419 0.98340 0.83139 0.96346 1.86399 1.81952 1.20502 1.49100 1.22346 1.00601 0.95164 0.99697 1.20254 0.83617 0.96832 0.91980 1.44231 1.04310 1.01309 1.83237 1.19465 0.96350 0.89082 1.34589 0.91607 1.25909 0.98334 1.02269 0.97860 1.70146 1.18852 1.27664 1.41268 0.85360 0.77960 0.79444 0.77751 1.20515 1.22219 1.19898 1.21055 0.96747 0.85662 0.94865 1.22070 0.93070 1.00622 0.99944 1.21657 0.94438 0.97517 1.01495 1.21972 0.95371 0.97909 0.91157 0.90094 0.91406 0.95562 0.95144 0.89217 0.89290 0.91179 0.91976 0.86483 0.88745 0.76082 0.93004 0.92718 0.75994 0.91785 0.92739 0.93927 0.98605 0.94292 0.92407 0.96043 0.91473 0.89325 0.92861 0.92215 0.95492 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.59 127.69 1.22 1.64 16 2 N -0.56 -12.00 4.91 -922.56 -4.53 -16.53 16 3 C 0.06 1.00 5.46 86.33 0.47 1.47 16 4 C -0.11 -1.92 5.38 30.65 0.16 -1.75 16 5 C -0.06 -1.41 1.90 -10.72 -0.02 -1.43 16 6 C -0.13 -3.02 5.18 29.85 0.15 -2.86 16 7 C 0.51 15.82 6.97 87.66 0.61 16.43 16 8 O -0.57 -20.69 10.24 -3.01 -0.03 -20.72 16 9 N -0.70 -21.73 3.98 -422.80 -1.68 -23.42 16 10 C 0.20 6.49 0.44 3.63 0.00 6.49 16 11 C 0.08 2.18 5.68 71.98 0.41 2.59 16 12 O -0.57 -13.76 12.84 -148.98 -1.91 -15.67 16 13 C -0.14 -5.65 4.71 30.67 0.14 -5.50 16 14 C 0.20 9.92 4.99 86.36 0.43 10.35 16 15 N -0.61 -30.23 2.98 -699.11 -2.09 -32.31 16 16 C -0.26 -14.53 9.57 84.03 0.80 -13.73 16 17 H 0.07 3.50 7.85 -2.91 -0.02 3.48 16 18 C -0.05 -2.71 5.04 84.86 0.43 -2.28 16 19 N -0.93 -56.01 11.10 21.65 0.24 -55.77 16 20 Si 0.97 45.28 29.57 68.60 2.03 47.31 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 22 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 24 C 0.14 5.62 6.24 86.36 0.54 6.16 16 25 C -0.12 -3.84 4.85 30.67 0.15 -3.69 16 26 C -0.11 -3.18 5.09 30.65 0.16 -3.02 16 27 C 0.06 1.58 5.46 86.33 0.47 2.05 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.12 8.09 -2.39 -0.02 1.10 16 30 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.09 1.30 8.12 -2.39 -0.02 1.28 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.06 1.58 7.95 -2.39 -0.02 1.56 16 36 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.40 11.46 7.19 -92.71 -0.67 10.79 16 39 H 0.05 1.64 6.17 -2.39 -0.01 1.63 16 40 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.39 5.83 9.12 -74.06 -0.68 5.15 16 42 H 0.06 2.73 6.23 -2.38 -0.01 2.72 16 43 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.04 2.47 6.14 -2.39 -0.01 2.45 16 45 H 0.00 -0.22 7.74 -2.38 -0.02 -0.24 16 46 H 0.25 14.56 8.31 -92.71 -0.77 13.78 16 47 H 0.06 2.24 7.93 -2.39 -0.02 2.22 16 48 H 0.02 0.83 6.89 -2.39 -0.02 0.81 16 49 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 50 H 0.09 2.51 7.66 -2.39 -0.02 2.49 16 51 H 0.05 1.59 8.14 -2.39 -0.02 1.58 16 52 H 0.06 2.05 6.04 -2.39 -0.01 2.03 16 53 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 54 H 0.07 1.70 8.09 -2.38 -0.02 1.68 16 Total: -1.00 -69.02 400.74 -2.29 -71.31 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: -0.46 Total: 32.87 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 6.14 Total: 12.92 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -8.06 Total: -128.03 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -1.94 Total: -36.39 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -69.02 -2.29 -71.31 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717353151.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.729 kcal (2) G-P(sol) polarization free energy of solvation -69.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds