Wall clock time and date at job start Sat Apr 11 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 120.00671 * 2 1 4 4 O 1.21277 * 119.99502 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00520 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47257 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.46661 * 180.02562 * 6 5 3 8 8 C 1.53009 * 109.46562 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.46790 * 179.97438 * 8 7 6 10 10 O 1.21277 * 120.00384 * 359.72133 * 9 8 7 11 11 N 1.34783 * 119.99969 * 179.97438 * 9 8 7 12 12 C 1.46494 * 119.99726 * 0.02562 * 11 9 8 13 13 C 1.46498 * 120.00206 * 179.97438 * 11 9 8 14 14 C 1.53001 * 109.47350 * 305.78542 * 13 11 9 15 15 C 1.52997 * 109.46966 * 299.99580 * 14 13 11 16 16 C 1.53004 * 109.47273 * 300.00365 * 15 14 13 17 17 N 1.46496 * 109.47373 * 179.97438 * 16 15 14 18 18 C 1.36936 * 120.00068 * 84.99944 * 17 16 15 19 19 H 1.08004 * 119.99602 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00248 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00175 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00101 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47216 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47020 * 119.99508 * 22 20 18 25 25 H 1.48497 * 109.46674 * 239.99427 * 22 20 18 26 26 C 1.52999 * 109.46977 * 59.99617 * 16 15 14 27 27 C 1.52992 * 109.47173 * 185.77890 * 13 11 9 28 28 H 1.09003 * 109.46408 * 59.99816 * 1 2 3 29 29 H 1.08992 * 109.47421 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46963 * 300.00795 * 1 2 3 31 31 H 0.97006 * 119.99945 * 180.02562 * 2 1 3 32 32 H 1.09006 * 109.46955 * 59.99398 * 5 3 2 33 33 H 1.09008 * 109.46942 * 300.00098 * 5 3 2 34 34 H 1.08994 * 109.47314 * 59.99804 * 6 5 3 35 35 H 1.08997 * 109.47000 * 299.99412 * 6 5 3 36 36 H 1.08994 * 109.47478 * 59.99829 * 7 6 5 37 37 H 1.08997 * 109.46872 * 299.99415 * 7 6 5 38 38 H 1.09004 * 109.47208 * 59.99957 * 8 7 6 39 39 H 1.09002 * 109.46865 * 299.99756 * 8 7 6 40 40 H 1.09006 * 109.47213 * 84.07919 * 12 11 9 41 41 H 1.08999 * 109.47398 * 204.07899 * 12 11 9 42 42 H 1.09006 * 109.47272 * 324.08233 * 12 11 9 43 43 H 1.09005 * 109.46537 * 65.77829 * 13 11 9 44 44 H 1.08996 * 109.47388 * 59.99685 * 14 13 11 45 45 H 1.09000 * 109.47056 * 180.02562 * 14 13 11 46 46 H 1.08999 * 109.47764 * 180.02562 * 15 14 13 47 47 H 1.09001 * 109.47455 * 59.99887 * 15 14 13 48 48 H 1.09000 * 109.47164 * 299.99786 * 16 15 14 49 49 H 0.97001 * 120.00292 * 265.00097 * 17 16 15 50 50 H 0.96998 * 120.00232 * 180.02562 * 21 20 18 51 51 H 1.09005 * 109.47163 * 180.02562 * 26 16 15 52 52 H 1.09001 * 109.47105 * 60.00873 * 26 16 15 53 53 H 1.09000 * 109.47360 * 180.02562 * 27 13 11 54 54 H 1.09001 * 109.47564 * 300.00344 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5327 2.2174 -0.0005 5 6 3.6460 1.1671 0.0006 6 6 4.1561 2.6095 0.0011 7 6 5.6861 2.6093 0.0011 8 6 6.1962 4.0519 0.0009 9 6 7.7031 4.0518 0.0015 10 8 8.3095 3.0015 0.0071 11 7 8.3772 5.2190 0.0010 12 6 7.6447 6.4877 0.0004 13 6 9.8421 5.2189 0.0021 14 6 10.3512 4.3764 1.1734 15 6 9.8404 4.9693 2.4881 16 6 10.3503 6.4047 2.6325 17 7 9.8606 6.9726 3.8910 18 6 10.5470 6.7511 5.0550 19 1 11.4491 6.1573 5.0453 20 6 10.0827 7.2888 6.2476 21 7 8.9831 8.0120 6.2595 22 14 11.0194 6.9872 7.8354 23 1 12.2133 6.1499 7.5545 24 1 11.4499 8.2867 8.4107 25 1 10.1393 6.2846 8.8034 26 6 9.8412 7.2470 1.4611 27 6 10.3521 6.6541 0.1465 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.9500 -0.8401 -0.0004 32 1 4.0096 0.6529 -0.8891 33 1 4.0090 0.6534 0.8909 34 1 3.7924 3.1232 0.8910 35 1 3.7932 3.1235 -0.8889 36 1 6.0494 2.0958 -0.8891 37 1 6.0493 2.0952 0.8909 38 1 5.8329 4.5658 0.8909 39 1 5.8328 4.5656 -0.8891 40 1 7.3712 6.7498 1.0225 41 1 8.2756 7.2713 -0.4192 42 1 6.7422 6.3860 -0.6024 43 1 10.2061 4.7964 -0.9345 44 1 9.9880 3.3540 1.0706 45 1 11.4412 4.3768 1.1745 46 1 10.2034 4.3695 3.3226 47 1 8.7503 4.9695 2.4873 48 1 11.4403 6.4046 2.6333 49 1 9.0502 7.5056 3.8997 50 1 8.6589 8.3881 7.0928 51 1 10.2048 8.2695 1.5637 52 1 8.7512 7.2471 1.4604 53 1 11.4421 6.6541 0.1469 54 1 9.9894 7.2543 -0.6880 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717449473.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:15 Heat of formation + Delta-G solvation = -95.091094 kcal Electronic energy + Delta-G solvation = -30246.323299 eV Core-core repulsion = 26216.956243 eV Total energy + Delta-G solvation = -4029.367056 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.62295 -40.68204 -39.21824 -36.61756 -36.15121 -35.54372 -34.82355 -32.93549 -31.94775 -31.69428 -29.62306 -28.19001 -27.31720 -25.90633 -25.19255 -23.55885 -22.77536 -22.00979 -21.32167 -20.97308 -19.67147 -19.08372 -18.11358 -17.72398 -17.30608 -17.07197 -16.87088 -16.77287 -16.57059 -16.06596 -15.59244 -15.31405 -15.19182 -14.83156 -14.81065 -14.61647 -14.20335 -13.97571 -13.75993 -13.58929 -13.42049 -13.32352 -13.09875 -13.08939 -13.01272 -12.85657 -12.79125 -12.65667 -12.42603 -12.22123 -12.11548 -12.07631 -11.99479 -11.88622 -11.50427 -11.43452 -11.30982 -11.07149 -10.95321 -10.88621 -10.34766 -10.12456 -9.46227 -8.97759 -7.95001 -5.21977 1.44306 1.45003 1.54789 1.64883 1.74628 2.13150 2.35761 2.54785 3.37711 3.56943 3.77897 3.82748 3.88591 3.92029 3.99578 4.04216 4.29016 4.34035 4.36734 4.40272 4.41589 4.44692 4.49999 4.58407 4.60514 4.63137 4.65249 4.68086 4.72916 4.81711 4.85596 4.87219 4.89742 4.94228 4.97013 5.08290 5.08593 5.17493 5.25377 5.29402 5.32749 5.34625 5.43228 5.48091 5.51320 5.56486 5.66155 5.79481 6.28667 6.54071 6.56384 7.28318 7.31173 7.34008 8.12356 8.35242 9.28558 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010438 B = 0.002284 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.843111 B =12254.416963 C =13973.815738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.728 5.728 3 C 0.504 3.496 4 O -0.590 6.590 5 C -0.136 4.136 6 C -0.098 4.098 7 C -0.094 4.094 8 C -0.137 4.137 9 C 0.506 3.494 10 O -0.577 6.577 11 N -0.605 5.605 12 C 0.062 3.938 13 C 0.155 3.845 14 C -0.131 4.131 15 C -0.111 4.111 16 C 0.174 3.826 17 N -0.736 5.736 18 C -0.235 4.235 19 H 0.069 0.931 20 C -0.077 4.077 21 N -0.968 5.968 22 Si 0.968 3.032 23 H -0.269 1.269 24 H -0.291 1.291 25 H -0.295 1.295 26 C -0.136 4.136 27 C -0.111 4.111 28 H 0.048 0.952 29 H 0.109 0.891 30 H 0.044 0.956 31 H 0.419 0.581 32 H 0.119 0.881 33 H 0.109 0.891 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.094 0.906 39 H 0.117 0.883 40 H 0.052 0.948 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.022 0.978 47 H 0.036 0.964 48 H 0.033 0.967 49 H 0.372 0.628 50 H 0.250 0.750 51 H 0.059 0.941 52 H 0.084 0.916 53 H 0.085 0.915 54 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.890 -13.568 -21.219 27.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.381 5.381 3 C 0.292 3.708 4 O -0.470 6.470 5 C -0.175 4.175 6 C -0.136 4.136 7 C -0.132 4.132 8 C -0.177 4.177 9 C 0.296 3.704 10 O -0.458 6.458 11 N -0.338 5.338 12 C -0.080 4.080 13 C 0.052 3.948 14 C -0.170 4.170 15 C -0.151 4.151 16 C 0.066 3.934 17 N -0.375 5.375 18 C -0.367 4.367 19 H 0.087 0.913 20 C -0.269 4.269 21 N -0.619 5.619 22 Si 0.797 3.203 23 H -0.194 1.194 24 H -0.218 1.218 25 H -0.222 1.222 26 C -0.174 4.174 27 C -0.148 4.148 28 H 0.067 0.933 29 H 0.128 0.872 30 H 0.063 0.937 31 H 0.256 0.744 32 H 0.137 0.863 33 H 0.127 0.873 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.112 0.888 39 H 0.135 0.865 40 H 0.070 0.930 41 H 0.117 0.883 42 H 0.110 0.890 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.041 0.959 47 H 0.055 0.945 48 H 0.051 0.949 49 H 0.204 0.796 50 H 0.059 0.941 51 H 0.077 0.923 52 H 0.103 0.897 53 H 0.103 0.897 54 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.856 -13.418 -21.106 27.265 hybrid contribution 0.256 -0.203 1.651 1.683 sum -10.601 -13.621 -19.455 26.008 Atomic orbital electron populations 1.21638 0.79352 1.04062 1.01166 1.45837 1.08264 1.08986 1.74968 1.21312 0.91526 0.83420 0.74549 1.90693 1.71706 1.33179 1.51462 1.21698 0.89575 0.99789 1.06472 1.21255 0.94026 0.95618 1.02733 1.21242 0.94293 0.94845 1.02844 1.21752 0.90050 1.00352 1.05515 1.21162 0.91282 0.82887 0.75097 1.90596 1.71134 1.32431 1.51613 1.47985 1.06501 1.06800 1.72468 1.22312 0.98013 0.85723 1.01945 1.21005 0.79446 0.96706 0.97652 1.21918 1.00583 1.00410 0.94057 1.21887 0.99245 0.98088 0.95871 1.20439 0.95895 0.91447 0.85591 1.42619 1.29936 1.61605 1.03360 1.19607 1.05015 1.24979 0.87094 0.91348 1.25494 0.99154 1.01432 1.00848 1.69806 1.24939 1.40778 1.26388 0.85150 0.77944 0.77060 0.80122 1.19401 1.21821 1.22226 1.22213 1.02926 0.98594 0.93665 1.21783 1.01957 0.93777 0.97331 0.93295 0.87224 0.93680 0.74400 0.86320 0.87266 0.92716 0.91382 0.90978 0.92661 0.88817 0.86505 0.92967 0.88270 0.89035 0.90277 0.91330 0.91097 0.95928 0.94514 0.94873 0.79620 0.94111 0.92261 0.89744 0.89681 0.88303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.70 127.77 1.37 2.21 16 2 N -0.73 -8.10 5.71 -484.54 -2.77 -10.86 16 3 C 0.50 9.06 7.83 87.66 0.69 9.75 16 4 O -0.59 -16.40 15.98 -3.02 -0.05 -16.44 16 5 C -0.14 -1.76 5.70 29.85 0.17 -1.59 16 6 C -0.10 -1.70 4.50 30.60 0.14 -1.56 16 7 C -0.09 -1.78 4.50 30.60 0.14 -1.64 16 8 C -0.14 -2.69 4.33 29.85 0.13 -2.56 16 9 C 0.51 13.32 7.22 87.65 0.63 13.96 16 10 O -0.58 -19.08 13.68 -3.02 -0.04 -19.12 16 11 N -0.60 -14.37 2.28 -822.60 -1.87 -16.25 16 12 C 0.06 1.12 8.06 127.77 1.03 2.15 16 13 C 0.15 3.85 3.05 44.99 0.14 3.99 16 14 C -0.13 -4.12 5.14 30.59 0.16 -3.97 16 15 C -0.11 -4.30 5.34 30.59 0.16 -4.13 16 16 C 0.17 6.96 2.77 44.99 0.12 7.08 16 17 N -0.74 -37.67 5.12 -322.94 -1.65 -39.32 16 18 C -0.23 -13.40 9.93 84.03 0.83 -12.56 16 19 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 20 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 21 N -0.97 -59.95 13.06 21.65 0.28 -59.66 16 22 Si 0.97 47.37 29.55 68.60 2.03 49.39 16 23 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 25 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 26 C -0.14 -4.06 4.84 30.59 0.15 -3.91 16 27 C -0.11 -2.41 4.90 30.59 0.15 -2.26 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.60 16 29 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.42 1.69 8.83 -92.70 -0.82 0.87 16 32 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 35 H 0.07 1.20 8.10 -2.39 -0.02 1.19 16 36 H 0.07 1.32 8.10 -2.39 -0.02 1.30 16 37 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 38 H 0.09 1.88 8.11 -2.39 -0.02 1.86 16 39 H 0.12 1.66 7.42 -2.39 -0.02 1.64 16 40 H 0.05 1.15 6.49 -2.38 -0.02 1.14 16 41 H 0.10 1.48 5.26 -2.39 -0.01 1.47 16 42 H 0.09 1.16 6.69 -2.38 -0.02 1.14 16 43 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 44 H 0.07 2.42 5.76 -2.39 -0.01 2.40 16 45 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.04 1.50 7.46 -2.39 -0.02 1.48 16 48 H 0.03 1.38 8.08 -2.39 -0.02 1.36 16 49 H 0.37 20.22 7.80 -92.71 -0.72 19.49 16 50 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 51 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 52 H 0.08 2.44 3.94 -2.39 -0.01 2.43 16 53 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 54 H 0.10 1.57 6.68 -2.39 -0.02 1.55 16 Total: -1.00 -80.43 413.50 1.75 -78.68 By element: Atomic # 1 Polarization: 33.35 SS G_CDS: -0.64 Total: 32.70 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 6.47 Total: 0.89 kcal Atomic # 7 Polarization: -120.08 SS G_CDS: -6.01 Total: -126.09 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -0.09 Total: -35.57 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.39 kcal Total: -80.43 1.75 -78.68 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717449473.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.412 kcal (2) G-P(sol) polarization free energy of solvation -80.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds