Wall clock time and date at job start Sat Apr 11 2020 05:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46896 * 110.99805 * 2 1 4 4 C 1.46899 * 110.99769 * 123.95279 * 2 1 3 5 5 C 1.52997 * 109.47254 * 66.04707 * 4 2 1 6 6 C 1.50697 * 109.47466 * 179.97438 * 5 4 2 7 7 O 1.21282 * 120.00011 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00369 * 180.02562 * 6 5 4 9 9 C 1.46931 * 120.56460 * 359.71928 * 8 6 5 10 10 C 1.52857 * 108.94895 * 234.11354 * 9 8 6 11 11 C 1.52409 * 109.45807 * 306.52985 * 10 9 8 12 12 C 1.53980 * 110.24239 * 297.33080 * 11 10 9 13 13 O 1.44551 * 104.69395 * 265.09995 * 12 11 10 14 14 C 1.44470 * 105.36204 * 319.98227 * 13 12 11 15 15 H 1.09003 * 110.36318 * 281.33038 * 14 13 12 16 16 C 1.52998 * 110.36858 * 159.11772 * 14 13 12 17 17 N 1.46502 * 109.47229 * 66.45032 * 16 14 13 18 18 C 1.36934 * 119.99858 * 179.97438 * 17 16 14 19 19 H 1.07991 * 120.00420 * 0.02562 * 18 17 16 20 20 C 1.38820 * 119.99923 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99627 * 0.02562 * 20 18 17 22 22 Si 1.86790 * 120.00113 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47408 * 60.00015 * 22 20 18 24 24 H 1.48501 * 109.47356 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47397 * 300.00011 * 22 20 18 26 26 C 1.53982 * 110.27914 * 182.35073 * 11 10 9 27 27 C 1.52402 * 111.00770 * 59.80485 * 11 10 9 28 28 C 1.46920 * 120.56626 * 180.02562 * 8 6 5 29 29 H 1.08995 * 109.47407 * 296.04618 * 1 2 3 30 30 H 1.09006 * 109.46770 * 56.04664 * 1 2 3 31 31 H 1.09003 * 109.46848 * 176.04346 * 1 2 3 32 32 H 1.08998 * 109.47200 * 183.95269 * 3 2 1 33 33 H 1.08998 * 109.47707 * 303.95146 * 3 2 1 34 34 H 1.09001 * 109.47500 * 63.95378 * 3 2 1 35 35 H 1.09002 * 109.47043 * 186.04778 * 4 2 1 36 36 H 1.09001 * 109.47354 * 306.04839 * 4 2 1 37 37 H 1.09002 * 109.47153 * 300.00004 * 5 4 2 38 38 H 1.08998 * 109.47533 * 59.99633 * 5 4 2 39 39 H 1.08996 * 109.59357 * 353.92706 * 9 8 6 40 40 H 1.08999 * 109.59137 * 114.39067 * 9 8 6 41 41 H 1.09008 * 109.54981 * 186.47128 * 10 9 8 42 42 H 1.09002 * 109.36377 * 66.47272 * 10 9 8 43 43 H 1.09000 * 110.39556 * 23.90929 * 12 11 10 44 44 H 1.09008 * 110.39483 * 146.30145 * 12 11 10 45 45 H 1.09002 * 109.46794 * 186.44719 * 16 14 13 46 46 H 1.08997 * 109.47049 * 306.45128 * 16 14 13 47 47 H 0.97005 * 119.99854 * 0.02562 * 17 16 14 48 48 H 0.96999 * 119.99207 * 180.02562 * 21 20 18 49 49 H 1.08995 * 110.54831 * 237.23213 * 26 11 10 50 50 H 1.08995 * 110.54659 * 0.03810 * 26 11 10 51 51 H 1.08995 * 109.48862 * 180.10873 * 27 11 10 52 52 H 1.09002 * 109.49562 * 60.06174 * 27 11 10 53 53 H 1.08997 * 109.59553 * 245.61563 * 28 8 6 54 54 H 1.08996 * 109.59836 * 6.07625 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9704 6 6 2.1720 -3.0285 2.1371 7 8 2.7873 -2.4632 3.0161 8 7 1.9716 -4.3596 2.2038 9 6 1.2227 -5.0562 1.1489 10 6 0.0820 -5.8468 1.7895 11 6 0.6409 -6.7474 2.8847 12 6 1.6160 -7.7759 2.2827 13 8 0.8113 -8.9551 2.0562 14 6 -0.0575 -9.0524 3.2063 15 1 0.4829 -9.4702 4.0557 16 6 -1.2800 -9.9122 2.8791 17 7 -0.8561 -11.2951 2.6461 18 6 -1.7844 -12.2526 2.3353 19 1 -2.8289 -11.9883 2.2616 20 6 -1.3829 -13.5630 2.1150 21 7 -0.1098 -13.8852 2.2054 22 14 -2.6490 -14.8690 1.6905 23 1 -3.3473 -14.4921 0.4353 24 1 -1.9691 -16.1763 1.5058 25 1 -3.6375 -14.9774 2.7934 26 6 -0.4847 -7.5965 3.5037 27 6 1.3386 -5.9273 3.9634 28 6 2.4926 -5.1378 3.3358 29 1 -0.3634 0.4512 0.9232 30 1 -0.3633 0.5740 -0.8525 31 1 -0.3633 -1.0253 -0.0709 32 1 3.0828 1.3433 -0.0708 33 1 1.5899 1.9164 -0.8524 34 1 1.7044 1.8724 0.9233 35 1 3.0797 -0.6611 1.1757 36 1 1.5611 -0.3872 2.0628 37 1 0.5472 -2.3475 0.9323 38 1 2.0658 -2.6214 0.0452 39 1 0.8128 -4.3275 0.4496 40 1 1.8864 -5.7405 0.6204 41 1 -0.4090 -6.4576 1.0318 42 1 -0.6399 -5.1539 2.2218 43 1 2.0234 -7.4074 1.3413 44 1 2.4199 -7.9941 2.9859 45 1 -1.9793 -9.8825 3.7147 46 1 -1.7669 -9.5257 1.9838 47 1 0.0821 -11.5326 2.7126 48 1 0.1707 -14.8009 2.0511 49 1 -0.5444 -7.4274 4.5788 50 1 -1.4389 -7.3729 3.0267 51 1 1.7297 -6.5945 4.7314 52 1 0.6261 -5.2349 4.4117 53 1 3.2584 -5.8286 2.9830 54 1 2.9196 -4.4630 4.0776 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717635642.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:33 Heat of formation + Delta-G solvation = -88.626268 kcal Electronic energy + Delta-G solvation = -30392.776272 eV Core-core repulsion = 26363.689552 eV Total energy + Delta-G solvation = -4029.086720 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.88536 -40.57443 -38.47501 -37.81391 -36.34968 -34.49377 -33.49873 -32.88728 -31.75806 -31.04101 -28.47636 -28.38948 -26.74367 -26.28121 -25.08288 -24.31636 -23.72982 -22.24109 -22.00496 -20.81102 -19.36814 -19.13755 -18.29116 -17.20585 -17.10169 -17.03600 -16.58637 -16.42703 -16.30782 -16.02021 -15.84926 -15.50472 -15.22598 -15.14064 -14.94120 -14.71067 -14.30121 -14.16965 -13.92815 -13.87736 -13.65872 -13.34877 -13.25754 -13.05834 -12.92540 -12.73119 -12.71531 -12.61102 -12.45616 -12.38045 -12.26766 -12.17780 -12.07245 -11.92263 -11.90061 -11.52282 -11.37082 -11.25745 -10.95000 -10.80386 -10.58347 -9.65437 -9.37365 -8.99554 -7.93182 -5.22780 1.47438 1.51559 1.57676 1.59131 1.94205 2.56954 2.97098 3.00128 3.40019 3.46060 3.58350 3.64175 3.82087 3.85890 3.92907 4.04012 4.09320 4.12464 4.19589 4.28250 4.29822 4.35412 4.40158 4.46987 4.51282 4.54578 4.60881 4.64211 4.66313 4.68287 4.72679 4.76917 4.84363 4.90281 4.92634 4.93747 4.95863 5.01181 5.02163 5.04667 5.08286 5.11112 5.22483 5.25858 5.31655 5.48351 5.55406 5.99025 6.04623 6.05197 6.27939 6.38138 7.13301 7.33801 8.10042 8.33595 9.30367 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.025121 B = 0.001878 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.323297 B =14906.970253 C =15474.221290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.556 5.556 3 C 0.023 3.977 4 C 0.075 3.925 5 C -0.129 4.129 6 C 0.514 3.486 7 O -0.588 6.588 8 N -0.606 5.606 9 C 0.103 3.897 10 C -0.116 4.116 11 C -0.080 4.080 12 C 0.044 3.956 13 O -0.390 6.390 14 C 0.074 3.926 15 H 0.056 0.944 16 C 0.157 3.843 17 N -0.744 5.744 18 C -0.250 4.250 19 H 0.078 0.922 20 C -0.078 4.078 21 N -0.970 5.970 22 Si 0.978 3.022 23 H -0.277 1.277 24 H -0.295 1.295 25 H -0.275 1.275 26 C -0.127 4.127 27 C -0.110 4.110 28 C 0.109 3.891 29 H 0.023 0.977 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.023 0.977 35 H 0.068 0.932 36 H 0.026 0.974 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.058 0.942 45 H 0.040 0.960 46 H 0.023 0.977 47 H 0.373 0.627 48 H 0.251 0.749 49 H 0.092 0.908 50 H 0.085 0.915 51 H 0.083 0.917 52 H 0.073 0.927 53 H 0.074 0.926 54 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.592 30.851 -2.554 31.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.280 5.280 3 C -0.125 4.125 4 C -0.054 4.054 5 C -0.168 4.168 6 C 0.304 3.696 7 O -0.469 6.469 8 N -0.339 5.339 9 C -0.019 4.019 10 C -0.154 4.154 11 C -0.081 4.081 12 C -0.032 4.032 13 O -0.310 6.310 14 C 0.016 3.984 15 H 0.074 0.926 16 C 0.030 3.970 17 N -0.386 5.386 18 C -0.381 4.381 19 H 0.096 0.904 20 C -0.270 4.270 21 N -0.621 5.621 22 Si 0.807 3.193 23 H -0.203 1.203 24 H -0.221 1.221 25 H -0.201 1.201 26 C -0.165 4.165 27 C -0.148 4.148 28 C -0.014 4.014 29 H 0.041 0.959 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.042 0.958 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.132 0.868 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.118 0.882 44 H 0.077 0.923 45 H 0.058 0.942 46 H 0.041 0.959 47 H 0.205 0.795 48 H 0.060 0.940 49 H 0.110 0.890 50 H 0.103 0.897 51 H 0.101 0.899 52 H 0.092 0.908 53 H 0.093 0.907 54 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.898 30.722 -2.751 30.980 hybrid contribution -0.276 -0.789 0.920 1.243 sum 2.622 29.933 -1.831 30.103 Atomic orbital electron populations 1.22549 0.86466 1.03274 1.00905 1.62014 1.08986 1.14584 1.42398 1.22422 1.01041 0.88101 1.00967 1.21722 1.00180 0.92378 0.91101 1.21646 1.03794 0.94330 0.97077 1.21096 0.78858 0.82033 0.87622 1.90678 1.43714 1.70061 1.42448 1.48194 1.54693 1.06874 1.24114 1.21967 0.93448 0.97152 0.89351 1.21767 0.97859 0.97973 0.97769 1.21406 0.95054 0.95353 0.96263 1.23736 0.93524 0.84399 1.01570 1.89296 1.52980 1.46549 1.42129 1.23166 0.90788 0.96223 0.88188 0.92601 1.20918 0.94361 0.83830 0.97847 1.42514 1.06995 1.04448 1.84678 1.19653 0.90531 0.89452 1.38494 0.90443 1.25647 0.98120 0.99724 1.03537 1.69850 1.15833 1.18438 1.57976 0.85146 0.77937 0.77918 0.78348 1.20337 1.22134 1.20121 1.22948 0.99359 0.91718 1.02510 1.21816 0.97498 0.98476 0.97034 1.21618 0.96138 0.94605 0.89021 0.95877 0.90286 0.90135 0.91235 0.90002 0.95810 0.91329 0.95530 0.86846 0.86425 0.86798 0.90300 0.90027 0.90205 0.88160 0.92334 0.94225 0.95917 0.79521 0.94046 0.88951 0.89664 0.89872 0.90848 0.90738 0.90117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.32 127.69 1.19 1.34 16 2 N -0.56 -7.09 5.02 -948.84 -4.76 -11.86 16 3 C 0.02 0.25 9.57 127.69 1.22 1.47 16 4 C 0.07 1.13 4.25 86.30 0.37 1.49 16 5 C -0.13 -1.56 3.97 29.85 0.12 -1.44 16 6 C 0.51 9.48 7.70 87.66 0.67 10.15 16 7 O -0.59 -15.70 15.39 -3.04 -0.05 -15.74 16 8 N -0.61 -9.50 2.97 -819.43 -2.43 -11.93 16 9 C 0.10 1.19 6.01 86.25 0.52 1.71 16 10 C -0.12 -1.66 4.67 30.35 0.14 -1.52 16 11 C -0.08 -1.46 0.68 -51.91 -0.04 -1.50 16 12 C 0.04 1.03 5.63 72.31 0.41 1.44 16 13 O -0.39 -13.71 11.33 -148.98 -1.69 -15.39 16 14 C 0.07 2.43 3.33 31.14 0.10 2.53 16 15 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 16 C 0.16 6.41 5.88 86.38 0.51 6.92 16 17 N -0.74 -39.78 5.58 -343.46 -1.92 -41.70 16 18 C -0.25 -14.40 9.99 84.04 0.84 -13.56 16 19 H 0.08 4.22 7.83 -2.92 -0.02 4.20 16 20 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 21 N -0.97 -61.30 13.06 21.66 0.28 -61.02 16 22 Si 0.98 46.86 29.55 68.60 2.03 48.89 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 26 C -0.13 -2.81 5.91 31.47 0.19 -2.62 16 27 C -0.11 -1.75 4.55 30.49 0.14 -1.61 16 28 C 0.11 1.83 6.14 86.39 0.53 2.36 16 29 H 0.02 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.08 0.61 8.12 -2.38 -0.02 0.59 16 31 H 0.08 0.60 6.47 -2.39 -0.02 0.58 16 32 H 0.07 0.74 8.12 -2.39 -0.02 0.72 16 33 H 0.08 0.68 8.12 -2.39 -0.02 0.66 16 34 H 0.02 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.07 1.21 8.02 -2.39 -0.02 1.19 16 36 H 0.03 0.48 8.08 -2.39 -0.02 0.46 16 37 H 0.11 0.95 6.10 -2.39 -0.01 0.93 16 38 H 0.12 1.12 7.94 -2.39 -0.02 1.11 16 39 H 0.11 0.78 5.92 -2.39 -0.01 0.76 16 40 H 0.08 0.93 6.44 -2.39 -0.02 0.91 16 41 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 43 H 0.10 2.04 6.00 -2.39 -0.01 2.03 16 44 H 0.06 1.33 7.70 -2.38 -0.02 1.31 16 45 H 0.04 1.54 8.14 -2.39 -0.02 1.53 16 46 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.37 21.63 7.67 -92.70 -0.71 20.92 16 48 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 49 H 0.09 1.75 7.71 -2.39 -0.02 1.73 16 50 H 0.08 1.80 7.45 -2.39 -0.02 1.78 16 51 H 0.08 1.29 8.12 -2.39 -0.02 1.27 16 52 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 53 H 0.07 1.19 7.45 -2.39 -0.02 1.17 16 54 H 0.08 1.61 7.00 -2.39 -0.02 1.59 16 Total: -1.00 -75.42 411.02 -1.00 -76.42 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: 0.16 Total: 29.32 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 7.38 Total: 3.02 kcal Atomic # 7 Polarization: -117.68 SS G_CDS: -8.83 Total: -126.51 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -1.73 Total: -31.14 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -75.42 -1.00 -76.42 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717635642.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.205 kcal (2) G-P(sol) polarization free energy of solvation -75.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds