Wall clock time and date at job start Sat Apr 11 2020 05:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00004 * 2 1 4 4 H 1.48507 * 109.47303 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47556 * 119.99805 * 3 2 1 6 6 H 1.48504 * 109.47033 * 240.00394 * 3 2 1 7 7 C 1.37869 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00535 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00049 * 0.02562 * 7 2 1 10 10 O 1.42897 * 112.94117 * 50.32676 * 9 7 2 11 11 C 1.53939 * 113.73927 * 278.74143 * 9 7 2 12 12 N 1.47817 * 86.03759 * 222.08032 * 11 9 7 13 13 C 1.34774 * 134.46093 * 204.64651 * 12 11 9 14 14 O 1.21605 * 119.99974 * 174.21079 * 13 12 11 15 15 C 1.47436 * 119.99890 * 354.21033 * 13 12 11 16 16 C 1.39737 * 120.20133 * 333.83933 * 15 13 12 17 17 C 1.37829 * 119.91405 * 179.76619 * 16 15 13 18 18 Br 1.89102 * 119.83440 * 180.20898 * 17 16 15 19 19 C 1.38684 * 120.33241 * 0.48553 * 17 16 15 20 20 C 1.37959 * 120.41002 * 359.76816 * 19 17 16 21 21 C 1.38940 * 120.07677 * 359.97438 * 20 19 17 22 22 N 1.38920 * 120.16590 * 180.02562 * 21 20 19 23 23 C 1.47591 * 91.04600 * 24.54762 * 12 11 9 24 24 H 0.97003 * 120.00143 * 359.97438 * 1 2 3 25 25 H 0.96700 * 114.00652 * 309.67329 * 10 9 7 26 26 H 1.09003 * 113.77293 * 336.34139 * 11 9 7 27 27 H 1.09000 * 113.77439 * 107.74295 * 11 9 7 28 28 H 1.07998 * 120.04662 * 359.97438 * 16 15 13 29 29 H 1.08000 * 119.79344 * 179.74379 * 19 17 16 30 30 H 1.07995 * 119.95827 * 179.97438 * 20 19 17 31 31 H 0.97005 * 119.99688 * 184.68835 * 22 21 20 32 32 H 0.96997 * 119.99868 * 4.68283 * 22 21 20 33 33 H 1.09003 * 113.76670 * 221.15281 * 23 12 11 34 34 H 1.08998 * 113.76469 * 89.75780 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6964 -1.2126 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.2454 -2.5617 -1.0127 11 6 0.7552 -2.9285 1.3932 12 7 1.1913 -4.2896 1.0160 13 6 0.8418 -5.5332 1.4001 14 8 1.3097 -6.4998 0.8296 15 6 -0.1079 -5.7217 2.5120 16 6 -0.2337 -4.7440 3.5024 17 6 -1.1268 -4.9241 4.5366 18 35 -1.2995 -3.5968 5.8724 19 6 -1.8954 -6.0765 4.6056 20 6 -1.7783 -7.0529 3.6380 21 6 -0.8872 -6.8865 2.5851 22 7 -0.7682 -7.8683 1.6095 23 6 2.1609 -3.7400 0.0484 24 1 -0.4850 0.8401 0.0004 25 1 -0.3467 -1.7973 -1.0271 26 1 1.3259 -2.4964 2.2153 27 1 -0.3224 -2.8319 1.5250 28 1 0.3657 -3.8468 3.4558 29 1 -2.5895 -6.2105 5.4220 30 1 -2.3801 -7.9475 3.6991 31 1 -0.0980 -7.7817 0.9135 32 1 -1.3553 -8.6403 1.6242 33 1 2.2033 -4.2902 -0.8917 34 1 3.1453 -3.5468 0.4745 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154589513.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:07 Heat of formation + Delta-G solvation = -17.797627 kcal Electronic energy + Delta-G solvation = -21490.173243 eV Core-core repulsion = 18049.388322 eV Total energy + Delta-G solvation = -3440.784921 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.22414 -38.75685 -37.18161 -34.77008 -33.90446 -32.23735 -31.46951 -31.03105 -28.54934 -27.61712 -25.47563 -25.38513 -23.49789 -21.85553 -20.17195 -18.70904 -17.51272 -17.07900 -16.90720 -16.47659 -15.74231 -15.14272 -14.75294 -14.42158 -14.24710 -14.01958 -13.83191 -13.46489 -13.05659 -12.59487 -12.44902 -12.09213 -11.87610 -11.60329 -11.54743 -11.35436 -11.10767 -11.03894 -10.55349 -10.31746 -10.17297 -9.87746 -9.69348 -9.27884 -9.03756 -8.78009 -8.46437 -7.94000 -7.50022 -6.39872 -4.50682 1.02127 1.39332 1.82620 3.08655 3.16561 3.22732 3.24490 3.45838 3.87675 3.97528 4.18426 4.70150 4.77698 4.85446 5.13462 5.31486 5.49672 5.53665 5.80994 5.88418 6.00405 6.03875 6.16996 6.25310 6.33413 6.44348 6.56761 6.62252 6.66860 7.05894 7.43010 7.61845 7.79601 7.82514 8.40475 8.52233 8.63764 9.20535 9.40195 10.66912 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.011323 B = 0.004731 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.235060 B = 5916.858885 C = 7920.328825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.284 1.284 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.071 0.929 9 C 0.240 3.760 10 O -0.572 6.572 11 C 0.076 3.924 12 N -0.623 5.623 13 C 0.583 3.417 14 O -0.573 6.573 15 C -0.205 4.205 16 C -0.002 4.002 17 C -0.163 4.163 18 Br -0.060 7.060 19 C -0.021 4.021 20 C -0.211 4.211 21 C 0.287 3.713 22 N -0.853 5.853 23 C 0.112 3.888 24 H 0.274 0.726 25 H 0.392 0.608 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.141 0.859 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.418 0.582 32 H 0.395 0.605 33 H 0.072 0.928 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.136 -9.056 10.775 14.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.129 4.129 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.578 4.578 8 H 0.089 0.911 9 C 0.199 3.801 10 O -0.384 6.384 11 C -0.047 4.047 12 N -0.354 5.354 13 C 0.374 3.626 14 O -0.457 6.457 15 C -0.214 4.214 16 C -0.022 4.022 17 C -0.244 4.244 18 Br 0.024 6.976 19 C -0.041 4.041 20 C -0.235 4.235 21 C 0.174 3.826 22 N -0.395 5.395 23 C -0.010 4.010 24 H 0.084 0.916 25 H 0.247 0.753 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.158 0.842 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.257 0.743 32 H 0.222 0.778 33 H 0.091 0.909 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.841 -9.650 10.836 15.296 hybrid contribution 0.080 0.885 -0.197 0.910 sum -4.761 -8.765 10.640 14.584 Atomic orbital electron populations 1.69388 1.06148 1.28347 1.49698 1.25055 0.95015 0.99833 0.93005 0.86406 0.79533 0.81703 0.78992 1.20987 1.19849 1.19873 1.21439 0.93879 0.89877 1.52567 0.91068 1.19822 0.85616 0.91206 0.83481 1.86057 1.47113 1.49905 1.55323 1.24473 1.00342 0.77090 1.02780 1.50128 1.39647 1.04640 1.40942 1.17597 0.80836 0.82006 0.82146 1.90500 1.58111 1.39140 1.57920 1.19354 1.05473 0.96489 1.00077 1.21289 0.93634 0.97051 0.90266 1.21254 1.06691 0.97299 0.99205 1.96651 1.97908 1.52225 1.50773 1.20895 0.95333 0.90776 0.97137 1.20513 1.04498 1.01960 0.96497 1.17783 0.90318 0.86995 0.87521 1.43143 1.42126 1.23084 1.31142 1.23504 0.93248 0.92794 0.91413 0.91569 0.75308 0.89798 0.90904 0.84161 0.85022 0.85001 0.74345 0.77781 0.90944 0.89366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.38 11.20 55.43 0.62 -21.76 16 2 C 0.07 1.81 5.39 -17.82 -0.10 1.72 16 3 Si 0.91 19.22 29.54 -169.99 -5.02 14.20 16 4 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 7 C -0.54 -13.24 8.61 -34.44 -0.30 -13.54 16 8 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 9 C 0.24 5.65 1.40 -90.85 -0.13 5.52 16 10 O -0.57 -14.52 13.48 -35.23 -0.48 -14.99 16 11 C 0.08 1.60 5.74 -2.84 -0.02 1.58 16 12 N -0.62 -12.99 3.58 -179.37 -0.64 -13.63 16 13 C 0.58 11.81 7.70 -12.52 -0.10 11.72 16 14 O -0.57 -12.34 14.88 5.27 0.08 -12.26 16 15 C -0.20 -3.56 5.82 -104.80 -0.61 -4.17 16 16 C 0.00 -0.02 8.57 -39.17 -0.34 -0.36 16 17 C -0.16 -2.31 6.22 -39.57 -0.25 -2.56 16 18 Br -0.06 -0.79 33.69 -68.01 -2.29 -3.08 16 19 C -0.02 -0.25 9.76 -39.52 -0.39 -0.63 16 20 C -0.21 -2.53 9.88 -39.42 -0.39 -2.92 16 21 C 0.29 4.23 6.74 -83.60 -0.56 3.67 16 22 N -0.85 -11.26 8.92 32.55 0.29 -10.97 16 23 C 0.11 2.39 8.23 -2.96 -0.02 2.36 16 24 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 25 H 0.39 10.05 6.60 45.56 0.30 10.35 16 26 H 0.08 1.69 7.69 -51.93 -0.40 1.29 16 27 H 0.07 1.58 7.93 -51.93 -0.41 1.17 16 28 H 0.14 2.34 5.67 -52.49 -0.30 2.04 16 29 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 30 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 31 H 0.42 6.47 5.76 -40.82 -0.24 6.23 16 32 H 0.39 3.72 8.84 -40.82 -0.36 3.36 16 33 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.09 1.71 8.09 -51.93 -0.42 1.29 16 LS Contribution 311.63 15.07 4.70 4.70 Total: -1.00 -27.29 311.63 -8.57 -35.86 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -2.64 Total: 19.56 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -3.19 Total: 2.39 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 0.27 Total: -46.37 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.40 Total: -27.25 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.20 kcal Atomic # 35 Polarization: -0.79 SS G_CDS: -2.29 Total: -3.08 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.29 -8.57 -35.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154589513.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.061 kcal (2) G-P(sol) polarization free energy of solvation -27.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds