Wall clock time and date at job start Sat Apr 11 2020 05:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47163 * 2 1 4 4 C 1.50699 * 109.47152 * 120.00329 * 2 1 3 5 5 H 1.08001 * 119.99879 * 119.99761 * 4 2 1 6 6 C 1.37875 * 120.00085 * 299.99874 * 4 2 1 7 7 N 1.31521 * 119.99832 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00281 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47144 * 180.02562 * 8 6 4 10 10 H 1.48498 * 109.46776 * 300.00108 * 8 6 4 11 11 H 1.48502 * 109.46776 * 59.99984 * 8 6 4 12 12 N 1.46508 * 109.47051 * 239.99992 * 2 1 3 13 13 C 1.34776 * 119.99862 * 84.99986 * 12 2 1 14 14 O 1.21360 * 119.99969 * 0.02562 * 13 12 2 15 15 C 1.49348 * 120.00242 * 179.97438 * 13 12 2 16 16 O 1.21381 * 119.99404 * 0.02562 * 15 13 12 17 17 N 1.34776 * 120.00242 * 180.02562 * 15 13 12 18 18 C 1.39745 * 120.00131 * 175.37857 * 17 15 13 19 19 C 1.38927 * 120.07170 * 214.82732 * 18 17 15 20 20 C 1.38083 * 119.93599 * 179.76845 * 19 18 17 21 21 C 1.38377 * 120.06996 * 0.48100 * 20 19 18 22 22 Br 1.89097 * 119.93759 * 179.74636 * 21 20 19 23 23 C 1.38374 * 120.12749 * 359.76975 * 21 20 19 24 24 C 1.38095 * 120.06730 * 0.02562 * 23 21 20 25 25 H 1.08999 * 109.47545 * 59.99834 * 1 2 3 26 26 H 1.09001 * 109.47466 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47500 * 299.99688 * 1 2 3 28 28 H 0.97001 * 119.99795 * 179.97438 * 7 6 4 29 29 H 0.96996 * 120.00123 * 265.00396 * 12 2 1 30 30 H 0.96999 * 119.99983 * 355.38579 * 17 15 13 31 31 H 1.08005 * 120.02711 * 359.97438 * 19 18 17 32 32 H 1.08006 * 119.96723 * 180.20760 * 20 19 18 33 33 H 1.08001 * 119.96806 * 179.97438 * 23 21 20 34 34 H 1.08006 * 120.03218 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1206 4.0079 9 1 1.8259 -0.4208 5.2204 10 1 1.8257 -2.5204 4.0076 11 1 3.8063 -1.1211 4.0081 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3572 14 8 1.8588 1.1594 -2.4115 15 6 2.6453 -0.7221 -3.5765 16 8 2.9340 -1.8998 -3.5220 17 7 2.7745 -0.0496 -4.7373 18 6 3.3311 -0.6814 -5.8527 19 6 4.1151 0.0415 -6.7431 20 6 4.6676 -0.5866 -7.8417 21 6 4.4330 -1.9325 -8.0616 22 35 5.1856 -2.7873 -9.5712 23 6 3.6482 -2.6540 -7.1794 24 6 3.0964 -2.0323 -6.0766 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.7089 1.1613 3.4844 29 1 2.2489 -1.6318 -1.1527 30 1 2.4813 0.8730 -4.7986 31 1 4.2950 1.0930 -6.5744 32 1 5.2800 -0.0259 -8.5324 33 1 3.4664 -3.7042 -7.3537 34 1 2.4837 -2.5958 -5.3886 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123170684.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:19 Heat of formation + Delta-G solvation = -40.406697 kcal Electronic energy + Delta-G solvation = -20352.716552 eV Core-core repulsion = 16910.951228 eV Total energy + Delta-G solvation = -3441.765324 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.96845 -39.28991 -37.99837 -35.54796 -34.76900 -32.49348 -31.80902 -31.37075 -29.34221 -28.73878 -25.40698 -24.86046 -23.36479 -22.21524 -20.83027 -19.73973 -18.82174 -17.72853 -16.63593 -16.26218 -15.85280 -15.72334 -15.33290 -14.86915 -14.48480 -14.23274 -13.90992 -13.67772 -13.38681 -13.22324 -12.54255 -12.22020 -11.87772 -11.84785 -11.42318 -11.25511 -11.15505 -11.04366 -10.85889 -10.54628 -10.42436 -10.31921 -10.20885 -9.37629 -9.22000 -9.15258 -8.67559 -8.39565 -8.20777 -6.21881 -4.31907 0.66812 1.02402 1.37100 1.71267 2.51209 3.22496 3.27483 3.29036 3.30181 3.59905 3.94369 4.28686 4.48808 4.59775 4.95472 4.97095 5.06209 5.11198 5.21486 5.59513 5.67999 5.94010 5.95959 6.08558 6.56748 6.65689 6.77449 6.92519 6.96393 7.13113 7.31344 7.56017 7.68529 7.78721 7.99467 8.34601 8.52869 8.78052 9.35332 10.84085 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.034561 B = 0.002028 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.971805 B =13801.421876 C =14251.163271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.262 3.738 3 H 0.055 0.945 4 C -0.539 4.539 5 H 0.064 0.936 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.285 1.285 10 H -0.275 1.275 11 H -0.275 1.275 12 N -0.666 5.666 13 C 0.495 3.505 14 O -0.534 6.534 15 C 0.509 3.491 16 O -0.502 6.502 17 N -0.653 5.653 18 C 0.166 3.834 19 C -0.138 4.138 20 C -0.071 4.071 21 C -0.109 4.109 22 Br -0.057 7.057 23 C -0.070 4.070 24 C -0.117 4.117 25 H 0.016 0.984 26 H 0.030 0.970 27 H 0.095 0.905 28 H 0.267 0.733 29 H 0.403 0.597 30 H 0.426 0.574 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.369 -4.662 -23.869 25.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.073 0.927 4 C -0.577 4.577 5 H 0.082 0.918 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.732 3.268 9 H -0.211 1.211 10 H -0.200 1.200 11 H -0.201 1.201 12 N -0.315 5.315 13 C 0.273 3.727 14 O -0.412 6.412 15 C 0.293 3.707 16 O -0.375 6.375 17 N -0.299 5.299 18 C 0.071 3.929 19 C -0.159 4.159 20 C -0.091 4.091 21 C -0.189 4.189 22 Br 0.028 6.972 23 C -0.091 4.091 24 C -0.138 4.138 25 H 0.036 0.964 26 H 0.050 0.950 27 H 0.113 0.887 28 H 0.077 0.923 29 H 0.237 0.763 30 H 0.264 0.736 31 H 0.156 0.844 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.529 -4.841 -24.133 25.465 hybrid contribution 0.143 -0.227 1.152 1.183 sum 6.672 -5.068 -22.981 24.461 Atomic orbital electron populations 1.22102 0.97745 0.99619 1.01270 1.18996 0.91489 0.94141 0.79252 0.92747 1.21145 1.32974 1.13555 0.90006 0.91770 1.24877 0.94648 0.94918 0.99108 1.69881 1.35574 1.22299 1.24255 0.86440 0.79237 0.79621 0.81455 1.21053 1.20021 1.20064 1.46527 1.61086 1.14563 1.09296 1.19596 0.81307 0.87307 0.84478 1.90740 1.50758 1.15135 1.84614 1.21057 0.77863 0.87125 0.84705 1.90731 1.46634 1.15236 1.84896 1.43290 1.60313 1.17719 1.08624 1.17924 0.94540 0.92961 0.87516 1.20969 0.98317 1.00964 0.95696 1.20875 0.98593 0.92532 0.97147 1.21759 1.04904 0.95758 0.96508 1.96701 1.83174 1.79726 1.37557 1.21029 0.95242 1.00118 0.92688 1.21386 1.01000 0.93915 0.97512 0.96442 0.95047 0.88661 0.92339 0.76274 0.73598 0.84398 0.84559 0.84583 0.83223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.26 37.15 0.34 -3.18 16 2 C 0.26 6.40 2.56 -69.08 -0.18 6.23 16 3 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 4 C -0.54 -13.92 8.73 -34.44 -0.30 -14.22 16 5 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.02 11.32 55.43 0.63 -23.40 16 8 Si 0.91 20.25 29.54 -169.99 -5.02 15.22 16 9 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 12 N -0.67 -13.73 5.06 -55.40 -0.28 -14.01 16 13 C 0.49 9.42 7.85 -11.63 -0.09 9.33 16 14 O -0.53 -11.23 16.14 5.49 0.09 -11.15 16 15 C 0.51 8.09 7.73 -11.63 -0.09 8.00 16 16 O -0.50 -8.51 13.91 5.47 0.08 -8.44 16 17 N -0.65 -8.26 5.32 -10.29 -0.05 -8.32 16 18 C 0.17 1.94 6.30 -83.74 -0.53 1.41 16 19 C -0.14 -1.31 9.97 -39.38 -0.39 -1.70 16 20 C -0.07 -0.64 9.78 -39.59 -0.39 -1.02 16 21 C -0.11 -1.07 6.23 -39.48 -0.25 -1.32 16 22 Br -0.06 -0.50 33.70 -68.01 -2.29 -2.79 16 23 C -0.07 -0.73 9.78 -39.58 -0.39 -1.11 16 24 C -0.12 -1.39 8.70 -39.38 -0.34 -1.74 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 28 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.40 7.71 8.01 -40.82 -0.33 7.38 16 30 H 0.43 4.70 8.30 -40.82 -0.34 4.36 16 31 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 32 H 0.14 0.94 8.06 -52.48 -0.42 0.51 16 33 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 34 H 0.15 1.94 6.22 -52.48 -0.33 1.61 16 LS Contribution 321.16 15.07 4.84 4.84 Total: -1.00 -28.49 321.16 -8.06 -36.55 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -3.36 Total: 9.11 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -2.69 Total: 2.37 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 0.29 Total: -45.72 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: 0.16 Total: -19.58 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 35 Polarization: -0.50 SS G_CDS: -2.29 Total: -2.79 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.49 -8.06 -36.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123170684.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.856 kcal (2) G-P(sol) polarization free energy of solvation -28.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds