Wall clock time and date at job start Sat Apr 11 2020 05:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47163 * 2 1 4 4 C 1.50699 * 109.47152 * 120.00329 * 2 1 3 5 5 H 1.08001 * 119.99879 * 119.99761 * 4 2 1 6 6 C 1.37875 * 120.00085 * 299.99874 * 4 2 1 7 7 N 1.31521 * 119.99832 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00281 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47144 * 180.02562 * 8 6 4 10 10 H 1.48498 * 109.46776 * 300.00108 * 8 6 4 11 11 H 1.48502 * 109.46776 * 59.99984 * 8 6 4 12 12 N 1.46508 * 109.47051 * 239.99992 * 2 1 3 13 13 C 1.34776 * 119.99862 * 84.99986 * 12 2 1 14 14 O 1.21360 * 119.99969 * 0.02562 * 13 12 2 15 15 C 1.49348 * 120.00242 * 179.97438 * 13 12 2 16 16 O 1.21381 * 119.99404 * 0.02562 * 15 13 12 17 17 N 1.34776 * 120.00242 * 180.02562 * 15 13 12 18 18 C 1.39745 * 120.00131 * 175.37857 * 17 15 13 19 19 C 1.38927 * 120.07170 * 214.82732 * 18 17 15 20 20 C 1.38083 * 119.93599 * 179.76845 * 19 18 17 21 21 C 1.38377 * 120.06996 * 0.48100 * 20 19 18 22 22 Br 1.89097 * 119.93759 * 179.74636 * 21 20 19 23 23 C 1.38374 * 120.12749 * 359.76975 * 21 20 19 24 24 C 1.38095 * 120.06730 * 0.02562 * 23 21 20 25 25 H 1.08999 * 109.47545 * 59.99834 * 1 2 3 26 26 H 1.09001 * 109.47466 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47500 * 299.99688 * 1 2 3 28 28 H 0.97001 * 119.99795 * 179.97438 * 7 6 4 29 29 H 0.96996 * 120.00123 * 265.00396 * 12 2 1 30 30 H 0.96999 * 119.99983 * 355.38579 * 17 15 13 31 31 H 1.08005 * 120.02711 * 359.97438 * 19 18 17 32 32 H 1.08006 * 119.96723 * 180.20760 * 20 19 18 33 33 H 1.08001 * 119.96806 * 179.97438 * 23 21 20 34 34 H 1.08006 * 120.03218 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1206 4.0079 9 1 1.8259 -0.4208 5.2204 10 1 1.8257 -2.5204 4.0076 11 1 3.8063 -1.1211 4.0081 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3572 14 8 1.8588 1.1594 -2.4115 15 6 2.6453 -0.7221 -3.5765 16 8 2.9340 -1.8998 -3.5220 17 7 2.7745 -0.0496 -4.7373 18 6 3.3311 -0.6814 -5.8527 19 6 4.1151 0.0415 -6.7431 20 6 4.6676 -0.5866 -7.8417 21 6 4.4330 -1.9325 -8.0616 22 35 5.1856 -2.7873 -9.5712 23 6 3.6482 -2.6540 -7.1794 24 6 3.0964 -2.0323 -6.0766 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.7089 1.1613 3.4844 29 1 2.2489 -1.6318 -1.1527 30 1 2.4813 0.8730 -4.7986 31 1 4.2950 1.0930 -6.5744 32 1 5.2800 -0.0259 -8.5324 33 1 3.4664 -3.7042 -7.3537 34 1 2.4837 -2.5958 -5.3886 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123170684.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:18 Heat of formation + Delta-G solvation = -58.562892 kcal Electronic energy + Delta-G solvation = -20353.503863 eV Core-core repulsion = 16910.951228 eV Total energy + Delta-G solvation = -3442.552636 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.16769 -40.50161 -39.27789 -37.09088 -36.11244 -34.35635 -32.63950 -32.15567 -31.12354 -29.69911 -27.38441 -26.22472 -24.22555 -23.39026 -22.26053 -21.28147 -20.20469 -18.82311 -18.16974 -17.61816 -17.13682 -17.05641 -16.79377 -16.19687 -15.78517 -15.36343 -15.12337 -14.87135 -14.53189 -14.43764 -14.26956 -13.75538 -13.19933 -13.05345 -12.91232 -12.78028 -12.68364 -12.53043 -12.29840 -12.17502 -12.11532 -11.26732 -11.17996 -11.10634 -10.71898 -10.61154 -10.09589 -10.00573 -9.26932 -8.20851 -6.38198 -0.26661 0.24796 0.43640 0.61562 1.24998 1.46589 1.47185 1.55501 2.07027 2.38227 2.56350 2.68231 3.10065 3.42795 3.74670 3.86127 4.18777 4.25398 4.36860 4.69232 4.77654 4.87792 4.92862 5.00715 5.10241 5.15600 5.18319 5.29087 5.42035 5.58328 5.70018 5.76040 5.93877 6.02929 6.47383 6.63297 6.73198 7.04314 7.34021 8.84984 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.034561 B = 0.002028 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.971805 B =13801.421876 C =14251.163271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.269 3.731 3 H 0.016 0.984 4 C -0.554 4.554 5 H 0.070 0.930 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.971 3.029 9 H -0.283 1.283 10 H -0.266 1.266 11 H -0.272 1.272 12 N -0.670 5.670 13 C 0.496 3.504 14 O -0.555 6.555 15 C 0.520 3.480 16 O -0.514 6.514 17 N -0.635 5.635 18 C 0.142 3.858 19 C -0.128 4.128 20 C -0.068 4.068 21 C -0.112 4.112 22 Br -0.045 7.045 23 C -0.075 4.075 24 C -0.130 4.130 25 H 0.021 0.979 26 H 0.040 0.960 27 H 0.073 0.927 28 H 0.268 0.732 29 H 0.410 0.590 30 H 0.433 0.567 31 H 0.163 0.837 32 H 0.162 0.838 33 H 0.148 0.852 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.521 -5.282 -25.232 26.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.166 3.834 3 H 0.034 0.966 4 C -0.592 4.592 5 H 0.088 0.912 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.795 3.205 9 H -0.209 1.209 10 H -0.191 1.191 11 H -0.197 1.197 12 N -0.319 5.319 13 C 0.276 3.724 14 O -0.435 6.435 15 C 0.302 3.698 16 O -0.389 6.389 17 N -0.282 5.282 18 C 0.048 3.952 19 C -0.149 4.149 20 C -0.088 4.088 21 C -0.192 4.192 22 Br 0.040 6.960 23 C -0.095 4.095 24 C -0.151 4.151 25 H 0.040 0.960 26 H 0.059 0.941 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.246 0.754 30 H 0.273 0.727 31 H 0.180 0.820 32 H 0.180 0.820 33 H 0.165 0.835 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.692 -5.465 -25.555 27.241 hybrid contribution -0.175 -0.011 1.407 1.418 sum 7.517 -5.475 -24.148 25.876 Atomic orbital electron populations 1.21931 0.97382 0.99850 1.00393 1.18618 0.91732 0.92391 0.80629 0.96625 1.21461 1.33146 1.13825 0.90758 0.91163 1.25715 0.94736 0.95543 1.02042 1.70009 1.36507 1.23543 1.24911 0.85415 0.78649 0.78701 0.77708 1.20864 1.19129 1.19692 1.46272 1.61747 1.14849 1.09048 1.20080 0.80266 0.87027 0.85057 1.90721 1.51379 1.16227 1.85184 1.20234 0.78315 0.86728 0.84513 1.90739 1.47662 1.15480 1.85031 1.43083 1.59425 1.17817 1.07895 1.18107 0.96096 0.93238 0.87749 1.21223 0.96864 1.01985 0.94781 1.21205 0.98182 0.92319 0.97137 1.21966 1.04367 0.96296 0.96605 1.96722 1.82877 1.79661 1.36730 1.21144 0.95200 1.00798 0.92337 1.21341 1.01551 0.94185 0.98056 0.95953 0.94123 0.90809 0.92289 0.75367 0.72676 0.81968 0.82038 0.83465 0.84749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.60 9.26 71.98 0.67 -5.94 16 2 C 0.27 13.42 2.56 44.24 0.11 13.53 16 3 H 0.02 0.91 7.58 -2.39 -0.02 0.89 16 4 C -0.55 -28.81 8.73 25.60 0.22 -28.59 16 5 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 6 C 0.02 1.08 5.30 84.65 0.45 1.53 16 7 N -0.91 -50.37 11.32 21.45 0.24 -50.13 16 8 Si 0.97 41.29 29.54 68.60 2.03 43.32 16 9 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 10 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 11 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 12 N -0.67 -27.92 5.06 -447.54 -2.27 -30.19 16 13 C 0.50 19.01 7.85 87.24 0.68 19.70 16 14 O -0.56 -23.66 16.14 -3.28 -0.05 -23.72 16 15 C 0.52 16.32 7.73 87.24 0.67 16.99 16 16 O -0.51 -17.31 13.91 -3.34 -0.05 -17.36 16 17 N -0.63 -15.45 5.32 -304.82 -1.62 -17.07 16 18 C 0.14 3.12 6.30 38.21 0.24 3.36 16 19 C -0.13 -2.07 9.97 22.40 0.22 -1.85 16 20 C -0.07 -1.02 9.78 22.27 0.22 -0.80 16 21 C -0.11 -1.94 6.23 22.34 0.14 -1.81 16 22 Br -0.05 -0.69 33.70 -20.37 -0.69 -1.38 16 23 C -0.07 -1.43 9.78 22.27 0.22 -1.21 16 24 C -0.13 -3.00 8.70 22.40 0.19 -2.80 16 25 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.07 3.89 6.07 -2.39 -0.01 3.88 16 28 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 29 H 0.41 15.77 8.01 -92.71 -0.74 15.02 16 30 H 0.43 9.06 8.30 -92.71 -0.77 8.29 16 31 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 32 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 33 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 34 H 0.13 3.49 6.22 -2.91 -0.02 3.47 16 Total: -1.00 -60.96 321.16 1.30 -59.66 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: -0.34 Total: 24.76 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 4.04 Total: 12.11 kcal Atomic # 7 Polarization: -93.75 SS G_CDS: -3.64 Total: -97.39 kcal Atomic # 8 Polarization: -40.97 SS G_CDS: -0.10 Total: -41.07 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 35 Polarization: -0.69 SS G_CDS: -0.69 Total: -1.38 kcal Total: -60.96 1.30 -59.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123170684.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.101 kcal (2) G-P(sol) polarization free energy of solvation -60.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds