Wall clock time and date at job start Sat Apr 11 2020 05:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47066 * 2 1 4 4 C 1.50701 * 109.46817 * 239.99857 * 2 1 3 5 5 H 1.08002 * 119.99980 * 239.99730 * 4 2 1 6 6 C 1.37875 * 120.00226 * 60.00162 * 4 2 1 7 7 N 1.31511 * 120.00142 * 179.71980 * 6 4 2 8 8 Si 1.86809 * 119.99866 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.47073 * 269.72375 * 8 6 4 10 10 H 1.48497 * 109.46900 * 29.72456 * 8 6 4 11 11 H 1.48495 * 109.47090 * 149.72320 * 8 6 4 12 12 N 1.46505 * 109.46774 * 120.00041 * 2 1 3 13 13 C 1.34777 * 119.99632 * 274.99872 * 12 2 1 14 14 O 1.21355 * 120.00421 * 359.97438 * 13 12 2 15 15 C 1.49353 * 119.99691 * 180.02562 * 13 12 2 16 16 O 1.21375 * 119.99630 * 359.97438 * 15 13 12 17 17 N 1.34774 * 120.00073 * 179.97438 * 15 13 12 18 18 C 1.39743 * 120.00112 * 175.37528 * 17 15 13 19 19 C 1.38932 * 120.07119 * 214.82560 * 18 17 15 20 20 C 1.38079 * 119.93800 * 179.76583 * 19 18 17 21 21 C 1.38382 * 120.06528 * 0.48465 * 20 19 18 22 22 Br 1.89103 * 119.93226 * 179.74307 * 21 20 19 23 23 C 1.38370 * 120.12989 * 359.76700 * 21 20 19 24 24 C 1.38086 * 120.07173 * 359.97438 * 23 21 20 25 25 H 1.09002 * 109.47027 * 59.99952 * 1 2 3 26 26 H 1.08998 * 109.47796 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47434 * 300.00363 * 1 2 3 28 28 H 0.97003 * 120.00025 * 180.27324 * 7 6 4 29 29 H 0.96994 * 119.99406 * 94.99866 * 12 2 1 30 30 H 0.96997 * 119.99701 * 355.37485 * 17 15 13 31 31 H 1.08008 * 120.02596 * 359.97438 * 19 18 17 32 32 H 1.07997 * 119.97061 * 180.20469 * 20 19 18 33 33 H 1.08002 * 119.96255 * 179.97438 * 23 21 20 34 34 H 1.08001 * 120.03905 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2395 -2.4827 7 7 2.1421 -0.8562 -3.5565 8 14 0.6247 1.2790 -2.6542 9 1 -0.8025 0.8721 -2.7065 10 1 0.8421 2.1733 -1.4888 11 1 0.9804 1.9987 -3.9034 12 7 2.0183 -0.6907 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8588 1.1594 2.4116 15 6 2.6453 -0.7222 3.5765 16 8 2.9339 -1.8998 3.5220 17 7 2.7745 -0.0497 4.7374 18 6 3.1477 -0.7286 5.9003 19 6 2.6297 -0.3405 7.1297 20 6 2.9967 -1.0163 8.2765 21 6 3.8873 -2.0730 8.2035 22 35 4.3930 -2.9912 9.7774 23 6 4.4090 -2.4585 6.9813 24 6 4.0417 -1.7899 5.8302 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.9110 -0.5225 -4.4375 29 1 2.2489 -1.6318 1.1526 30 1 2.6083 0.9055 4.7655 31 1 1.9380 0.4870 7.1877 32 1 2.5918 -0.7172 9.2319 33 1 5.1042 -3.2833 6.9275 34 1 4.4495 -2.0910 4.8766 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123170895.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:22 Heat of formation + Delta-G solvation = -31.377257 kcal Electronic energy + Delta-G solvation = -20418.122410 eV Core-core repulsion = 16976.748632 eV Total energy + Delta-G solvation = -3441.373778 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.05904 -39.40911 -38.13774 -35.70283 -34.91428 -32.50387 -31.85116 -31.41009 -30.17542 -28.88366 -25.44542 -24.95716 -23.41438 -22.30712 -20.89757 -19.90130 -18.93620 -17.76842 -16.84580 -16.38868 -16.03448 -15.82800 -15.44415 -15.09099 -14.59266 -14.29091 -13.97695 -13.71494 -13.41934 -13.35952 -13.00686 -12.32415 -12.26542 -12.00740 -11.88999 -11.49788 -11.45710 -11.26146 -10.90339 -10.57080 -10.30227 -10.25988 -9.79659 -9.42379 -9.37803 -9.25811 -8.88858 -8.47994 -8.41755 -6.28878 -4.33368 0.61948 0.98784 1.34279 1.60120 2.40157 3.16435 3.22886 3.29070 3.30841 3.47779 3.81749 4.22833 4.44441 4.56146 4.77690 4.92926 5.02072 5.04660 5.16200 5.55155 5.64541 5.90168 5.91693 6.03609 6.15617 6.20067 6.38409 6.52210 6.64833 6.79139 6.98154 7.04402 7.32169 7.57218 7.92832 8.30984 8.40894 8.70726 9.29153 10.83002 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.044277 B = 0.002058 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.226328 B =13601.932792 C =14037.080375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.235 3.765 3 H 0.055 0.945 4 C -0.540 4.540 5 H 0.084 0.916 6 C 0.080 3.920 7 N -0.887 5.887 8 Si 0.885 3.115 9 H -0.275 1.275 10 H -0.262 1.262 11 H -0.292 1.292 12 N -0.659 5.659 13 C 0.498 3.502 14 O -0.535 6.535 15 C 0.510 3.490 16 O -0.498 6.498 17 N -0.652 5.652 18 C 0.165 3.835 19 C -0.138 4.138 20 C -0.071 4.071 21 C -0.108 4.108 22 Br -0.056 7.056 23 C -0.070 4.070 24 C -0.116 4.116 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.037 0.963 28 H 0.269 0.731 29 H 0.409 0.591 30 H 0.425 0.575 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.124 -1.396 26.979 27.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.132 3.868 3 H 0.072 0.928 4 C -0.578 4.578 5 H 0.102 0.898 6 C -0.124 4.124 7 N -0.524 5.524 8 Si 0.714 3.286 9 H -0.202 1.202 10 H -0.186 1.186 11 H -0.220 1.220 12 N -0.308 5.308 13 C 0.276 3.724 14 O -0.413 6.413 15 C 0.293 3.707 16 O -0.370 6.370 17 N -0.299 5.299 18 C 0.069 3.931 19 C -0.159 4.159 20 C -0.092 4.092 21 C -0.188 4.188 22 Br 0.029 6.971 23 C -0.090 4.090 24 C -0.137 4.137 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.245 0.755 30 H 0.264 0.736 31 H 0.156 0.844 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.282 -1.753 27.218 27.471 hybrid contribution -0.733 0.936 -0.610 1.336 sum 2.549 -0.818 26.608 26.742 Atomic orbital electron populations 1.22474 0.98648 1.01358 0.99661 1.19333 0.90586 0.94794 0.82061 0.92764 1.20984 1.33777 1.14814 0.88253 0.89844 1.24819 0.95434 0.96716 0.95421 1.69857 1.44416 1.39986 0.98113 0.86884 0.80585 0.83456 0.77632 1.20158 1.18626 1.21967 1.46148 1.61260 1.14833 1.08580 1.19635 0.81045 0.87209 0.84485 1.90736 1.50776 1.15153 1.84683 1.20870 0.78042 0.87054 0.84723 1.90752 1.46340 1.15541 1.84406 1.43254 1.66848 1.13297 1.06487 1.17910 0.94611 0.94714 0.85832 1.20955 1.01604 1.02541 0.90811 1.20875 0.95819 0.93692 0.98794 1.21774 1.04276 1.00469 0.92326 1.96708 1.91567 1.76189 1.32599 1.21040 0.98623 0.99206 0.90169 1.21399 0.96476 0.96094 0.99754 0.92981 0.92403 0.94358 0.92094 0.75501 0.73615 0.84434 0.84546 0.84513 0.83149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 8.96 37.16 0.33 -3.13 16 2 C 0.23 5.35 2.15 -69.08 -0.15 5.20 16 3 H 0.05 1.33 6.63 -51.93 -0.34 0.98 16 4 C -0.54 -14.21 9.31 -34.44 -0.32 -14.53 16 5 H 0.08 2.33 7.98 -52.49 -0.42 1.91 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 7 N -0.89 -25.71 13.96 55.43 0.77 -24.93 16 8 Si 0.89 20.85 24.37 -169.99 -4.14 16.71 16 9 H -0.27 -6.27 6.88 56.52 0.39 -5.88 16 10 H -0.26 -6.02 6.52 56.52 0.37 -5.65 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 N -0.66 -12.88 5.06 -55.39 -0.28 -13.16 16 13 C 0.50 8.87 7.85 -11.63 -0.09 8.78 16 14 O -0.53 -10.42 16.14 5.49 0.09 -10.33 16 15 C 0.51 7.67 7.73 -11.63 -0.09 7.58 16 16 O -0.50 -8.14 13.91 5.48 0.08 -8.06 16 17 N -0.65 -7.76 5.32 -10.29 -0.05 -7.81 16 18 C 0.16 1.83 6.30 -83.74 -0.53 1.30 16 19 C -0.14 -1.23 9.97 -39.38 -0.39 -1.62 16 20 C -0.07 -0.61 9.78 -39.59 -0.39 -1.00 16 21 C -0.11 -1.02 6.23 -39.48 -0.25 -1.27 16 22 Br -0.06 -0.48 33.70 -68.01 -2.29 -2.77 16 23 C -0.07 -0.70 9.78 -39.59 -0.39 -1.09 16 24 C -0.12 -1.34 8.69 -39.38 -0.34 -1.68 16 25 H 0.05 1.14 3.28 -51.93 -0.17 0.97 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.41 7.57 8.01 -40.82 -0.33 7.25 16 30 H 0.43 4.33 8.30 -40.82 -0.34 3.99 16 31 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 32 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.15 1.91 6.22 -52.49 -0.33 1.58 16 LS Contribution 314.33 15.07 4.74 4.74 Total: -1.00 -29.59 314.33 -7.01 -36.60 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -3.22 Total: 8.36 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -2.70 Total: 0.65 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 0.44 Total: -45.90 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.16 Total: -18.39 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.14 Total: 16.71 kcal Atomic # 35 Polarization: -0.48 SS G_CDS: -2.29 Total: -2.77 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.59 -7.01 -36.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123170895.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.223 kcal (2) G-P(sol) polarization free energy of solvation -29.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds